Wall clock time and date at job start Tue Mar 31 2020 11:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.52998 * 109.47490 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47794 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47535 * 180.02562 * 9 8 7 11 11 O 1.21290 * 119.99684 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00024 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.46930 * 89.99848 * 13 12 10 15 15 H 1.08001 * 120.00638 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99764 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00419 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 120.00095 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46695 * 90.00001 * 18 16 14 20 20 H 1.48501 * 109.47084 * 209.99813 * 18 16 14 21 21 H 1.48490 * 109.46951 * 330.00283 * 18 16 14 22 22 C 1.46493 * 120.00279 * 359.97438 * 12 10 9 23 23 C 1.53001 * 109.47597 * 120.00133 * 22 12 10 24 24 C 1.52995 * 109.47412 * 240.00357 * 22 12 10 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 33 33 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 34 34 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 35 35 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 36 36 H 1.08999 * 109.47245 * 300.00709 * 8 7 6 37 37 H 1.09006 * 109.46881 * 59.99852 * 8 7 6 38 38 H 1.09000 * 109.46697 * 299.99938 * 9 8 7 39 39 H 1.08993 * 109.47016 * 59.99991 * 9 8 7 40 40 H 1.08999 * 109.46808 * 209.99549 * 13 12 10 41 41 H 1.08995 * 109.47343 * 329.99876 * 13 12 10 42 42 H 0.96997 * 120.00163 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.47349 * 0.02562 * 22 12 10 44 44 H 1.09004 * 109.46579 * 59.99763 * 23 22 12 45 45 H 1.08997 * 109.47707 * 180.02562 * 23 22 12 46 46 H 1.09004 * 109.47036 * 300.00378 * 23 22 12 47 47 H 1.09000 * 109.47246 * 59.99648 * 24 22 12 48 48 H 1.09003 * 109.47684 * 180.02562 * 24 22 12 49 49 H 1.08997 * 109.47403 * 299.99891 * 24 22 12 50 50 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8241 -0.0021 1.4247 9 6 8.3397 -0.0055 2.8652 10 6 9.8466 -0.0042 2.8595 11 8 10.4491 -0.0015 1.8068 12 7 10.5249 -0.0072 4.0241 13 6 11.9899 -0.0066 4.0185 14 6 12.4916 1.4144 4.0205 15 1 11.7895 2.2351 4.0259 16 6 13.8470 1.6669 4.0166 17 7 14.7022 0.6678 4.0106 18 14 14.4690 3.4284 4.0185 19 1 14.6384 3.8920 5.4191 20 1 15.7749 3.4930 3.3143 21 1 13.4882 4.3004 3.3237 22 6 9.7973 -0.0111 5.2955 23 6 10.1705 -1.2624 6.0930 24 6 10.1694 1.2360 6.0999 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 6.1400 -0.8891 -0.5270 33 1 6.1401 0.8909 -0.5236 34 1 5.9328 0.8863 1.9473 35 1 5.9327 -0.8937 1.9440 36 1 8.1859 -0.8908 0.9076 37 1 8.1851 0.8891 0.9112 38 1 7.9779 0.8831 3.3825 39 1 7.9787 -0.8968 3.3782 40 1 12.3568 -0.5227 4.9057 41 1 12.3501 -0.5177 3.1257 42 1 15.6557 0.8454 4.0082 43 1 8.7249 -0.0115 5.1005 44 1 11.2429 -1.2625 6.2880 45 1 9.6288 -1.2656 7.0388 46 1 9.9054 -2.1510 5.5199 47 1 9.9035 2.1274 5.5319 48 1 9.6283 1.2329 7.0462 49 1 11.2417 1.2360 6.2951 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814542.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:47 Heat of formation + Delta-G solvation = -65.047981 kcal Electronic energy + Delta-G solvation = -25861.281279 eV Core-core repulsion = 22337.373961 eV Total energy + Delta-G solvation = -3523.907318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85038 -40.31647 -37.64951 -36.62638 -34.95983 -34.03223 -32.38799 -31.75775 -31.26536 -29.40964 -27.99998 -27.49947 -25.39226 -24.11182 -23.55961 -22.66369 -22.02544 -21.37642 -19.41472 -18.60125 -18.03983 -17.00992 -16.95160 -16.81167 -16.32621 -16.09014 -15.89339 -15.37165 -14.92666 -14.82616 -14.56526 -14.41536 -14.22762 -14.10016 -13.96698 -13.72889 -13.50717 -13.35971 -13.23250 -12.94938 -12.89212 -12.80139 -12.74684 -12.48919 -12.41852 -12.22810 -12.14558 -12.09803 -12.01408 -11.75604 -11.62532 -11.59148 -11.47966 -11.39882 -10.60893 -10.49147 -9.77940 -9.38300 -9.30460 -8.19144 -6.31073 0.47026 0.54798 1.34486 1.37495 1.47379 1.90525 2.33120 2.48121 2.87777 3.10011 3.66838 3.89151 3.93354 3.98389 4.07223 4.10526 4.17865 4.21434 4.30954 4.36694 4.45027 4.54223 4.60057 4.64347 4.69508 4.74399 4.85335 4.86017 4.87375 4.89887 4.94666 4.95851 5.03674 5.04970 5.07987 5.13987 5.19658 5.23960 5.27001 5.36212 5.37404 5.44968 5.51012 5.57885 5.59071 5.65836 5.75679 5.81287 5.92671 6.12587 6.19337 6.75472 6.89235 7.32738 7.56381 8.87967 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.002152 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.024077 B =13007.869039 C =13435.617992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.105 4.105 3 C -0.129 4.129 4 C -0.127 4.127 5 C -0.094 4.094 6 C -0.080 4.080 7 C -0.097 4.097 8 C -0.098 4.098 9 C -0.126 4.126 10 C 0.489 3.511 11 O -0.603 6.603 12 N -0.600 5.600 13 C 0.263 3.737 14 C -0.524 4.524 15 H 0.053 0.947 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.962 3.038 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.125 3.875 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.125 4.125 26 C -0.128 4.128 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.024 0.976 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.118 0.882 44 H 0.035 0.965 45 H 0.097 0.903 46 H 0.056 0.944 47 H 0.043 0.957 48 H 0.090 0.910 49 H 0.041 0.959 50 H 0.130 0.870 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.198 -2.351 -1.375 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.105 4.105 3 C -0.147 4.147 4 C -0.145 4.145 5 C -0.094 4.094 6 C -0.118 4.118 7 C -0.135 4.135 8 C -0.136 4.136 9 C -0.166 4.166 10 C 0.279 3.721 11 O -0.485 6.485 12 N -0.331 5.331 13 C 0.141 3.859 14 C -0.562 4.562 15 H 0.071 0.929 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.199 1.199 22 C 0.022 3.978 23 C -0.214 4.214 24 C -0.210 4.210 25 C -0.143 4.143 26 C -0.146 4.146 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.042 0.958 41 H 0.007 0.993 42 H 0.073 0.927 43 H 0.136 0.864 44 H 0.055 0.945 45 H 0.115 0.885 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.108 0.892 49 H 0.060 0.940 50 H 0.148 0.852 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -28.695 -2.397 -1.882 28.857 hybrid contribution 1.438 0.773 -0.277 1.656 sum -27.258 -1.624 -2.159 27.392 Atomic orbital electron populations 1.20816 0.89692 1.03498 1.02870 1.20261 0.97384 0.93149 0.99693 1.21279 0.94146 0.98396 1.00885 1.21261 0.94673 0.97999 1.00577 1.20007 0.95751 0.93566 1.00031 1.20588 0.90572 1.03032 0.97581 1.21463 0.92785 1.03105 0.96135 1.21275 0.95748 1.01911 0.94667 1.21726 0.88675 1.05847 1.00319 1.21614 0.91918 0.75607 0.82983 1.90627 1.72358 1.52671 1.32832 1.48416 1.07521 1.70764 1.06394 1.18624 0.76239 0.95855 0.95168 1.21654 0.91775 0.92967 1.49837 0.92883 1.25835 0.97114 1.01533 0.95031 1.70058 1.02486 1.32810 1.51741 0.85496 0.77453 0.79675 0.78687 1.18889 1.20903 1.19878 1.21423 0.97192 0.96146 0.83036 1.22123 1.01568 0.96733 1.01020 1.22081 1.02023 0.96770 1.00132 1.21265 0.94633 0.97969 1.00448 1.21290 0.94170 0.98364 1.00801 0.90632 0.90792 0.90890 0.84785 0.85511 0.90976 0.91301 0.91115 0.90687 0.92830 0.93386 0.87275 0.86545 0.95812 0.99283 0.92668 0.86400 0.94534 0.88455 0.92465 0.93789 0.89170 0.93987 0.85232 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 71.24 0.71 -0.38 16 2 C -0.10 -1.59 5.88 -19.86 -0.12 -1.71 16 3 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 4 C -0.13 -2.27 9.70 22.27 0.22 -2.06 16 5 C -0.09 -1.74 5.13 -19.87 -0.10 -1.84 16 6 C -0.08 -1.52 5.34 29.84 0.16 -1.36 16 7 C -0.10 -1.85 5.20 30.59 0.16 -1.69 16 8 C -0.10 -2.58 4.50 30.59 0.14 -2.45 16 9 C -0.13 -3.42 4.01 29.85 0.12 -3.30 16 10 C 0.49 20.58 7.67 87.66 0.67 21.25 16 11 O -0.60 -32.07 15.56 -3.06 -0.05 -32.12 16 12 N -0.60 -25.60 2.39 -802.16 -1.91 -27.51 16 13 C 0.26 14.38 4.60 85.63 0.39 14.77 16 14 C -0.52 -30.34 7.83 25.60 0.20 -30.14 16 15 H 0.05 3.05 7.63 -2.91 -0.02 3.03 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 18 Si 0.96 45.83 29.54 68.60 2.03 47.85 16 19 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 21 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 22 C 0.12 3.82 3.17 44.99 0.14 3.96 16 23 C -0.16 -4.32 9.17 71.98 0.66 -3.66 16 24 C -0.15 -4.78 8.47 71.98 0.61 -4.17 16 25 C -0.13 -2.17 9.70 22.27 0.22 -1.95 16 26 C -0.13 -2.00 9.70 22.27 0.22 -1.79 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 29 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 30 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 33 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 34 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.05 1.56 8.10 -2.39 -0.02 1.55 16 37 H 0.05 1.47 8.10 -2.38 -0.02 1.45 16 38 H 0.11 2.49 7.79 -2.39 -0.02 2.47 16 39 H 0.12 2.43 7.79 -2.39 -0.02 2.42 16 40 H 0.02 1.33 6.43 -2.39 -0.02 1.32 16 41 H -0.01 -0.70 7.42 -2.39 -0.02 -0.72 16 42 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.12 2.65 5.77 -2.39 -0.01 2.63 16 44 H 0.04 1.23 6.66 -2.39 -0.02 1.22 16 45 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.04 1.64 6.92 -2.39 -0.02 1.62 16 50 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 51 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -76.37 409.83 6.29 -70.08 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.87 Total: 16.44 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 5.08 Total: -17.72 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -1.63 Total: -84.54 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.05 Total: -32.12 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -76.37 6.29 -70.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814542.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.030 kcal (2) G-P(sol) polarization free energy of solvation -76.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds