Wall clock time and date at job start Tue Mar 31 2020 12:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00042 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99865 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99741 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.47001 * 90.00387 * 13 12 10 15 15 H 1.08001 * 119.99331 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00246 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00062 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00393 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47275 * 89.99325 * 18 16 14 20 20 H 1.48501 * 109.47447 * 209.99854 * 18 16 14 21 21 H 1.48500 * 109.46856 * 330.00053 * 18 16 14 22 22 C 1.46493 * 119.99962 * 0.02562 * 12 10 9 23 23 C 1.53003 * 109.47105 * 120.00079 * 22 12 10 24 24 C 1.52998 * 109.47187 * 239.99753 * 22 12 10 25 25 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 26 26 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 27 27 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 28 28 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 29 29 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 31 31 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 32 32 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 34 34 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 35 35 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 37 37 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 38 38 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 39 39 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 40 40 H 1.09000 * 109.47287 * 209.99941 * 13 12 10 41 41 H 1.09002 * 109.47320 * 330.00543 * 13 12 10 42 42 H 0.96994 * 120.00434 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.47602 * 0.02562 * 22 12 10 44 44 H 1.09000 * 109.47374 * 59.99898 * 23 22 12 45 45 H 1.09001 * 109.47260 * 180.02562 * 23 22 12 46 46 H 1.09004 * 109.46771 * 299.99767 * 23 22 12 47 47 H 1.08997 * 109.46911 * 60.00369 * 24 22 12 48 48 H 1.09001 * 109.47006 * 180.02562 * 24 22 12 49 49 H 1.09000 * 109.47146 * 300.00013 * 24 22 12 50 50 H 1.08004 * 119.99934 * 179.72684 * 25 7 6 51 51 H 1.07999 * 120.00005 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 6 5.3030 -2.8442 6.3665 11 8 4.6472 -3.7368 6.8607 12 7 6.4806 -2.4886 6.9175 13 6 6.9675 -3.1791 8.1142 14 6 7.8043 -4.3639 7.7051 15 1 7.9576 -4.5809 6.6583 16 6 8.3732 -5.1712 8.6670 17 7 8.1861 -4.9072 9.9418 18 14 9.4097 -6.6401 8.1600 19 1 10.8285 -6.2223 8.0262 20 1 9.3017 -7.7023 9.1922 21 1 8.9231 -7.1636 6.8583 22 6 7.2729 -1.4109 6.3202 23 6 7.4622 -0.2896 7.3438 24 6 8.6401 -1.9550 5.9013 25 6 2.1532 -0.8940 3.6146 26 6 1.6980 -0.2384 2.4860 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 3.0878 -2.2035 0.1226 35 1 3.9082 -3.3645 2.1330 36 1 2.7358 -2.6006 5.5283 37 1 3.5755 -3.7868 4.5005 38 1 5.5203 -2.2585 4.3257 39 1 4.6807 -1.0723 5.3534 40 1 7.5731 -2.4943 8.7078 41 1 6.1191 -3.5209 8.7070 42 1 8.5866 -5.4749 10.6186 43 1 6.7535 -1.0198 5.4454 44 1 7.9815 -0.6802 8.2189 45 1 8.0514 0.5125 6.8993 46 1 6.4882 0.0981 7.6423 47 1 8.5053 -2.7538 5.1720 48 1 9.2299 -1.1530 5.4573 49 1 9.1594 -2.3457 6.7764 50 1 1.8881 -0.5282 4.5956 51 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608815030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:25 Heat of formation + Delta-G solvation = -44.526988 kcal Electronic energy + Delta-G solvation = -26476.930072 eV Core-core repulsion = 22953.912611 eV Total energy + Delta-G solvation = -3523.017461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.87983 -39.09369 -36.26983 -35.78222 -33.13927 -32.62619 -30.98370 -30.78617 -29.28685 -27.43633 -27.24021 -26.69021 -24.69673 -23.01851 -22.59295 -21.62009 -21.00967 -19.99056 -17.88098 -16.90455 -16.44146 -16.28892 -15.67897 -15.11528 -15.05135 -14.79232 -14.29929 -14.08720 -13.86903 -13.82071 -13.46573 -13.44888 -13.20691 -13.02041 -12.76322 -12.48228 -12.33391 -12.08323 -11.89900 -11.78218 -11.60950 -11.53872 -11.42038 -11.34714 -11.10243 -10.96331 -10.88531 -10.82015 -10.73388 -10.64626 -10.52032 -10.33707 -9.98079 -9.51018 -8.95989 -8.88143 -8.48093 -8.39075 -7.59776 -6.00485 -4.03522 1.28373 1.36366 3.31108 3.38120 3.41414 3.50691 3.66371 4.00357 4.42915 4.47450 4.54304 4.84376 4.89974 4.91175 4.96222 5.16624 5.25909 5.27998 5.29709 5.31741 5.34181 5.37771 5.44644 5.49779 5.52595 5.60033 5.63208 5.68521 5.70612 5.79368 5.92320 5.93507 5.93658 6.01520 6.03911 6.14891 6.19218 6.30210 6.36991 6.39051 6.40779 6.54587 6.62560 6.69421 6.97605 6.98244 7.16144 7.51296 7.62510 7.96753 8.29395 8.50899 8.95642 9.16587 9.60511 11.07657 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.002529 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.478864 B =11067.507673 C =11415.812900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.077 4.077 8 C -0.066 4.066 9 C -0.133 4.133 10 C 0.503 3.497 11 O -0.544 6.544 12 N -0.594 5.594 13 C 0.245 3.755 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.133 3.867 23 C -0.162 4.162 24 C -0.157 4.157 25 C -0.115 4.115 26 C -0.114 4.114 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.033 0.967 41 H 0.041 0.959 42 H 0.262 0.738 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.080 0.920 50 H 0.121 0.879 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.379 13.763 -18.484 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.087 4.087 5 C -0.135 4.135 6 C -0.132 4.132 7 C -0.077 4.077 8 C -0.104 4.104 9 C -0.173 4.173 10 C 0.290 3.710 11 O -0.422 6.422 12 N -0.326 5.326 13 C 0.126 3.874 14 C -0.555 4.555 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C 0.028 3.972 23 C -0.220 4.220 24 C -0.215 4.215 25 C -0.133 4.133 26 C -0.132 4.132 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.099 0.901 50 H 0.139 0.861 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.665 13.222 -18.010 24.757 hybrid contribution 0.782 -0.837 -0.193 1.162 sum -9.883 12.385 -18.203 24.133 Atomic orbital electron populations 1.21858 0.94471 1.01995 1.01793 1.20106 0.95848 0.96009 0.95488 1.21856 1.01306 0.95162 1.01790 1.19797 0.98352 0.96022 0.94534 1.21019 0.98360 0.95682 0.98430 1.21095 1.00033 1.00111 0.91934 1.20019 0.97026 0.95655 0.94994 1.20355 0.95971 0.99703 0.94347 1.21666 0.97573 1.00725 0.97333 1.20358 0.81539 0.83833 0.85257 1.90664 1.56947 1.31098 1.63476 1.48339 1.19060 1.34937 1.30259 1.19224 0.95182 0.91480 0.81500 1.21437 1.30193 1.10884 0.93027 0.92446 1.24931 0.96793 0.97681 0.94855 1.69931 1.44848 1.39196 0.99563 0.86554 0.80307 0.82541 0.78362 1.20730 1.21188 1.19964 1.20986 0.93109 0.87706 0.95359 1.22160 1.01641 0.97720 1.00473 1.22138 0.96297 1.00070 1.02986 1.21075 0.98079 0.95541 0.98584 1.20909 1.00445 0.99892 0.91936 0.92453 0.92549 0.92553 0.90673 0.92447 0.92494 0.92557 0.86409 0.86002 0.90304 0.90188 0.89582 0.89742 0.94879 0.94143 0.92842 0.90702 0.91325 0.92339 0.92967 0.92786 0.93333 0.90094 0.86085 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.01 37.16 0.33 -0.64 16 2 C -0.06 -0.42 3.09 -91.78 -0.28 -0.71 16 3 C -0.14 -0.98 9.01 37.16 0.33 -0.64 16 4 C -0.09 -0.84 4.78 -104.63 -0.50 -1.34 16 5 C -0.12 -1.19 9.67 -39.58 -0.38 -1.58 16 6 C -0.11 -1.30 9.70 -39.58 -0.38 -1.69 16 7 C -0.08 -0.94 5.13 -104.62 -0.54 -1.48 16 8 C -0.07 -0.94 4.64 -27.88 -0.13 -1.07 16 9 C -0.13 -1.98 3.99 -27.89 -0.11 -2.09 16 10 C 0.50 10.43 7.67 -10.98 -0.08 10.34 16 11 O -0.54 -13.66 15.56 5.56 0.09 -13.58 16 12 N -0.59 -12.49 2.39 -167.47 -0.40 -12.89 16 13 C 0.25 6.35 4.59 -5.19 -0.02 6.33 16 14 C -0.52 -14.40 7.83 -34.44 -0.27 -14.67 16 15 H 0.06 1.61 7.63 -52.49 -0.40 1.20 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 18 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.13 2.18 3.17 -67.93 -0.22 1.97 16 23 C -0.16 -2.40 9.17 37.16 0.34 -2.06 16 24 C -0.16 -2.61 8.48 37.16 0.32 -2.30 16 25 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 26 C -0.11 -1.13 8.71 -39.58 -0.34 -1.48 16 27 H 0.06 0.38 7.39 -51.93 -0.38 0.00 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.53 7.88 -51.93 -0.41 0.12 16 31 H 0.06 0.39 7.39 -51.93 -0.38 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.12 0.99 7.95 -52.49 -0.42 0.57 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 37 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 38 H 0.09 1.19 7.79 -51.93 -0.40 0.78 16 39 H 0.08 1.10 7.79 -51.92 -0.40 0.70 16 40 H 0.03 0.87 6.42 -51.93 -0.33 0.53 16 41 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.07 1.03 5.77 -51.93 -0.30 0.73 16 44 H 0.07 1.16 6.66 -51.93 -0.35 0.81 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.08 1.59 6.93 -51.93 -0.36 1.23 16 50 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 51 H 0.12 0.97 7.10 -52.49 -0.37 0.59 16 LS Contribution 405.66 15.07 6.11 6.11 Total: -1.00 -32.22 405.66 -10.00 -42.23 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -9.10 Total: 0.26 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -2.42 Total: -13.17 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.34 Total: -38.76 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.22 -10.00 -42.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608815030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.301 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds