Wall clock time and date at job start Tue Mar 31 2020 12:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37106 * 119.99614 * 2 1 4 4 H 1.07998 * 119.99632 * 142.82787 * 3 2 1 5 5 C 1.38945 * 119.99782 * 322.82337 * 3 2 1 6 6 N 1.31414 * 120.00013 * 158.41265 * 5 3 2 7 7 Si 1.86800 * 120.00178 * 338.41112 * 5 3 2 8 8 H 1.48495 * 109.47319 * 95.71902 * 7 5 3 9 9 H 1.48501 * 109.46968 * 215.72184 * 7 5 3 10 10 H 1.48501 * 109.47140 * 335.71912 * 7 5 3 11 11 C 1.34776 * 120.00566 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00360 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99760 * 359.97438 * 11 2 1 14 14 C 1.52998 * 109.47320 * 179.97438 * 13 11 2 15 15 C 1.53001 * 109.47528 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47218 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47010 * 179.97438 * 16 15 14 18 18 C 1.38236 * 120.00258 * 269.72382 * 17 16 15 19 19 C 1.38237 * 119.99733 * 180.32185 * 18 17 16 20 20 C 1.38231 * 120.00377 * 359.96063 * 19 18 17 21 21 C 1.50699 * 120.00319 * 180.02562 * 20 19 18 22 22 C 1.52995 * 109.46888 * 240.02096 * 21 20 19 23 23 C 1.53001 * 109.46960 * 0.02562 * 21 20 19 24 24 C 1.52999 * 109.47634 * 120.01647 * 21 20 19 25 25 C 1.38241 * 119.99997 * 0.02562 * 20 19 18 26 26 C 1.38234 * 119.99777 * 0.02562 * 25 20 19 27 27 H 1.08999 * 109.46776 * 265.13367 * 1 2 3 28 28 H 1.08990 * 109.47596 * 25.13796 * 1 2 3 29 29 H 1.09005 * 109.46552 * 145.14076 * 1 2 3 30 30 H 0.96994 * 120.00274 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.46985 * 59.99920 * 13 11 2 32 32 H 1.08996 * 109.47535 * 300.00200 * 13 11 2 33 33 H 1.09003 * 109.47126 * 60.00044 * 14 13 11 34 34 H 1.08996 * 109.47010 * 300.00559 * 14 13 11 35 35 H 1.09004 * 109.46573 * 59.99773 * 15 14 13 36 36 H 1.08991 * 109.46786 * 300.00334 * 15 14 13 37 37 H 1.09003 * 109.47178 * 59.99936 * 16 15 14 38 38 H 1.08996 * 109.47268 * 300.00262 * 16 15 14 39 39 H 1.07993 * 120.00077 * 0.28175 * 18 17 16 40 40 H 1.08006 * 119.99414 * 179.97438 * 19 18 17 41 41 H 1.09004 * 109.47732 * 59.99587 * 22 21 20 42 42 H 1.09002 * 109.47135 * 179.97438 * 22 21 20 43 43 H 1.09003 * 109.47161 * 299.99630 * 22 21 20 44 44 H 1.09000 * 109.47046 * 59.99898 * 23 21 20 45 45 H 1.09002 * 109.47261 * 180.02562 * 23 21 20 46 46 H 1.09000 * 109.47615 * 300.00569 * 23 21 20 47 47 H 1.08995 * 109.46671 * 59.99824 * 24 21 20 48 48 H 1.09002 * 109.47086 * 180.02562 * 24 21 20 49 49 H 1.09000 * 109.46659 * 300.00277 * 24 21 20 50 50 H 1.08000 * 119.99988 * 179.97438 * 25 20 19 51 51 H 1.08001 * 119.99800 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.0659 1.2824 0.5651 5 6 1.6674 2.2684 -0.7271 6 7 2.0431 3.4891 -0.4177 7 14 0.4839 1.9866 -2.1447 8 1 -0.9113 2.1584 -1.6663 9 1 0.7616 2.9681 -3.2239 10 1 0.6608 0.6092 -2.6708 11 6 2.1390 -1.1671 0.0005 12 8 3.3519 -1.1671 0.0010 13 6 1.3856 -2.4723 0.0017 14 6 2.3799 -3.6351 0.0014 15 6 1.6150 -4.9602 0.0020 16 6 2.6093 -6.1230 0.0011 17 6 1.8558 -7.4282 0.0023 18 6 1.5167 -8.0294 1.1999 19 6 0.8314 -9.2300 1.2008 20 6 0.4846 -9.8289 0.0042 21 6 -0.2630 -11.1373 0.0052 22 6 0.5666 -12.1992 -0.7194 23 6 -0.5118 -11.5814 1.4481 24 6 -1.6029 -10.9599 -0.7118 25 6 0.8235 -9.2274 -1.1935 26 6 1.5097 -8.0275 -1.1945 27 1 -0.3633 -0.0872 1.0240 28 1 -0.3634 0.9302 -0.4365 29 1 -0.3632 -0.8433 -0.5874 30 1 1.7057 4.2437 -0.9250 31 1 0.7586 -2.5306 -0.8880 32 1 0.7593 -2.5295 0.8919 33 1 3.0072 -3.5770 0.8909 34 1 3.0059 -3.5777 -0.8890 35 1 0.9879 -5.0181 -0.8878 36 1 0.9887 -5.0178 0.8922 37 1 3.2367 -6.0653 0.8906 38 1 3.2352 -6.0652 -0.8893 39 1 1.7876 -7.5616 2.1348 40 1 0.5667 -9.6999 2.1366 41 1 1.5212 -12.3256 -0.2086 42 1 0.0261 -13.1457 -0.7183 43 1 0.7438 -11.8827 -1.7474 44 1 -1.1028 -10.8248 1.9643 45 1 -1.0522 -12.5281 1.4489 46 1 0.4426 -11.7078 1.9592 47 1 -1.4257 -10.6435 -1.7397 48 1 -2.1437 -11.9063 -0.7106 49 1 -2.1938 -10.2034 -0.1955 50 1 0.5529 -9.6956 -2.1284 51 1 1.7749 -7.5578 -2.1302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608878737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:03 Heat of formation + Delta-G solvation = -35.703819 kcal Electronic energy + Delta-G solvation = -25598.096449 eV Core-core repulsion = 22075.461590 eV Total energy + Delta-G solvation = -3522.634859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17626 -38.72911 -37.22976 -35.20984 -34.50433 -32.10740 -31.53571 -31.27883 -28.50962 -27.72444 -27.61375 -26.41447 -25.50212 -23.82390 -22.52152 -21.80095 -20.85363 -19.43143 -18.59676 -17.01950 -16.73185 -15.96633 -15.90578 -15.48697 -15.19942 -15.08504 -14.63382 -14.35922 -14.20192 -13.89330 -13.76001 -13.58660 -13.20481 -12.88586 -12.73992 -12.65588 -12.52228 -12.31113 -12.27302 -12.07465 -11.96648 -11.88338 -11.65167 -11.60317 -11.32468 -11.13180 -11.03256 -10.86158 -10.76408 -10.69593 -10.60469 -10.31746 -10.30419 -9.90019 -9.04720 -9.04211 -8.62751 -8.41669 -7.69698 -6.36448 -3.92886 1.20121 1.27280 3.04383 3.23176 3.27804 3.58950 3.80433 4.16982 4.25634 4.39187 4.46673 4.63153 4.76176 4.77485 4.86540 4.93923 5.01736 5.09583 5.19281 5.19754 5.24385 5.30121 5.38156 5.40294 5.42172 5.50125 5.51266 5.58519 5.61950 5.66264 5.70999 5.79191 5.79877 5.87184 5.88192 5.92916 5.93820 6.00806 6.03437 6.10902 6.17843 6.23269 6.31815 6.33746 6.46098 6.49704 6.60726 6.68194 6.88374 7.58696 8.32728 8.55985 9.01400 9.36344 9.83399 10.75992 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027893 B = 0.001929 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.596648 B =14514.780357 C =14864.379669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.475 5.475 3 C -0.316 4.316 4 H 0.104 0.896 5 C 0.056 3.944 6 N -0.867 5.867 7 Si 0.881 3.119 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.265 1.265 11 C 0.462 3.538 12 O -0.568 6.568 13 C -0.136 4.136 14 C -0.100 4.100 15 C -0.112 4.112 16 C -0.083 4.083 17 C -0.078 4.078 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.080 4.080 21 C -0.030 4.030 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.114 4.114 26 C -0.116 4.116 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.273 0.727 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.117 0.883 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.411 -30.526 0.363 31.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.197 5.197 3 C -0.443 4.443 4 H 0.122 0.878 5 C -0.149 4.149 6 N -0.503 5.503 7 Si 0.709 3.291 8 H -0.204 1.204 9 H -0.215 1.215 10 H -0.190 1.190 11 C 0.251 3.749 12 O -0.450 6.450 13 C -0.176 4.176 14 C -0.138 4.138 15 C -0.149 4.149 16 C -0.120 4.120 17 C -0.078 4.078 18 C -0.134 4.134 19 C -0.138 4.138 20 C -0.080 4.080 21 C -0.030 4.030 22 C -0.195 4.195 23 C -0.201 4.201 24 C -0.196 4.196 25 C -0.132 4.132 26 C -0.134 4.134 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.135 0.865 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.802 -30.293 0.331 31.284 hybrid contribution -0.829 0.187 -0.811 1.175 sum -8.631 -30.106 -0.481 31.322 Atomic orbital electron populations 1.21973 0.83538 1.01446 1.00889 1.43730 1.03979 1.05887 1.66149 1.19063 1.10053 0.85620 1.29559 0.87821 1.25380 0.97531 0.94805 0.97169 1.69759 1.44078 0.98054 1.38426 0.86904 0.80168 0.78919 0.83105 1.20352 1.21519 1.18971 1.20361 0.88232 0.84889 0.81423 1.90542 1.14035 1.87142 1.53244 1.21632 0.99188 0.94130 1.02670 1.21300 0.97493 0.91579 1.03456 1.21599 0.97763 0.93511 1.02050 1.20654 0.97359 0.90819 1.03184 1.19994 0.98330 0.96429 0.93074 1.21074 0.99048 0.95573 0.97710 1.21144 0.99118 0.95742 0.97771 1.19747 0.98983 0.96016 0.93235 1.19490 0.94882 0.92292 0.96311 1.21887 0.99683 0.97705 1.00241 1.21960 1.01737 1.01137 0.95261 1.21889 0.95669 1.01693 1.00302 1.20926 0.99125 0.95716 0.97454 1.21052 0.99040 0.95555 0.97750 0.93118 0.91764 0.92747 0.91673 0.90412 0.90396 0.91369 0.91399 0.92074 0.92024 0.90890 0.90902 0.86147 0.85885 0.92521 0.92448 0.92451 0.92227 0.92462 0.92284 0.92438 0.92445 0.92451 0.86466 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 8.78 59.85 0.53 1.83 16 2 N -0.48 -11.81 2.59 -122.19 -0.32 -12.13 16 3 C -0.32 -9.20 9.37 -14.93 -0.14 -9.34 16 4 H 0.10 3.39 7.90 -52.49 -0.41 2.98 16 5 C 0.06 1.59 5.29 -17.47 -0.09 1.50 16 6 N -0.87 -25.54 13.96 55.50 0.77 -24.77 16 7 Si 0.88 20.93 24.96 -169.99 -4.24 16.69 16 8 H -0.28 -6.07 6.69 56.52 0.38 -5.70 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 C 0.46 10.91 7.63 -10.99 -0.08 10.83 16 12 O -0.57 -15.60 15.85 5.55 0.09 -15.51 16 13 C -0.14 -2.30 4.32 -27.88 -0.12 -2.42 16 14 C -0.10 -1.52 4.50 -26.73 -0.12 -1.64 16 15 C -0.11 -1.31 5.20 -26.73 -0.14 -1.44 16 16 C -0.08 -0.88 5.35 -27.89 -0.15 -1.03 16 17 C -0.08 -0.82 5.13 -104.62 -0.54 -1.35 16 18 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 19 C -0.12 -1.09 8.98 -39.58 -0.36 -1.44 16 20 C -0.08 -0.70 4.76 -104.62 -0.50 -1.20 16 21 C -0.03 -0.20 0.85 -155.66 -0.13 -0.34 16 22 C -0.14 -0.86 8.29 37.16 0.31 -0.55 16 23 C -0.14 -0.86 7.13 37.16 0.27 -0.60 16 24 C -0.14 -0.89 8.29 37.16 0.31 -0.58 16 25 C -0.11 -1.04 8.71 -39.58 -0.34 -1.39 16 26 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.36 3.42 -51.93 -0.18 1.18 16 29 H 0.05 0.90 6.64 -51.93 -0.34 0.56 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.08 1.20 7.41 -51.93 -0.38 0.81 16 32 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 33 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 34 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.12 0.92 5.90 -52.48 -0.31 0.61 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.35 7.39 -51.93 -0.38 -0.03 16 44 H 0.06 0.36 7.51 -51.93 -0.39 -0.03 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.35 7.51 -51.93 -0.39 -0.04 16 47 H 0.06 0.37 7.39 -51.93 -0.38 -0.02 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.12 0.89 7.10 -52.49 -0.37 0.52 16 51 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -32.88 398.45 -8.81 -41.69 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -9.04 Total: 0.26 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.07 Total: -12.23 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.46 Total: -36.89 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.09 Total: -15.51 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.24 Total: 16.69 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.88 -8.81 -41.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608878737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.984 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds