Wall clock time and date at job start Tue Mar 31 2020 11:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00112 * 2 1 4 4 C 1.38214 * 119.99927 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99928 * 0.28712 * 4 3 2 6 6 C 1.38217 * 119.99916 * 359.50246 * 5 4 3 7 7 C 1.50697 * 119.99886 * 180.26099 * 6 5 4 8 8 C 1.53004 * 109.46913 * 270.21565 * 7 6 5 9 9 C 1.50702 * 109.46909 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00347 * 354.41300 * 9 8 7 11 11 N 1.34777 * 119.99760 * 174.41978 * 9 8 7 12 12 C 1.46503 * 120.00058 * 185.43553 * 11 9 8 13 13 C 1.50701 * 109.46564 * 90.00128 * 12 11 9 14 14 H 1.08000 * 120.00639 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99560 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99525 * 180.02562 * 15 13 12 17 17 Si 1.86790 * 120.00174 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46984 * 90.00273 * 17 15 13 19 19 H 1.48498 * 109.47409 * 210.00573 * 17 15 13 20 20 H 1.48503 * 109.47458 * 330.00885 * 17 15 13 21 21 C 1.46506 * 119.99998 * 5.44068 * 11 9 8 22 22 C 1.52999 * 109.46929 * 95.81147 * 21 11 9 23 23 C 1.52999 * 109.47462 * 54.26260 * 22 21 11 24 24 C 1.53000 * 109.46532 * 174.26255 * 22 21 11 25 25 C 1.53000 * 109.47168 * 294.25727 * 22 21 11 26 26 C 1.38217 * 120.00028 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47104 * 89.99304 * 1 2 3 28 28 H 1.09002 * 109.47243 * 210.00072 * 1 2 3 29 29 H 1.09003 * 109.46871 * 329.99959 * 1 2 3 30 30 H 1.07997 * 120.00011 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.99711 * 179.97438 * 4 3 2 32 32 H 1.08001 * 119.99588 * 179.71909 * 5 4 3 33 33 H 1.09007 * 109.47387 * 30.21153 * 7 6 5 34 34 H 1.08998 * 109.47508 * 150.21047 * 7 6 5 35 35 H 1.08995 * 109.46605 * 299.99546 * 8 7 6 36 36 H 1.08999 * 109.47601 * 59.99985 * 8 7 6 37 37 H 1.08995 * 109.47166 * 210.00014 * 12 11 9 38 38 H 1.09002 * 109.47131 * 330.00502 * 12 11 9 39 39 H 0.96998 * 119.99426 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.46795 * 215.81214 * 21 11 9 41 41 H 1.08993 * 109.46717 * 335.80955 * 21 11 9 42 42 H 1.09007 * 109.47093 * 59.99937 * 23 22 21 43 43 H 1.08997 * 109.47362 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47271 * 299.99824 * 23 22 21 45 45 H 1.09004 * 109.47480 * 59.99935 * 24 22 21 46 46 H 1.09005 * 109.47125 * 179.97438 * 24 22 21 47 47 H 1.09007 * 109.47385 * 299.99672 * 24 22 21 48 48 H 1.08999 * 109.46463 * 64.13451 * 25 22 21 49 49 H 1.08997 * 109.46872 * 184.13273 * 25 22 21 50 50 H 1.08994 * 109.47286 * 304.13760 * 25 22 21 51 51 H 1.07998 * 119.99549 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3340 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 6 5.3421 -4.2491 -1.4431 10 8 5.7334 -4.7235 -0.3978 11 7 5.5806 -4.8894 -2.6048 12 6 6.2063 -6.2141 -2.5961 13 6 5.1373 -7.2739 -2.5229 14 1 4.0961 -6.9892 -2.4870 15 6 5.4886 -8.6070 -2.5018 16 7 4.5558 -9.5319 -2.4385 17 14 7.2894 -9.0995 -2.5648 18 1 7.8257 -9.1924 -1.1831 19 1 7.4189 -10.4179 -3.2357 20 1 8.0553 -8.0796 -3.3254 21 6 5.2144 -4.2606 -3.8764 22 6 6.4342 -3.5464 -4.4621 23 6 7.6008 -4.5310 -4.5656 24 6 6.0925 -3.0124 -5.8545 25 6 6.8290 -2.3817 -3.5519 26 6 2.1981 -1.1970 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6583 2.1326 0.0004 31 1 4.1204 2.1326 0.0001 32 1 5.3517 0.0000 -0.0091 33 1 5.2865 -2.3718 0.5133 34 1 3.7450 -3.2618 0.5133 35 1 3.6367 -3.0740 -1.9569 36 1 5.1782 -2.1841 -1.9569 37 1 6.7880 -6.3472 -3.5082 38 1 6.8630 -6.3001 -1.7304 39 1 4.8029 -10.4697 -2.4233 40 1 4.8711 -5.0247 -4.5739 41 1 4.4164 -3.5377 -3.7076 42 1 7.3195 -5.3608 -5.2141 43 1 8.4696 -4.0223 -4.9832 44 1 7.8442 -4.9115 -3.5736 45 1 5.2613 -2.3110 -5.7809 46 1 6.9613 -2.5032 -6.2717 47 1 5.8112 -3.8422 -6.5031 48 1 7.1427 -2.7685 -2.5824 49 1 7.6512 -1.8285 -4.0058 50 1 5.9743 -1.7184 -3.4192 51 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609191572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:30 Heat of formation + Delta-G solvation = -33.782318 kcal Electronic energy + Delta-G solvation = -27405.293538 eV Core-core repulsion = 23882.742002 eV Total energy + Delta-G solvation = -3522.551537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.87968 -39.27579 -37.13163 -34.44680 -33.78672 -32.44430 -32.26518 -30.15227 -28.32046 -27.23334 -26.99516 -26.95922 -25.64933 -24.48100 -22.22899 -21.79299 -20.28098 -19.31573 -17.86189 -17.01460 -16.71813 -16.23411 -15.80034 -15.42173 -15.17323 -14.74448 -14.26771 -14.02186 -13.98843 -13.81713 -13.71798 -13.25278 -13.07133 -12.84821 -12.64262 -12.54260 -12.38150 -12.29048 -12.24455 -11.85128 -11.69311 -11.50508 -11.44525 -11.38887 -11.15916 -11.04636 -10.89572 -10.83072 -10.63664 -10.53058 -10.44035 -10.25466 -10.02146 -9.48882 -9.02432 -8.80466 -8.58699 -8.56269 -7.62373 -6.07365 -4.05191 1.29369 1.33677 3.29497 3.35441 3.37573 3.39208 3.65691 3.91555 4.40729 4.68778 4.72956 4.81895 4.95174 4.96919 5.03243 5.09861 5.20750 5.25138 5.27196 5.31128 5.37476 5.44877 5.48607 5.57085 5.62429 5.65755 5.66732 5.70149 5.77311 5.86800 5.93563 5.96121 6.02600 6.06372 6.10416 6.14515 6.16407 6.26110 6.33480 6.35952 6.41227 6.50673 6.51701 6.60659 6.67653 6.79479 6.97657 6.99708 7.40977 7.65051 8.31436 8.49730 8.95141 9.03831 9.53658 11.06181 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013730 B = 0.003560 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.886339 B = 7863.533934 C = 8911.885797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.131 4.131 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.069 4.069 7 C -0.067 4.067 8 C -0.143 4.143 9 C 0.510 3.490 10 O -0.545 6.545 11 N -0.588 5.588 12 C 0.208 3.792 13 C -0.528 4.528 14 H 0.073 0.927 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.874 3.126 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.120 3.880 22 C -0.087 4.087 23 C -0.145 4.145 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.117 4.117 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.034 0.966 39 H 0.264 0.736 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.052 0.948 50 H 0.056 0.944 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 21.945 -1.881 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.134 4.134 5 C -0.142 4.142 6 C -0.069 4.069 7 C -0.105 4.105 8 C -0.182 4.182 9 C 0.298 3.702 10 O -0.423 6.423 11 N -0.319 5.319 12 C 0.088 3.912 13 C -0.566 4.566 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.701 3.299 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.005 4.005 22 C -0.088 4.088 23 C -0.203 4.203 24 C -0.195 4.195 25 C -0.201 4.201 26 C -0.135 4.135 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.631 21.457 -1.326 21.559 hybrid contribution 0.805 -0.448 -0.144 0.932 sum -0.826 21.008 -1.470 21.076 Atomic orbital electron populations 1.20794 0.91351 1.02671 1.02314 1.19914 0.95979 0.93179 0.99548 1.20970 0.94284 0.97300 1.02312 1.21092 0.94270 0.97859 1.00208 1.21067 0.99880 0.91963 1.01250 1.20002 0.93698 0.95215 0.97973 1.20368 1.00683 0.93193 0.96243 1.21918 1.01585 0.96526 0.98217 1.20334 0.80224 0.85824 0.83859 1.90654 1.52337 1.68127 1.31228 1.47820 1.60405 1.19088 1.04575 1.19850 0.94470 0.79209 0.97688 1.21375 0.94436 0.89837 1.50976 0.90871 1.24846 0.97232 0.96373 0.94548 1.69901 1.32621 1.00560 1.50647 0.86885 0.85936 0.78193 0.78918 1.19960 1.21130 1.18969 1.21570 0.95115 0.97107 0.86679 1.20998 0.96762 0.95728 0.95329 1.22066 0.96708 0.98610 1.02867 1.21804 1.01121 1.00847 0.95728 1.22027 1.00818 0.97337 0.99868 1.21020 0.93711 0.97691 1.01089 0.91195 0.91464 0.91756 0.86492 0.86316 0.86142 0.90206 0.90223 0.89533 0.88648 0.94208 0.94774 0.92631 0.90019 0.91100 0.92271 0.93530 0.91407 0.92765 0.92775 0.92364 0.92423 0.92927 0.92554 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 2 C -0.09 -0.91 5.88 -104.62 -0.62 -1.52 16 3 C -0.13 -1.28 9.70 -39.58 -0.38 -1.67 16 4 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 6 C -0.07 -0.85 5.13 -104.63 -0.54 -1.39 16 7 C -0.07 -0.95 4.65 -27.88 -0.13 -1.08 16 8 C -0.14 -2.09 4.04 -27.88 -0.11 -2.21 16 9 C 0.51 10.17 6.40 -10.98 -0.07 10.10 16 10 O -0.55 -13.19 15.54 5.56 0.09 -13.10 16 11 N -0.59 -11.77 2.00 -175.05 -0.35 -12.12 16 12 C 0.21 5.01 3.00 -5.19 -0.02 4.99 16 13 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 14 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 16 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 17 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 18 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 21 C 0.12 1.88 4.58 -4.04 -0.02 1.86 16 22 C -0.09 -1.14 0.85 -154.51 -0.13 -1.27 16 23 C -0.15 -2.14 6.98 37.16 0.26 -1.88 16 24 C -0.14 -1.46 8.47 37.16 0.31 -1.15 16 25 C -0.14 -1.73 6.84 37.16 0.25 -1.47 16 26 C -0.12 -1.39 9.36 -39.58 -0.37 -1.76 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.08 1.17 7.98 -51.93 -0.41 0.75 16 34 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 35 H 0.09 1.20 7.34 -51.93 -0.38 0.82 16 36 H 0.10 1.21 4.67 -51.93 -0.24 0.96 16 37 H 0.04 0.91 4.37 -51.93 -0.23 0.68 16 38 H 0.03 0.89 6.78 -51.93 -0.35 0.54 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 41 H 0.07 0.96 6.11 -51.93 -0.32 0.64 16 42 H 0.06 0.90 7.72 -51.93 -0.40 0.50 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.17 5.76 -51.93 -0.30 0.87 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.81 6.74 -51.93 -0.35 0.46 16 49 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.60 6.49 -51.93 -0.34 0.26 16 51 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 394.57 15.07 5.95 5.95 Total: -1.00 -33.29 394.57 -9.45 -42.74 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.82 Total: 2.31 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.42 Total: -15.76 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.42 Total: -39.10 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.29 -9.45 -42.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609191572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.958 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds