Wall clock time and date at job start Tue Mar 31 2020 11:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00112 * 2 1 4 4 C 1.38214 * 119.99927 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99928 * 0.28712 * 4 3 2 6 6 C 1.38217 * 119.99916 * 359.50246 * 5 4 3 7 7 C 1.50697 * 119.99886 * 180.26099 * 6 5 4 8 8 C 1.53004 * 109.46913 * 270.21565 * 7 6 5 9 9 C 1.50702 * 109.46909 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00347 * 354.41300 * 9 8 7 11 11 N 1.34777 * 119.99760 * 174.41978 * 9 8 7 12 12 C 1.46503 * 120.00058 * 185.43553 * 11 9 8 13 13 C 1.50701 * 109.46564 * 90.00128 * 12 11 9 14 14 H 1.08000 * 120.00639 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99560 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99525 * 180.02562 * 15 13 12 17 17 Si 1.86790 * 120.00174 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46984 * 90.00273 * 17 15 13 19 19 H 1.48498 * 109.47409 * 210.00573 * 17 15 13 20 20 H 1.48503 * 109.47458 * 330.00885 * 17 15 13 21 21 C 1.46506 * 119.99998 * 5.44068 * 11 9 8 22 22 C 1.52999 * 109.46929 * 95.81147 * 21 11 9 23 23 C 1.52999 * 109.47462 * 54.26260 * 22 21 11 24 24 C 1.53000 * 109.46532 * 174.26255 * 22 21 11 25 25 C 1.53000 * 109.47168 * 294.25727 * 22 21 11 26 26 C 1.38217 * 120.00028 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47104 * 89.99304 * 1 2 3 28 28 H 1.09002 * 109.47243 * 210.00072 * 1 2 3 29 29 H 1.09003 * 109.46871 * 329.99959 * 1 2 3 30 30 H 1.07997 * 120.00011 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.99711 * 179.97438 * 4 3 2 32 32 H 1.08001 * 119.99588 * 179.71909 * 5 4 3 33 33 H 1.09007 * 109.47387 * 30.21153 * 7 6 5 34 34 H 1.08998 * 109.47508 * 150.21047 * 7 6 5 35 35 H 1.08995 * 109.46605 * 299.99546 * 8 7 6 36 36 H 1.08999 * 109.47601 * 59.99985 * 8 7 6 37 37 H 1.08995 * 109.47166 * 210.00014 * 12 11 9 38 38 H 1.09002 * 109.47131 * 330.00502 * 12 11 9 39 39 H 0.96998 * 119.99426 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.46795 * 215.81214 * 21 11 9 41 41 H 1.08993 * 109.46717 * 335.80955 * 21 11 9 42 42 H 1.09007 * 109.47093 * 59.99937 * 23 22 21 43 43 H 1.08997 * 109.47362 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47271 * 299.99824 * 23 22 21 45 45 H 1.09004 * 109.47480 * 59.99935 * 24 22 21 46 46 H 1.09005 * 109.47125 * 179.97438 * 24 22 21 47 47 H 1.09007 * 109.47385 * 299.99672 * 24 22 21 48 48 H 1.08999 * 109.46463 * 64.13451 * 25 22 21 49 49 H 1.08997 * 109.46872 * 184.13273 * 25 22 21 50 50 H 1.08994 * 109.47286 * 304.13760 * 25 22 21 51 51 H 1.07998 * 119.99549 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3340 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 6 5.3421 -4.2491 -1.4431 10 8 5.7334 -4.7235 -0.3978 11 7 5.5806 -4.8894 -2.6048 12 6 6.2063 -6.2141 -2.5961 13 6 5.1373 -7.2739 -2.5229 14 1 4.0961 -6.9892 -2.4870 15 6 5.4886 -8.6070 -2.5018 16 7 4.5558 -9.5319 -2.4385 17 14 7.2894 -9.0995 -2.5648 18 1 7.8257 -9.1924 -1.1831 19 1 7.4189 -10.4179 -3.2357 20 1 8.0553 -8.0796 -3.3254 21 6 5.2144 -4.2606 -3.8764 22 6 6.4342 -3.5464 -4.4621 23 6 7.6008 -4.5310 -4.5656 24 6 6.0925 -3.0124 -5.8545 25 6 6.8290 -2.3817 -3.5519 26 6 2.1981 -1.1970 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6583 2.1326 0.0004 31 1 4.1204 2.1326 0.0001 32 1 5.3517 0.0000 -0.0091 33 1 5.2865 -2.3718 0.5133 34 1 3.7450 -3.2618 0.5133 35 1 3.6367 -3.0740 -1.9569 36 1 5.1782 -2.1841 -1.9569 37 1 6.7880 -6.3472 -3.5082 38 1 6.8630 -6.3001 -1.7304 39 1 4.8029 -10.4697 -2.4233 40 1 4.8711 -5.0247 -4.5739 41 1 4.4164 -3.5377 -3.7076 42 1 7.3195 -5.3608 -5.2141 43 1 8.4696 -4.0223 -4.9832 44 1 7.8442 -4.9115 -3.5736 45 1 5.2613 -2.3110 -5.7809 46 1 6.9613 -2.5032 -6.2717 47 1 5.8112 -3.8422 -6.5031 48 1 7.1427 -2.7685 -2.5824 49 1 7.6512 -1.8285 -4.0058 50 1 5.9743 -1.7184 -3.4192 51 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609191572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:29 Heat of formation + Delta-G solvation = -51.272501 kcal Electronic energy + Delta-G solvation = -27406.051970 eV Core-core repulsion = 23882.742002 eV Total energy + Delta-G solvation = -3523.309968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25927 -40.23757 -38.47999 -35.82984 -35.18639 -34.36875 -33.18374 -31.45444 -29.91745 -28.20588 -28.11441 -27.72339 -26.99792 -25.84852 -23.80395 -22.81711 -21.23176 -20.62992 -19.25634 -19.15228 -17.99865 -17.21557 -17.11916 -17.02371 -16.36426 -15.98101 -15.57812 -15.23110 -15.11273 -15.03678 -14.67363 -14.57096 -14.33405 -14.02272 -13.94378 -13.75942 -13.68448 -13.45839 -13.27580 -13.03177 -12.95512 -12.77596 -12.62216 -12.57971 -12.51270 -12.37301 -12.04950 -12.03060 -11.84389 -11.79456 -11.73913 -11.68994 -11.53119 -11.40369 -10.82486 -10.64007 -9.65992 -9.43890 -9.32028 -8.35544 -6.39324 0.46478 0.52114 1.29088 1.33142 1.41401 1.80785 2.28498 2.33682 2.88019 2.99059 3.57367 3.86044 3.88284 3.89722 4.00752 4.07390 4.10100 4.19128 4.24963 4.33173 4.46940 4.52273 4.56813 4.62012 4.62256 4.75537 4.76510 4.81637 4.85070 4.88541 4.92224 4.93756 4.96182 4.98933 5.05052 5.08826 5.12567 5.13047 5.21158 5.25588 5.35298 5.36948 5.45660 5.46949 5.55523 5.61922 5.69550 5.73032 5.78457 6.17927 6.24418 6.61672 6.73586 7.20882 7.44055 8.81532 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013730 B = 0.003560 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.886339 B = 7863.533934 C = 8911.885797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.115 4.115 5 C -0.131 4.131 6 C -0.082 4.082 7 C -0.060 4.060 8 C -0.126 4.126 9 C 0.501 3.499 10 O -0.598 6.598 11 N -0.592 5.592 12 C 0.222 3.778 13 C -0.536 4.536 14 H 0.028 0.972 15 C 0.013 3.987 16 N -0.945 5.945 17 Si 0.942 3.058 18 H -0.277 1.277 19 H -0.273 1.273 20 H -0.238 1.238 21 C 0.112 3.888 22 C -0.081 4.081 23 C -0.147 4.147 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.136 4.136 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.131 0.869 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.058 0.942 38 H 0.011 0.989 39 H 0.268 0.732 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.032 0.968 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 25.499 -3.478 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.133 4.133 5 C -0.149 4.149 6 C -0.082 4.082 7 C -0.098 4.098 8 C -0.165 4.165 9 C 0.291 3.709 10 O -0.480 6.480 11 N -0.322 5.322 12 C 0.100 3.900 13 C -0.575 4.575 14 H 0.047 0.953 15 C -0.185 4.185 16 N -0.585 5.585 17 Si 0.764 3.236 18 H -0.203 1.203 19 H -0.198 1.198 20 H -0.161 1.161 21 C -0.010 4.010 22 C -0.083 4.083 23 C -0.205 4.205 24 C -0.189 4.189 25 C -0.197 4.197 26 C -0.154 4.154 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.030 0.970 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.051 0.949 49 H 0.091 0.909 50 H 0.093 0.907 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.753 25.052 -2.966 25.238 hybrid contribution 0.411 -1.516 0.383 1.616 sum -0.342 23.536 -2.583 23.680 Atomic orbital electron populations 1.20837 0.89842 1.03378 1.03022 1.20201 0.97246 0.92918 0.98927 1.21336 0.94552 0.97974 1.00985 1.21423 0.94549 0.98372 0.98928 1.21232 1.00549 0.91874 1.01220 1.19812 0.93814 0.94546 0.99987 1.20217 1.00152 0.93918 0.95475 1.21877 1.01459 0.93958 0.99214 1.21281 0.79567 0.87178 0.82898 1.90617 1.54454 1.69853 1.33038 1.47878 1.59920 1.17827 1.06531 1.19474 0.92951 0.80277 0.97284 1.21636 0.93575 0.91541 1.50716 0.95333 1.25797 1.02450 0.96268 0.93995 1.70048 1.35292 1.01135 1.52021 0.85803 0.79812 0.78858 0.79090 1.20320 1.19832 1.16130 1.21891 0.97465 0.97237 0.84423 1.20966 0.94612 0.95532 0.97152 1.22058 0.98439 0.99024 1.00934 1.21762 1.02532 1.01104 0.93505 1.21998 1.02300 0.97048 0.98371 1.21100 0.93746 0.98308 1.02221 0.90403 0.91762 0.90104 0.83942 0.83657 0.85136 0.91059 0.92784 0.88421 0.85777 0.92390 0.97046 0.92312 0.91538 0.88573 0.93265 0.91135 0.94398 0.91063 0.91075 0.92765 0.94887 0.90883 0.90729 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.23 0.71 -0.92 16 2 C -0.09 -1.79 5.88 -19.87 -0.12 -1.90 16 3 C -0.13 -2.16 9.70 22.27 0.22 -1.94 16 4 C -0.11 -1.92 10.05 22.27 0.22 -1.69 16 5 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 6 C -0.08 -1.97 5.13 -19.87 -0.10 -2.07 16 7 C -0.06 -1.75 4.65 29.85 0.14 -1.61 16 8 C -0.13 -3.67 4.04 29.85 0.12 -3.55 16 9 C 0.50 20.65 6.40 87.66 0.56 21.22 16 10 O -0.60 -30.54 15.54 -3.03 -0.05 -30.59 16 11 N -0.59 -24.28 2.00 -826.14 -1.65 -25.93 16 12 C 0.22 11.03 3.00 85.63 0.26 11.29 16 13 C -0.54 -32.12 9.94 25.60 0.25 -31.87 16 14 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 15 C 0.01 0.77 5.47 84.66 0.46 1.24 16 16 N -0.94 -60.55 13.96 21.45 0.30 -60.25 16 17 Si 0.94 45.39 27.47 68.60 1.88 47.28 16 18 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 21 C 0.11 3.45 4.58 86.38 0.40 3.84 16 22 C -0.08 -1.96 0.85 -52.18 -0.04 -2.00 16 23 C -0.15 -4.12 6.98 71.98 0.50 -3.61 16 24 C -0.13 -2.33 8.47 71.98 0.61 -1.72 16 25 C -0.14 -2.96 6.84 71.98 0.49 -2.47 16 26 C -0.14 -3.17 9.36 22.27 0.21 -2.96 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 29 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 30 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.07 2.17 7.98 -2.38 -0.02 2.15 16 34 H 0.05 1.82 8.09 -2.39 -0.02 1.80 16 35 H 0.10 2.65 7.34 -2.39 -0.02 2.64 16 36 H 0.12 2.90 4.67 -2.39 -0.01 2.88 16 37 H 0.06 2.67 4.37 -2.39 -0.01 2.66 16 38 H 0.01 0.62 6.78 -2.39 -0.02 0.61 16 39 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 40 H 0.07 2.24 8.11 -2.39 -0.02 2.22 16 41 H 0.10 2.43 6.11 -2.39 -0.01 2.41 16 42 H 0.05 1.44 7.72 -2.38 -0.02 1.42 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.04 1.27 5.76 -2.39 -0.01 1.26 16 45 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.07 1.06 8.14 -2.38 -0.02 1.05 16 47 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 48 H 0.03 0.87 6.74 -2.39 -0.02 0.85 16 49 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.07 1.29 6.49 -2.39 -0.02 1.28 16 51 H 0.11 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -77.36 394.57 6.43 -70.93 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.83 Total: 21.75 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 5.11 Total: -23.19 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -1.35 Total: -86.18 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.05 Total: -30.59 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.28 kcal Total: -77.36 6.43 -70.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609191572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.659 kcal (2) G-P(sol) polarization free energy of solvation -77.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds