Wall clock time and date at job start Tue Mar 31 2020 11:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46898 * 2 1 4 4 C 1.38237 * 119.99782 * 90.00238 * 3 2 1 5 5 C 1.38236 * 119.99996 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99833 * 359.95807 * 5 4 3 7 7 C 1.50695 * 119.99975 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47521 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47082 * 119.99828 * 7 6 5 10 10 C 1.52996 * 109.47310 * 239.99797 * 7 6 5 11 11 C 1.50702 * 109.47159 * 174.99934 * 10 7 6 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 7 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 7 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.50697 * 109.46949 * 90.00203 * 14 13 11 16 16 H 1.08004 * 120.00186 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00081 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00096 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47135 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47061 * 119.99902 * 19 17 15 22 22 H 1.48503 * 109.47075 * 240.00004 * 19 17 15 23 23 C 1.46506 * 120.00264 * 0.28128 * 13 11 10 24 24 C 1.52992 * 109.47288 * 119.99477 * 23 13 11 25 25 C 1.52998 * 109.46848 * 239.99814 * 23 13 11 26 26 C 1.38235 * 120.00003 * 0.27565 * 6 5 4 27 27 C 1.38234 * 120.00192 * 269.98000 * 3 2 1 28 28 H 1.09007 * 109.46775 * 299.99851 * 1 2 3 29 29 H 1.08997 * 109.47422 * 59.99591 * 1 2 3 30 30 H 1.09000 * 109.46931 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47149 * 240.00446 * 2 1 3 32 32 H 1.08996 * 109.47087 * 119.99712 * 2 1 3 33 33 H 1.08001 * 120.00191 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.00143 * 179.97438 * 5 4 3 35 35 H 1.09007 * 109.47141 * 60.00329 * 9 7 6 36 36 H 1.09005 * 109.47435 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.47522 * 300.00326 * 9 7 6 38 38 H 1.09004 * 109.47066 * 55.00137 * 10 7 6 39 39 H 1.08994 * 109.47405 * 294.99967 * 10 7 6 40 40 H 1.09001 * 109.47567 * 210.00057 * 14 13 11 41 41 H 1.09005 * 109.47076 * 330.00563 * 14 13 11 42 42 H 0.96991 * 119.99957 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.46745 * 359.97438 * 23 13 11 44 44 H 1.09005 * 109.47280 * 60.00263 * 24 23 13 45 45 H 1.09002 * 109.46985 * 180.02562 * 24 23 13 46 46 H 1.09000 * 109.47344 * 300.00445 * 24 23 13 47 47 H 1.09006 * 109.47195 * 59.99998 * 25 23 13 48 48 H 1.09002 * 109.46792 * 179.97438 * 25 23 13 49 49 H 1.08995 * 109.47040 * 299.99526 * 25 23 13 50 50 H 1.08001 * 120.00254 * 179.73149 * 26 6 5 51 51 H 1.08003 * 119.99880 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9556 4.0268 0.0001 7 6 3.4579 5.4476 0.0001 8 1 3.5783 5.7905 1.0277 9 6 4.8065 5.5118 -0.7197 10 6 2.4509 6.3446 -0.7226 11 6 2.8915 7.7818 -0.6163 12 8 3.9109 8.0612 -0.0215 13 7 2.1560 8.7562 -1.1874 14 6 2.5875 10.1527 -1.0892 15 6 3.4776 10.4868 -2.2584 16 1 3.6994 9.7342 -3.0007 17 6 4.0090 11.7532 -2.3807 18 7 3.7394 12.6695 -1.4766 19 14 5.1118 12.1675 -3.8304 20 1 5.2588 10.9715 -4.6983 21 1 4.5064 13.2755 -4.6120 22 1 6.4474 12.5847 -3.3330 23 6 0.9249 8.4188 -1.9063 24 6 -0.2607 9.1265 -1.2475 25 6 1.0443 8.8720 -3.3627 26 6 2.7206 3.3769 -1.1971 27 6 2.2631 2.0724 -1.1971 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0824 1.5635 2.1325 34 1 2.9036 3.8849 2.1326 35 1 4.6865 5.1689 -1.7475 36 1 5.1696 6.5396 -0.7201 37 1 5.5239 4.8728 -0.2049 38 1 1.4685 6.2309 -0.2641 39 1 2.3971 6.0578 -1.7728 40 1 1.7140 10.8046 -1.0998 41 1 3.1384 10.2983 -0.1600 42 1 4.1128 13.5605 -1.5628 43 1 0.7688 7.3404 -1.8733 44 1 -0.1044 10.2048 -1.2808 45 1 -1.1767 8.8751 -1.7821 46 1 -0.3457 8.8037 -0.2099 47 1 1.8891 8.3676 -3.8321 48 1 0.1285 8.6205 -3.8977 49 1 1.2006 9.9502 -3.3961 50 1 2.8974 3.8871 -2.1324 51 1 2.0838 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609990468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:21 Heat of formation + Delta-G solvation = -41.478987 kcal Electronic energy + Delta-G solvation = -27008.310481 eV Core-core repulsion = 23485.425192 eV Total energy + Delta-G solvation = -3522.885289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.96698 -39.05679 -36.31808 -35.39684 -33.11767 -32.70267 -30.97023 -30.79737 -29.11737 -28.16726 -26.76277 -26.36367 -24.37615 -22.89704 -22.83170 -21.66043 -21.10349 -19.89089 -17.82874 -16.98711 -16.42877 -15.95848 -15.78286 -15.14481 -14.97952 -14.73366 -14.23610 -14.09023 -13.89834 -13.59064 -13.45251 -13.36238 -13.14672 -13.03143 -12.78697 -12.56541 -12.31623 -11.96375 -11.82996 -11.64603 -11.52950 -11.52387 -11.33315 -11.25303 -11.05863 -10.96355 -10.85756 -10.77774 -10.60673 -10.57156 -10.44096 -10.30454 -9.95688 -9.49615 -8.95093 -8.76117 -8.49783 -8.39723 -7.58854 -6.00954 -4.03875 1.29982 1.37370 3.30514 3.38326 3.41156 3.50493 3.68744 3.98517 4.46745 4.56913 4.65176 4.82531 4.90975 4.96715 5.10792 5.17743 5.26639 5.28773 5.30842 5.33470 5.37755 5.44883 5.47626 5.59686 5.62907 5.66893 5.70439 5.74833 5.86482 5.90962 5.94497 6.02806 6.05929 6.06667 6.17417 6.22294 6.30819 6.35093 6.38747 6.42543 6.54257 6.62221 6.70879 6.78369 6.97958 6.99044 7.16386 7.51424 7.63099 7.96485 8.29131 8.51400 8.95822 9.17520 9.60280 11.07191 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.002874 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.638380 B = 9741.099192 C =10178.908360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.071 4.071 7 C -0.035 4.035 8 H 0.084 0.916 9 C -0.148 4.148 10 C -0.132 4.132 11 C 0.505 3.495 12 O -0.540 6.540 13 N -0.594 5.594 14 C 0.245 3.755 15 C -0.515 4.515 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.133 3.867 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.111 4.111 27 C -0.117 4.117 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.033 0.967 41 H 0.041 0.959 42 H 0.261 0.739 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.047 0.953 49 H 0.080 0.920 50 H 0.121 0.879 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 -22.002 1.409 23.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.071 4.071 7 C -0.054 4.054 8 H 0.103 0.897 9 C -0.205 4.205 10 C -0.172 4.172 11 C 0.292 3.708 12 O -0.418 6.418 13 N -0.326 5.326 14 C 0.126 3.874 15 C -0.554 4.554 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C 0.028 3.972 24 C -0.220 4.220 25 C -0.215 4.215 26 C -0.129 4.129 27 C -0.135 4.135 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.099 0.901 50 H 0.139 0.861 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.679 -21.635 1.764 23.025 hybrid contribution 0.530 0.377 -0.892 1.104 sum -7.149 -21.258 0.873 22.445 Atomic orbital electron populations 1.21750 0.94842 1.01495 1.02301 1.20514 0.96105 0.92892 1.02561 1.19838 1.00060 0.96172 0.93305 1.20967 1.00321 0.94917 0.97330 1.21098 0.99652 0.94750 0.97737 1.20009 0.97995 0.96052 0.93057 1.19886 0.94952 0.89217 1.01352 0.89739 1.21954 0.95424 1.04223 0.98869 1.21773 0.99923 0.93447 1.02106 1.20298 0.84109 0.86814 0.79554 1.90628 1.24418 1.83503 1.43247 1.48343 1.22823 1.09518 1.51894 1.19224 0.95247 0.74734 0.98189 1.21471 1.29129 0.96382 1.08428 0.92387 1.24933 0.96501 0.96374 0.96456 1.69942 1.45126 1.03941 1.34521 0.86510 0.80617 0.78202 0.82497 1.19845 1.21085 1.20999 1.20984 0.85033 0.98546 0.92604 1.22156 0.97115 1.02512 1.00206 1.22138 1.00187 1.04492 0.94649 1.21024 0.99383 0.94591 0.97908 1.20979 1.00280 0.94913 0.97330 0.92565 0.92522 0.92591 0.91257 0.91285 0.86453 0.86087 0.93441 0.89535 0.93276 0.89793 0.89592 0.94928 0.94120 0.92908 0.90748 0.91327 0.92350 0.92974 0.92799 0.93354 0.90091 0.86068 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.62 6.06 -27.88 -0.17 -0.79 16 3 C -0.09 -0.92 5.13 -104.62 -0.54 -1.45 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 5 C -0.11 -1.31 9.67 -39.58 -0.38 -1.69 16 6 C -0.07 -0.88 4.78 -104.62 -0.50 -1.38 16 7 C -0.04 -0.50 2.21 -91.78 -0.20 -0.71 16 8 H 0.08 1.30 7.69 -51.93 -0.40 0.90 16 9 C -0.15 -2.24 8.75 37.16 0.33 -1.92 16 10 C -0.13 -1.98 3.22 -27.88 -0.09 -2.07 16 11 C 0.51 10.26 7.39 -10.98 -0.08 10.18 16 12 O -0.54 -13.08 13.54 5.55 0.08 -13.01 16 13 N -0.59 -12.33 2.39 -167.47 -0.40 -12.73 16 14 C 0.25 6.28 4.59 -5.20 -0.02 6.26 16 15 C -0.52 -14.22 7.83 -34.44 -0.27 -14.49 16 16 H 0.06 1.61 7.63 -52.48 -0.40 1.21 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.13 2.17 3.17 -67.93 -0.22 1.95 16 24 C -0.16 -2.39 9.17 37.15 0.34 -2.05 16 25 C -0.16 -2.58 8.47 37.16 0.31 -2.27 16 26 C -0.11 -1.27 8.76 -39.58 -0.35 -1.62 16 27 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 28 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.27 7.95 -52.48 -0.42 0.85 16 35 H 0.05 0.66 7.41 -51.93 -0.38 0.27 16 36 H 0.09 1.62 5.95 -51.93 -0.31 1.31 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.12 7.79 -51.93 -0.40 0.72 16 39 H 0.09 1.17 7.20 -51.93 -0.37 0.80 16 40 H 0.03 0.85 6.43 -51.93 -0.33 0.52 16 41 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 43 H 0.07 1.02 5.77 -51.93 -0.30 0.72 16 44 H 0.07 1.16 6.66 -51.93 -0.35 0.81 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 50 H 0.12 1.30 7.16 -52.49 -0.38 0.92 16 51 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 401.76 15.07 6.05 6.05 Total: -1.00 -31.51 401.76 -9.88 -41.40 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.99 Total: 1.51 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -2.34 Total: -14.27 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.34 Total: -38.47 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.51 -9.88 -41.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609990468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.084 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds