Wall clock time and date at job start Tue Mar 31 2020 11:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46898 * 2 1 4 4 C 1.38237 * 119.99782 * 90.00238 * 3 2 1 5 5 C 1.38236 * 119.99996 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99833 * 359.95807 * 5 4 3 7 7 C 1.50695 * 119.99975 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47521 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47082 * 119.99828 * 7 6 5 10 10 C 1.52996 * 109.47310 * 239.99797 * 7 6 5 11 11 C 1.50702 * 109.47159 * 174.99934 * 10 7 6 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 7 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 7 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.50697 * 109.46949 * 90.00203 * 14 13 11 16 16 H 1.08004 * 120.00186 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00081 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00096 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47135 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47061 * 119.99902 * 19 17 15 22 22 H 1.48503 * 109.47075 * 240.00004 * 19 17 15 23 23 C 1.46506 * 120.00264 * 0.28128 * 13 11 10 24 24 C 1.52992 * 109.47288 * 119.99477 * 23 13 11 25 25 C 1.52998 * 109.46848 * 239.99814 * 23 13 11 26 26 C 1.38235 * 120.00003 * 0.27565 * 6 5 4 27 27 C 1.38234 * 120.00192 * 269.98000 * 3 2 1 28 28 H 1.09007 * 109.46775 * 299.99851 * 1 2 3 29 29 H 1.08997 * 109.47422 * 59.99591 * 1 2 3 30 30 H 1.09000 * 109.46931 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47149 * 240.00446 * 2 1 3 32 32 H 1.08996 * 109.47087 * 119.99712 * 2 1 3 33 33 H 1.08001 * 120.00191 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.00143 * 179.97438 * 5 4 3 35 35 H 1.09007 * 109.47141 * 60.00329 * 9 7 6 36 36 H 1.09005 * 109.47435 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.47522 * 300.00326 * 9 7 6 38 38 H 1.09004 * 109.47066 * 55.00137 * 10 7 6 39 39 H 1.08994 * 109.47405 * 294.99967 * 10 7 6 40 40 H 1.09001 * 109.47567 * 210.00057 * 14 13 11 41 41 H 1.09005 * 109.47076 * 330.00563 * 14 13 11 42 42 H 0.96991 * 119.99957 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.46745 * 359.97438 * 23 13 11 44 44 H 1.09005 * 109.47280 * 60.00263 * 24 23 13 45 45 H 1.09002 * 109.46985 * 180.02562 * 24 23 13 46 46 H 1.09000 * 109.47344 * 300.00445 * 24 23 13 47 47 H 1.09006 * 109.47195 * 59.99998 * 25 23 13 48 48 H 1.09002 * 109.46792 * 179.97438 * 25 23 13 49 49 H 1.08995 * 109.47040 * 299.99526 * 25 23 13 50 50 H 1.08001 * 120.00254 * 179.73149 * 26 6 5 51 51 H 1.08003 * 119.99880 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9556 4.0268 0.0001 7 6 3.4579 5.4476 0.0001 8 1 3.5783 5.7905 1.0277 9 6 4.8065 5.5118 -0.7197 10 6 2.4509 6.3446 -0.7226 11 6 2.8915 7.7818 -0.6163 12 8 3.9109 8.0612 -0.0215 13 7 2.1560 8.7562 -1.1874 14 6 2.5875 10.1527 -1.0892 15 6 3.4776 10.4868 -2.2584 16 1 3.6994 9.7342 -3.0007 17 6 4.0090 11.7532 -2.3807 18 7 3.7394 12.6695 -1.4766 19 14 5.1118 12.1675 -3.8304 20 1 5.2588 10.9715 -4.6983 21 1 4.5064 13.2755 -4.6120 22 1 6.4474 12.5847 -3.3330 23 6 0.9249 8.4188 -1.9063 24 6 -0.2607 9.1265 -1.2475 25 6 1.0443 8.8720 -3.3627 26 6 2.7206 3.3769 -1.1971 27 6 2.2631 2.0724 -1.1971 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0824 1.5635 2.1325 34 1 2.9036 3.8849 2.1326 35 1 4.6865 5.1689 -1.7475 36 1 5.1696 6.5396 -0.7201 37 1 5.5239 4.8728 -0.2049 38 1 1.4685 6.2309 -0.2641 39 1 2.3971 6.0578 -1.7728 40 1 1.7140 10.8046 -1.0998 41 1 3.1384 10.2983 -0.1600 42 1 4.1128 13.5605 -1.5628 43 1 0.7688 7.3404 -1.8733 44 1 -0.1044 10.2048 -1.2808 45 1 -1.1767 8.8751 -1.7821 46 1 -0.3457 8.8037 -0.2099 47 1 1.8891 8.3676 -3.8321 48 1 0.1285 8.6205 -3.8977 49 1 1.2006 9.9502 -3.3961 50 1 2.8974 3.8871 -2.1324 51 1 2.0838 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609990468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:20 Heat of formation + Delta-G solvation = -56.569152 kcal Electronic energy + Delta-G solvation = -27008.964840 eV Core-core repulsion = 23485.425192 eV Total energy + Delta-G solvation = -3523.539648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.17825 -40.26755 -37.74307 -36.54207 -34.92696 -33.84649 -32.39172 -31.75835 -30.46436 -29.32366 -28.20045 -27.88209 -25.36658 -24.60525 -23.64281 -22.84797 -22.26461 -20.89027 -19.35035 -18.59194 -18.34128 -17.02461 -16.87760 -16.61862 -16.17980 -15.95875 -15.87253 -15.06827 -14.83330 -14.77123 -14.62274 -14.47351 -14.25662 -14.09167 -13.96296 -13.82176 -13.74683 -13.33432 -13.21629 -13.07604 -12.84444 -12.72980 -12.63068 -12.53240 -12.32314 -12.26689 -12.16323 -12.11216 -11.98596 -11.78942 -11.60939 -11.54404 -11.49798 -11.39927 -10.60725 -10.40732 -9.74819 -9.37249 -9.33714 -8.18377 -6.29899 0.47712 0.57463 1.34941 1.37436 1.48594 1.90151 2.33011 2.47341 2.89854 3.11174 3.59963 3.79354 3.94453 3.98634 4.08185 4.12584 4.20022 4.22392 4.30857 4.40164 4.43549 4.50533 4.57668 4.64885 4.67578 4.69787 4.77477 4.84016 4.87228 4.88021 4.97850 5.04782 5.07972 5.12170 5.13937 5.14276 5.20791 5.22116 5.27246 5.31813 5.40632 5.44391 5.45414 5.58646 5.62851 5.66970 5.79849 5.83451 5.93489 6.13571 6.19262 6.76785 6.89356 7.33926 7.57225 8.88995 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.002874 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.638380 B = 9741.099192 C =10178.908360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.122 4.122 5 C -0.126 4.126 6 C -0.083 4.083 7 C -0.028 4.028 8 H 0.065 0.935 9 C -0.143 4.143 10 C -0.117 4.117 11 C 0.495 3.505 12 O -0.590 6.590 13 N -0.600 5.600 14 C 0.264 3.736 15 C -0.520 4.520 16 H 0.053 0.947 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.285 1.285 23 C 0.125 3.875 24 C -0.157 4.157 25 C -0.151 4.151 26 C -0.117 4.117 27 C -0.121 4.121 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.023 0.977 41 H -0.009 1.009 42 H 0.264 0.736 43 H 0.113 0.887 44 H 0.037 0.963 45 H 0.096 0.904 46 H 0.055 0.945 47 H 0.043 0.957 48 H 0.089 0.911 49 H 0.042 0.958 50 H 0.128 0.872 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.894 -25.186 -0.263 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.083 4.083 7 C -0.047 4.047 8 H 0.083 0.917 9 C -0.200 4.200 10 C -0.156 4.156 11 C 0.284 3.716 12 O -0.471 6.471 13 N -0.331 5.331 14 C 0.142 3.858 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.194 4.194 18 N -0.572 5.572 19 Si 0.785 3.215 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.211 1.211 23 C 0.023 3.977 24 C -0.215 4.215 25 C -0.209 4.209 26 C -0.135 4.135 27 C -0.138 4.138 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.041 0.959 41 H 0.009 0.991 42 H 0.073 0.927 43 H 0.131 0.869 44 H 0.057 0.943 45 H 0.115 0.885 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.108 0.892 49 H 0.062 0.938 50 H 0.146 0.854 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.365 -24.846 0.075 26.552 hybrid contribution 1.011 1.298 -0.321 1.676 sum -8.355 -23.548 -0.247 24.987 Atomic orbital electron populations 1.21737 0.94305 1.02300 1.01889 1.20570 0.96456 0.91451 1.03519 1.20177 0.98883 0.97241 0.92978 1.21202 0.99847 0.94436 0.98496 1.21222 1.00013 0.95519 0.97599 1.19767 0.99736 0.94789 0.94041 1.19732 0.94337 0.90728 0.99910 0.91680 1.21862 0.96322 1.01691 1.00102 1.21743 1.00991 0.89048 1.03833 1.21324 0.83230 0.88818 0.78224 1.90608 1.26680 1.84606 1.45215 1.48398 1.24525 1.07632 1.52550 1.18625 0.93983 0.77912 0.95240 1.21671 1.29232 0.96353 1.08581 0.92834 1.25811 0.97993 0.96374 0.99244 1.70063 1.46355 1.04383 1.36408 0.85470 0.78356 0.78382 0.79243 1.19046 1.19673 1.21132 1.21393 0.83345 1.00983 0.92028 1.22121 0.98040 1.00323 1.00975 1.22076 1.01870 1.01795 0.95189 1.21134 0.99469 0.95230 0.97620 1.21240 0.99670 0.94508 0.98424 0.93053 0.92855 0.91241 0.90272 0.90440 0.84733 0.86005 0.92005 0.93628 0.92530 0.87323 0.87354 0.95899 0.99128 0.92708 0.86874 0.94347 0.88522 0.92617 0.93751 0.89244 0.93833 0.85425 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 71.98 0.71 -0.82 16 2 C -0.08 -0.96 6.06 29.85 0.18 -0.77 16 3 C -0.09 -1.54 5.13 -19.86 -0.10 -1.64 16 4 C -0.12 -2.20 9.70 22.27 0.22 -1.99 16 5 C -0.13 -2.70 9.67 22.27 0.22 -2.48 16 6 C -0.08 -1.93 4.78 -19.87 -0.09 -2.02 16 7 C -0.03 -0.80 2.21 -11.54 -0.03 -0.82 16 8 H 0.06 2.08 7.69 -2.39 -0.02 2.06 16 9 C -0.14 -4.39 8.75 71.98 0.63 -3.76 16 10 C -0.12 -3.33 3.22 29.85 0.10 -3.23 16 11 C 0.49 20.56 7.39 87.66 0.65 21.21 16 12 O -0.59 -30.34 13.54 -3.04 -0.04 -30.38 16 13 N -0.60 -25.44 2.39 -802.14 -1.91 -27.35 16 14 C 0.26 14.29 4.59 85.63 0.39 14.68 16 15 C -0.52 -29.77 7.83 25.60 0.20 -29.57 16 16 H 0.05 3.05 7.63 -2.91 -0.02 3.02 16 17 C 0.00 0.23 5.46 84.66 0.46 0.69 16 18 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 19 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 C 0.13 3.88 3.17 44.99 0.14 4.02 16 24 C -0.16 -4.39 9.17 71.98 0.66 -3.73 16 25 C -0.15 -4.76 8.47 71.98 0.61 -4.15 16 26 C -0.12 -2.35 8.76 22.27 0.20 -2.16 16 27 C -0.12 -2.09 9.70 22.27 0.22 -1.87 16 28 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 33 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.12 2.50 7.95 -2.91 -0.02 2.47 16 35 H 0.06 1.67 7.41 -2.38 -0.02 1.65 16 36 H 0.04 1.79 5.95 -2.38 -0.01 1.77 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.11 2.60 7.79 -2.38 -0.02 2.59 16 39 H 0.11 2.65 7.20 -2.39 -0.02 2.63 16 40 H 0.02 1.27 6.43 -2.39 -0.02 1.26 16 41 H -0.01 -0.60 7.42 -2.38 -0.02 -0.61 16 42 H 0.26 15.22 8.31 -92.72 -0.77 14.45 16 43 H 0.11 2.67 5.77 -2.38 -0.01 2.66 16 44 H 0.04 1.30 6.66 -2.38 -0.02 1.28 16 45 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 48 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.04 1.69 6.92 -2.39 -0.02 1.68 16 50 H 0.13 2.35 7.16 -2.91 -0.02 2.33 16 51 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -73.23 401.76 6.59 -66.64 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.88 Total: 18.71 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 5.36 Total: -18.42 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.63 Total: -84.18 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.04 Total: -30.38 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.23 6.59 -66.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609990468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.075 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds