Wall clock time and date at job start Tue Mar 31 2020 11:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 11 11 C 1.50704 * 109.46855 * 185.00302 * 10 7 6 12 12 O 1.21277 * 120.00348 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47466 * 90.00095 * 14 13 11 16 16 H 1.08009 * 119.99452 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00539 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99553 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00262 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46734 * 90.00197 * 19 17 15 21 21 H 1.48497 * 109.47369 * 209.99928 * 19 17 15 22 22 H 1.48499 * 109.47154 * 330.00132 * 19 17 15 23 23 C 1.46500 * 120.00223 * 359.97438 * 13 11 10 24 24 C 1.52995 * 109.47480 * 120.00180 * 23 13 11 25 25 C 1.53000 * 109.46982 * 240.00137 * 23 13 11 26 26 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 27 27 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 33 33 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 35 35 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 36 36 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 37 37 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 38 38 H 1.08999 * 109.46955 * 304.99332 * 10 7 6 39 39 H 1.08993 * 109.47689 * 64.99776 * 10 7 6 40 40 H 1.09013 * 109.46871 * 209.99609 * 14 13 11 41 41 H 1.08997 * 109.47349 * 329.99257 * 14 13 11 42 42 H 0.97005 * 119.99801 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.46831 * 0.02562 * 23 13 11 44 44 H 1.09003 * 109.47312 * 59.99406 * 24 23 13 45 45 H 1.08996 * 109.47411 * 180.02562 * 24 23 13 46 46 H 1.09004 * 109.46711 * 300.00309 * 24 23 13 47 47 H 1.09005 * 109.47092 * 59.99823 * 25 23 13 48 48 H 1.09007 * 109.47070 * 179.97438 * 25 23 13 49 49 H 1.08998 * 109.47299 * 299.99667 * 25 23 13 50 50 H 1.08002 * 120.00166 * 179.97438 * 26 6 5 51 51 H 1.07996 * 120.00605 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.8036 5.5137 -0.7205 11 6 5.3631 6.9090 -0.6140 12 8 4.7442 7.7669 -0.0208 13 7 6.5512 7.2035 -1.1781 14 6 7.0947 8.5600 -1.0750 15 6 7.9420 8.6688 0.1664 16 1 8.0632 7.8131 0.8142 17 6 8.5626 9.8606 0.4753 18 7 8.4154 10.9025 -0.3137 19 14 9.6123 9.9956 2.0146 20 1 11.0158 9.6354 1.6896 21 1 9.5646 11.3890 2.5257 22 1 9.0911 9.0697 3.0520 23 6 7.2991 6.1671 -1.8942 24 6 7.4999 6.5962 -3.3489 25 6 8.6621 5.9696 -1.2279 26 6 2.7234 3.3758 1.1971 27 6 2.2627 2.0725 1.1971 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0926 1.5598 -2.1325 34 1 2.9045 3.8845 -2.1325 35 1 2.3273 6.0019 -1.7499 36 1 1.4869 6.2984 -0.2090 37 1 2.8103 7.3727 -0.7227 38 1 5.4959 4.8087 -0.2603 39 1 4.6673 5.2560 -1.7707 40 1 7.7058 8.7741 -1.9520 41 1 6.2752 9.2766 -1.0196 42 1 8.8517 11.7411 -0.0962 43 1 6.7411 5.2312 -1.8655 44 1 8.0576 7.5324 -3.3779 45 1 8.0560 5.8250 -3.8818 46 1 6.5288 6.7370 -3.8235 47 1 8.5190 5.6638 -0.1914 48 1 9.2184 5.1981 -1.7604 49 1 9.2198 6.9056 -1.2569 50 1 2.9031 3.8851 2.1324 51 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609990473.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:24 Heat of formation + Delta-G solvation = -41.410450 kcal Electronic energy + Delta-G solvation = -26947.565007 eV Core-core repulsion = 23424.682689 eV Total energy + Delta-G solvation = -3522.882317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.96791 -39.05702 -36.32138 -35.39830 -33.12211 -32.70099 -30.96940 -30.79676 -29.12076 -28.17529 -26.77835 -26.36404 -24.38260 -22.88931 -22.83091 -21.66529 -21.10566 -19.89942 -17.82826 -16.98667 -16.43251 -15.97207 -15.75475 -15.10660 -14.98775 -14.76786 -14.31512 -13.96346 -13.88760 -13.65998 -13.51460 -13.37384 -13.17067 -13.07550 -12.68191 -12.51151 -12.27833 -12.11205 -11.82193 -11.64054 -11.55297 -11.50007 -11.37678 -11.18352 -11.05662 -10.95081 -10.92752 -10.78963 -10.60495 -10.57258 -10.42868 -10.30362 -9.97237 -9.49538 -8.94930 -8.77090 -8.49673 -8.39155 -7.58607 -6.00617 -4.03551 1.30130 1.37558 3.31070 3.38112 3.41452 3.50804 3.69041 3.98330 4.47114 4.56957 4.65191 4.82257 4.90342 4.96788 5.10846 5.16573 5.26608 5.28695 5.31435 5.33826 5.36946 5.44459 5.47798 5.59637 5.62606 5.65917 5.70394 5.74785 5.82311 5.90209 5.93929 6.02592 6.05318 6.06494 6.16073 6.21435 6.30711 6.34385 6.38992 6.41401 6.54401 6.62059 6.66807 6.75501 6.98286 6.99082 7.16408 7.51356 7.63037 7.96723 8.29417 8.51484 8.95831 9.17602 9.60535 11.07458 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.002817 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.040546 B = 9937.168599 C =10259.482066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.071 4.071 7 C -0.036 4.036 8 H 0.086 0.914 9 C -0.146 4.146 10 C -0.132 4.132 11 C 0.505 3.495 12 O -0.540 6.540 13 N -0.594 5.594 14 C 0.246 3.754 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.133 3.867 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.113 4.113 27 C -0.117 4.117 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.033 0.967 41 H 0.041 0.959 42 H 0.262 0.738 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.080 0.920 50 H 0.122 0.878 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 -20.522 -3.686 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.135 4.135 5 C -0.130 4.130 6 C -0.071 4.071 7 C -0.055 4.055 8 H 0.104 0.896 9 C -0.203 4.203 10 C -0.172 4.172 11 C 0.292 3.708 12 O -0.418 6.418 13 N -0.326 5.326 14 C 0.127 3.873 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C 0.028 3.972 24 C -0.220 4.220 25 C -0.215 4.215 26 C -0.132 4.132 27 C -0.135 4.135 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.099 0.901 50 H 0.140 0.860 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.239 -19.851 -3.403 23.064 hybrid contribution 0.792 0.101 0.837 1.157 sum -10.447 -19.750 -2.566 22.490 Atomic orbital electron populations 1.21747 0.94893 1.01484 1.02252 1.20517 0.96061 0.92901 1.02607 1.19836 1.00047 0.96174 0.93306 1.20970 1.00331 0.94932 0.97309 1.21004 0.99592 0.94533 0.97831 1.20003 0.98163 0.95882 0.93064 1.19897 0.93692 0.90387 1.01538 0.89606 1.21943 0.97901 1.01683 0.98809 1.21770 0.97150 0.96420 1.01890 1.20297 0.81467 0.89579 0.79427 1.90626 1.59210 1.49657 1.42289 1.48343 1.18804 1.13039 1.52404 1.19216 0.94420 0.76815 0.96879 1.21438 1.28845 0.96968 1.08263 0.92461 1.24928 0.96890 0.95602 0.96823 1.69937 1.44078 1.01884 1.37637 0.86559 0.80393 0.77353 0.83496 1.20742 1.21197 1.19963 1.20983 0.93709 0.90806 0.91668 1.22158 1.01716 1.02427 0.95682 1.22140 0.96552 1.02760 1.00045 1.21112 0.99554 0.94680 0.97805 1.20975 1.00256 0.94914 0.97355 0.92586 0.92575 0.92585 0.91246 0.91233 0.86443 0.86124 0.93500 0.93222 0.89758 0.89628 0.89750 0.94927 0.94122 0.92857 0.90741 0.91326 0.92349 0.92973 0.92797 0.93344 0.90090 0.86040 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.62 6.07 -27.88 -0.17 -0.79 16 3 C -0.09 -0.92 5.13 -104.62 -0.54 -1.46 16 4 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 5 C -0.11 -1.25 8.76 -39.58 -0.35 -1.60 16 6 C -0.07 -0.88 4.78 -104.62 -0.50 -1.38 16 7 C -0.04 -0.52 2.21 -91.77 -0.20 -0.72 16 8 H 0.09 1.37 7.69 -51.93 -0.40 0.97 16 9 C -0.15 -2.11 8.75 37.16 0.33 -1.79 16 10 C -0.13 -1.98 3.23 -27.88 -0.09 -2.07 16 11 C 0.51 10.27 7.39 -10.98 -0.08 10.19 16 12 O -0.54 -13.10 13.54 5.56 0.08 -13.03 16 13 N -0.59 -12.35 2.39 -167.47 -0.40 -12.75 16 14 C 0.25 6.31 4.59 -5.19 -0.02 6.28 16 15 C -0.52 -14.32 7.83 -34.44 -0.27 -14.59 16 16 H 0.06 1.60 7.63 -52.48 -0.40 1.20 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 19 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.13 2.17 3.17 -67.93 -0.22 1.95 16 24 C -0.16 -2.38 9.17 37.16 0.34 -2.03 16 25 C -0.16 -2.61 8.47 37.16 0.31 -2.30 16 26 C -0.11 -1.33 9.67 -39.58 -0.38 -1.72 16 27 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.12 1.23 7.16 -52.49 -0.38 0.85 16 35 H 0.05 0.60 7.39 -51.93 -0.38 0.21 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.47 5.95 -51.93 -0.31 1.17 16 38 H 0.09 1.21 7.79 -51.93 -0.40 0.80 16 39 H 0.08 1.09 7.22 -51.93 -0.37 0.71 16 40 H 0.03 0.85 6.43 -51.92 -0.33 0.52 16 41 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.07 1.02 5.77 -51.93 -0.30 0.72 16 44 H 0.07 1.15 6.66 -51.93 -0.35 0.81 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 50 H 0.12 1.34 7.95 -52.49 -0.42 0.92 16 51 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 401.76 15.07 6.05 6.05 Total: -1.00 -31.63 401.76 -9.88 -41.51 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.99 Total: 1.35 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.34 Total: -14.23 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.34 Total: -38.52 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.63 -9.88 -41.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609990473.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.099 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds