Wall clock time and date at job start Tue Mar 31 2020 11:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38291 * 119.94308 * 2 1 4 4 C 1.38123 * 120.05020 * 179.74838 * 3 2 1 5 5 C 1.38751 * 119.94830 * 0.50427 * 4 3 2 6 6 O 1.35898 * 120.05971 * 179.74443 * 5 4 3 7 7 C 1.42904 * 116.99561 * 359.73129 * 6 5 4 8 8 C 1.53003 * 109.46760 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.46854 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.46976 * 179.97438 * 9 8 7 11 11 C 1.36936 * 120.00267 * 269.99864 * 10 9 8 12 12 H 1.07993 * 120.00440 * 141.59966 * 11 10 9 13 13 C 1.38812 * 119.99834 * 321.59987 * 11 10 9 14 14 N 1.31619 * 120.00247 * 339.26534 * 13 11 10 15 15 Si 1.86804 * 120.00120 * 159.26316 * 13 11 10 16 16 H 1.48492 * 109.47036 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47079 * 120.00198 * 15 13 11 18 18 H 1.48500 * 109.46957 * 240.00175 * 15 13 11 19 19 C 1.46503 * 120.00137 * 89.99907 * 10 9 8 20 20 C 1.54268 * 110.03198 * 242.54986 * 19 10 9 21 21 C 1.54969 * 104.15905 * 217.13495 * 20 19 10 22 22 C 1.54888 * 102.77420 * 37.88778 * 21 20 19 23 23 C 1.53873 * 110.03241 * 125.32932 * 19 10 9 24 24 C 1.38715 * 119.88698 * 359.47866 * 5 4 3 25 25 C 1.38174 * 119.94205 * 0.26576 * 24 5 4 26 26 C 1.50696 * 119.97022 * 180.02562 * 25 24 5 27 27 H 1.09007 * 109.47012 * 270.02206 * 1 2 3 28 28 H 1.08996 * 109.47206 * 30.01752 * 1 2 3 29 29 H 1.08994 * 109.47566 * 150.02167 * 1 2 3 30 30 H 1.07995 * 119.97066 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.02538 * 180.28417 * 4 3 2 32 32 H 1.08997 * 109.47129 * 59.99769 * 7 6 5 33 33 H 1.09000 * 109.46973 * 299.99644 * 7 6 5 34 34 H 1.08995 * 109.47106 * 60.00112 * 8 7 6 35 35 H 1.09000 * 109.46990 * 299.99515 * 8 7 6 36 36 H 1.08997 * 109.47178 * 59.99562 * 9 8 7 37 37 H 1.09000 * 109.46829 * 299.99495 * 9 8 7 38 38 H 0.97003 * 120.00565 * 175.02978 * 14 13 11 39 39 H 1.09006 * 110.01510 * 3.94094 * 19 10 9 40 40 H 1.08996 * 110.48485 * 335.77996 * 20 19 10 41 41 H 1.08997 * 110.48720 * 98.42404 * 20 19 10 42 42 H 1.08996 * 110.71765 * 279.57733 * 21 20 19 43 43 H 1.08998 * 110.92233 * 156.29192 * 21 20 19 44 44 H 1.09008 * 110.48728 * 203.40565 * 22 21 20 45 45 H 1.08997 * 110.60540 * 80.82018 * 22 21 20 46 46 H 1.09001 * 110.03409 * 238.57218 * 23 19 10 47 47 H 1.08999 * 110.03098 * 0.02562 * 23 19 10 48 48 H 1.08000 * 120.02832 * 180.29465 * 24 5 4 49 49 H 1.09009 * 109.46716 * 90.00292 * 26 25 24 50 50 H 1.09002 * 109.47555 * 210.00437 * 26 25 24 51 51 H 1.09000 * 109.47220 * 330.00630 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2009 0.0053 5 6 4.2735 0.0000 -0.0001 6 8 5.6325 -0.0001 -0.0002 7 6 6.2812 1.2732 -0.0006 8 6 7.7980 1.0727 -0.0013 9 6 8.4926 2.4360 -0.0011 10 7 9.9450 2.2440 -0.0012 11 6 10.6238 2.1542 1.1847 12 1 11.4446 1.4597 1.2858 13 6 10.2569 2.9558 2.2569 14 7 9.5667 4.0571 2.0494 15 14 10.7426 2.4715 3.9945 16 1 11.5094 1.2003 3.9579 17 1 11.5849 3.5402 4.5890 18 1 9.5201 2.2892 4.8176 19 6 10.6712 2.1482 -1.2699 20 6 11.3382 0.7626 -1.3937 21 6 12.6912 1.0542 -2.0907 22 6 13.1221 2.3985 -1.4534 23 6 11.8047 3.1880 -1.3083 24 6 3.5787 -1.2006 0.0003 25 6 2.1970 -1.1979 0.0004 26 6 1.4416 -2.5019 0.0014 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6559 2.1328 0.0004 31 1 4.1172 2.1370 0.0099 32 1 5.9883 1.8305 0.8892 33 1 5.9883 1.8299 -0.8908 34 1 8.0904 0.5156 -0.8913 35 1 8.0913 0.5159 0.8887 36 1 8.2001 2.9927 0.8891 37 1 8.1994 2.9932 -0.8909 38 1 9.2483 4.5792 2.8024 39 1 9.9881 2.3095 -2.1039 40 1 11.5031 0.3292 -0.4073 41 1 10.7279 0.0988 -2.0060 42 1 12.5551 1.1629 -3.1667 43 1 13.4183 0.2723 -1.8717 44 1 13.8135 2.9275 -2.1095 45 1 13.5765 2.2318 -0.4768 46 1 11.6723 3.8535 -2.1613 47 1 11.8148 3.7636 -0.3828 48 1 4.1174 -2.1367 0.0010 49 1 1.2595 -2.8154 1.0294 50 1 0.4893 -2.3706 -0.5125 51 1 2.0296 -3.2628 -0.5118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610003238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:24 Heat of formation + Delta-G solvation = -21.629223 kcal Electronic energy + Delta-G solvation = -26457.371787 eV Core-core repulsion = 22935.347248 eV Total energy + Delta-G solvation = -3522.024539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.10734 -38.01499 -37.65323 -34.76254 -32.78632 -32.33826 -31.54523 -30.40020 -27.81848 -27.71743 -26.60813 -26.01439 -25.27030 -22.93999 -22.09284 -20.66033 -20.21073 -19.86583 -19.02351 -17.59157 -16.32221 -16.04738 -15.83824 -15.33641 -15.20815 -14.76585 -14.38153 -14.22079 -14.20593 -13.68818 -13.30530 -13.25556 -13.03490 -12.93617 -12.74033 -12.51976 -12.27655 -12.08645 -12.04016 -11.54331 -11.32008 -11.25918 -11.03815 -10.91728 -10.74424 -10.59963 -10.46347 -10.38722 -10.31936 -10.22584 -10.15353 -10.08518 -9.65563 -9.57588 -9.45966 -8.77763 -8.45345 -7.91608 -6.57731 -5.75820 -3.39656 1.33845 1.47733 3.34655 3.44849 3.46719 3.48551 3.74548 4.48798 4.73150 4.78563 4.98787 5.05327 5.14976 5.25375 5.33241 5.33911 5.37067 5.44485 5.45724 5.50014 5.52052 5.56430 5.65990 5.69566 5.71321 5.75640 5.92225 6.00709 6.09222 6.17646 6.26436 6.28770 6.34470 6.35627 6.41877 6.46645 6.50977 6.58554 6.62501 6.63753 6.69051 6.72228 6.87129 6.90185 7.04738 7.11564 7.21446 7.41367 7.62431 7.68794 7.84627 8.53282 9.19964 9.82100 10.40548 11.19987 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.002788 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.627862 B =10040.990774 C =11016.477855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C -0.076 4.076 4 C -0.212 4.212 5 C 0.139 3.861 6 O -0.316 6.316 7 C 0.063 3.937 8 C -0.132 4.132 9 C 0.152 3.848 10 N -0.576 5.576 11 C -0.245 4.245 12 H 0.061 0.939 13 C 0.012 3.988 14 N -0.886 5.886 15 Si 0.889 3.111 16 H -0.276 1.276 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.170 3.830 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.157 4.157 25 C -0.051 4.051 26 C -0.116 4.116 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.086 0.914 48 H 0.128 0.872 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.736 -7.246 -6.415 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C -0.094 4.094 4 C -0.230 4.230 5 C 0.093 3.907 6 O -0.229 6.229 7 C -0.012 4.012 8 C -0.173 4.173 9 C 0.025 3.975 10 N -0.294 5.294 11 C -0.375 4.375 12 H 0.079 0.921 13 C -0.188 4.188 14 N -0.528 5.528 15 Si 0.718 3.282 16 H -0.201 1.201 17 H -0.217 1.217 18 H -0.215 1.215 19 C 0.063 3.937 20 C -0.175 4.175 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.170 4.170 24 C -0.176 4.176 25 C -0.052 4.052 26 C -0.172 4.172 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.104 0.896 48 H 0.146 0.854 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.585 -7.214 -6.303 15.816 hybrid contribution 0.209 0.106 0.986 1.013 sum -12.376 -7.108 -5.317 15.230 Atomic orbital electron populations 1.20746 0.91481 1.02381 1.01899 1.19586 0.95855 0.92558 1.05773 1.20787 0.93341 0.97423 0.97879 1.21329 0.95270 0.97559 1.08877 1.19091 0.83264 0.93845 0.94533 1.86127 1.15426 1.33664 1.87667 1.23007 0.94700 0.82764 1.00712 1.22349 0.89264 1.03217 1.02431 1.20774 0.83710 0.91446 1.01610 1.43875 1.00887 1.83925 1.00744 1.18942 1.15135 1.14677 0.88753 0.92120 1.25144 1.00549 0.94046 0.99064 1.70073 1.40160 1.12722 1.29875 0.86455 0.78004 0.78181 0.85549 1.20077 1.21724 1.21525 1.21064 0.92260 0.91841 0.88544 1.22862 0.95087 0.99256 1.00294 1.22439 0.97618 0.97252 0.98779 1.22255 0.97707 0.95788 0.99783 1.22535 0.94271 0.98454 1.01725 1.20277 0.93006 0.96476 1.07843 1.19479 0.92565 0.94956 0.98151 1.20854 0.99964 0.93993 1.02409 0.91693 0.92009 0.91527 0.86045 0.85238 0.92155 0.92704 0.92797 0.91225 0.88800 0.95748 0.93797 0.93537 0.90834 0.93543 0.92736 0.92957 0.93472 0.92007 0.94154 0.89579 0.85438 0.91050 0.91094 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.60 36.01 0.35 -0.55 16 2 C -0.14 -1.58 5.88 -104.60 -0.62 -2.19 16 3 C -0.08 -0.94 9.69 -39.60 -0.38 -1.32 16 4 C -0.21 -3.00 9.04 -39.43 -0.36 -3.36 16 5 C 0.14 2.17 6.69 -39.22 -0.26 1.91 16 6 O -0.32 -5.51 10.14 -19.42 -0.20 -5.71 16 7 C 0.06 1.08 4.74 37.16 0.18 1.26 16 8 C -0.13 -2.59 5.91 -26.73 -0.16 -2.75 16 9 C 0.15 3.35 5.28 -4.04 -0.02 3.33 16 10 N -0.58 -13.49 2.38 -164.39 -0.39 -13.88 16 11 C -0.25 -6.32 7.75 -15.06 -0.12 -6.44 16 12 H 0.06 1.60 6.94 -52.49 -0.36 1.24 16 13 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 14 N -0.89 -24.42 11.48 55.49 0.64 -23.79 16 15 Si 0.89 21.16 29.61 -169.99 -5.03 16.12 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 C 0.17 3.49 3.42 -66.81 -0.23 3.26 16 20 C -0.14 -2.51 6.43 -25.03 -0.16 -2.67 16 21 C -0.12 -1.97 6.91 -24.70 -0.17 -2.14 16 22 C -0.12 -2.03 6.83 -25.07 -0.17 -2.20 16 23 C -0.13 -2.61 6.25 -25.61 -0.16 -2.77 16 24 C -0.16 -2.18 9.64 -39.43 -0.38 -2.56 16 25 C -0.05 -0.61 5.88 -104.65 -0.62 -1.22 16 26 C -0.12 -0.99 9.60 36.00 0.35 -0.64 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.07 0.47 5.94 -51.93 -0.31 0.16 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.75 6.30 -52.49 -0.33 1.42 16 32 H 0.06 1.03 7.65 -51.93 -0.40 0.63 16 33 H 0.05 0.86 7.67 -51.93 -0.40 0.46 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.09 2.35 5.55 -51.93 -0.29 2.06 16 37 H 0.02 0.51 7.91 -51.93 -0.41 0.10 16 38 H 0.25 6.76 8.32 -40.82 -0.34 6.42 16 39 H 0.05 0.92 7.81 -51.93 -0.41 0.51 16 40 H 0.07 1.51 6.64 -51.93 -0.34 1.17 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 2.04 7.16 -51.93 -0.37 1.67 16 48 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 49 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 50 H 0.07 0.50 5.94 -51.93 -0.31 0.19 16 51 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -27.84 396.96 -11.00 -38.84 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.98 Total: 3.24 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -3.02 Total: -20.82 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.25 Total: -37.66 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.20 Total: -5.71 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -27.84 -11.00 -38.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610003238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.207 kcal (2) G-P(sol) polarization free energy of solvation -27.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds