Wall clock time and date at job start Tue Mar 31 2020 11:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38291 * 119.94308 * 2 1 4 4 C 1.38123 * 120.05020 * 179.74838 * 3 2 1 5 5 C 1.38751 * 119.94830 * 0.50427 * 4 3 2 6 6 O 1.35898 * 120.05971 * 179.74443 * 5 4 3 7 7 C 1.42904 * 116.99561 * 359.73129 * 6 5 4 8 8 C 1.53003 * 109.46760 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.46854 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.46976 * 179.97438 * 9 8 7 11 11 C 1.36936 * 120.00267 * 269.99864 * 10 9 8 12 12 H 1.07993 * 120.00440 * 141.59966 * 11 10 9 13 13 C 1.38812 * 119.99834 * 321.59987 * 11 10 9 14 14 N 1.31619 * 120.00247 * 339.26534 * 13 11 10 15 15 Si 1.86804 * 120.00120 * 159.26316 * 13 11 10 16 16 H 1.48492 * 109.47036 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47079 * 120.00198 * 15 13 11 18 18 H 1.48500 * 109.46957 * 240.00175 * 15 13 11 19 19 C 1.46503 * 120.00137 * 89.99907 * 10 9 8 20 20 C 1.54268 * 110.03198 * 242.54986 * 19 10 9 21 21 C 1.54969 * 104.15905 * 217.13495 * 20 19 10 22 22 C 1.54888 * 102.77420 * 37.88778 * 21 20 19 23 23 C 1.53873 * 110.03241 * 125.32932 * 19 10 9 24 24 C 1.38715 * 119.88698 * 359.47866 * 5 4 3 25 25 C 1.38174 * 119.94205 * 0.26576 * 24 5 4 26 26 C 1.50696 * 119.97022 * 180.02562 * 25 24 5 27 27 H 1.09007 * 109.47012 * 270.02206 * 1 2 3 28 28 H 1.08996 * 109.47206 * 30.01752 * 1 2 3 29 29 H 1.08994 * 109.47566 * 150.02167 * 1 2 3 30 30 H 1.07995 * 119.97066 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.02538 * 180.28417 * 4 3 2 32 32 H 1.08997 * 109.47129 * 59.99769 * 7 6 5 33 33 H 1.09000 * 109.46973 * 299.99644 * 7 6 5 34 34 H 1.08995 * 109.47106 * 60.00112 * 8 7 6 35 35 H 1.09000 * 109.46990 * 299.99515 * 8 7 6 36 36 H 1.08997 * 109.47178 * 59.99562 * 9 8 7 37 37 H 1.09000 * 109.46829 * 299.99495 * 9 8 7 38 38 H 0.97003 * 120.00565 * 175.02978 * 14 13 11 39 39 H 1.09006 * 110.01510 * 3.94094 * 19 10 9 40 40 H 1.08996 * 110.48485 * 335.77996 * 20 19 10 41 41 H 1.08997 * 110.48720 * 98.42404 * 20 19 10 42 42 H 1.08996 * 110.71765 * 279.57733 * 21 20 19 43 43 H 1.08998 * 110.92233 * 156.29192 * 21 20 19 44 44 H 1.09008 * 110.48728 * 203.40565 * 22 21 20 45 45 H 1.08997 * 110.60540 * 80.82018 * 22 21 20 46 46 H 1.09001 * 110.03409 * 238.57218 * 23 19 10 47 47 H 1.08999 * 110.03098 * 0.02562 * 23 19 10 48 48 H 1.08000 * 120.02832 * 180.29465 * 24 5 4 49 49 H 1.09009 * 109.46716 * 90.00292 * 26 25 24 50 50 H 1.09002 * 109.47555 * 210.00437 * 26 25 24 51 51 H 1.09000 * 109.47220 * 330.00630 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2009 0.0053 5 6 4.2735 0.0000 -0.0001 6 8 5.6325 -0.0001 -0.0002 7 6 6.2812 1.2732 -0.0006 8 6 7.7980 1.0727 -0.0013 9 6 8.4926 2.4360 -0.0011 10 7 9.9450 2.2440 -0.0012 11 6 10.6238 2.1542 1.1847 12 1 11.4446 1.4597 1.2858 13 6 10.2569 2.9558 2.2569 14 7 9.5667 4.0571 2.0494 15 14 10.7426 2.4715 3.9945 16 1 11.5094 1.2003 3.9579 17 1 11.5849 3.5402 4.5890 18 1 9.5201 2.2892 4.8176 19 6 10.6712 2.1482 -1.2699 20 6 11.3382 0.7626 -1.3937 21 6 12.6912 1.0542 -2.0907 22 6 13.1221 2.3985 -1.4534 23 6 11.8047 3.1880 -1.3083 24 6 3.5787 -1.2006 0.0003 25 6 2.1970 -1.1979 0.0004 26 6 1.4416 -2.5019 0.0014 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6559 2.1328 0.0004 31 1 4.1172 2.1370 0.0099 32 1 5.9883 1.8305 0.8892 33 1 5.9883 1.8299 -0.8908 34 1 8.0904 0.5156 -0.8913 35 1 8.0913 0.5159 0.8887 36 1 8.2001 2.9927 0.8891 37 1 8.1994 2.9932 -0.8909 38 1 9.2483 4.5792 2.8024 39 1 9.9881 2.3095 -2.1039 40 1 11.5031 0.3292 -0.4073 41 1 10.7279 0.0988 -2.0060 42 1 12.5551 1.1629 -3.1667 43 1 13.4183 0.2723 -1.8717 44 1 13.8135 2.9275 -2.1095 45 1 13.5765 2.2318 -0.4768 46 1 11.6723 3.8535 -2.1613 47 1 11.8148 3.7636 -0.3828 48 1 4.1174 -2.1367 0.0010 49 1 1.2595 -2.8154 1.0294 50 1 0.4893 -2.3706 -0.5125 51 1 2.0296 -3.2628 -0.5118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610003238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:22 Heat of formation + Delta-G solvation = -32.515687 kcal Electronic energy + Delta-G solvation = -26457.843860 eV Core-core repulsion = 22935.347248 eV Total energy + Delta-G solvation = -3522.496612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.19898 -39.46043 -38.95462 -36.43258 -34.08087 -33.50580 -32.88131 -31.97312 -29.31601 -28.70774 -28.17400 -27.17481 -26.67483 -24.51473 -23.17442 -22.19556 -21.39364 -21.25988 -20.73897 -18.80253 -18.05866 -17.33181 -17.17845 -16.89395 -16.47840 -16.21138 -15.99132 -15.34030 -15.18467 -14.94781 -14.78379 -14.47035 -14.33529 -14.14154 -14.02548 -13.62781 -13.55441 -13.29370 -13.08436 -12.89887 -12.77618 -12.72702 -12.43766 -12.36628 -12.21703 -12.05177 -12.03410 -11.80902 -11.76223 -11.71730 -11.62760 -11.57774 -11.29192 -11.22619 -11.14745 -10.45798 -9.75500 -8.96967 -8.52773 -7.75243 -5.42730 0.34736 0.45678 1.41567 1.46829 1.54706 2.20849 2.52859 2.74509 3.27305 3.60880 3.84060 3.89433 3.99039 3.99974 4.04485 4.07783 4.12376 4.27094 4.33131 4.36397 4.40306 4.48826 4.63175 4.70567 4.75006 4.76279 4.78210 4.83169 4.85450 4.94929 4.96179 4.98105 4.99445 5.02670 5.03475 5.21597 5.22300 5.23883 5.25040 5.34400 5.39513 5.43048 5.45797 5.59490 5.63014 5.68845 5.72141 5.73559 5.85592 5.93120 6.47738 6.52780 7.22203 7.91789 8.43871 9.15971 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.002788 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.627862 B =10040.990774 C =11016.477855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.136 4.136 3 C -0.083 4.083 4 C -0.226 4.226 5 C 0.105 3.895 6 O -0.334 6.334 7 C 0.076 3.924 8 C -0.115 4.115 9 C 0.155 3.845 10 N -0.590 5.590 11 C -0.238 4.238 12 H 0.052 0.948 13 C -0.033 4.033 14 N -0.913 5.913 15 Si 0.940 3.060 16 H -0.271 1.271 17 H -0.293 1.293 18 H -0.292 1.292 19 C 0.160 3.840 20 C -0.130 4.130 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.128 4.128 24 C -0.171 4.171 25 C -0.055 4.055 26 C -0.115 4.115 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.128 0.872 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.248 0.752 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.045 0.955 46 H 0.055 0.945 47 H 0.040 0.960 48 H 0.130 0.870 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 -8.542 -7.878 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C -0.101 4.101 4 C -0.244 4.244 5 C 0.060 3.940 6 O -0.249 6.249 7 C 0.000 4.000 8 C -0.155 4.155 9 C 0.028 3.972 10 N -0.309 5.309 11 C -0.368 4.368 12 H 0.069 0.931 13 C -0.231 4.231 14 N -0.558 5.558 15 Si 0.769 3.231 16 H -0.196 1.196 17 H -0.220 1.220 18 H -0.219 1.219 19 C 0.054 3.946 20 C -0.170 4.170 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.167 4.167 24 C -0.190 4.190 25 C -0.055 4.055 26 C -0.171 4.171 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.162 0.838 31 H 0.145 0.855 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.148 0.852 49 H 0.100 0.900 50 H 0.109 0.891 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.002 -8.531 -7.780 18.148 hybrid contribution 0.547 0.482 1.380 1.561 sum -13.455 -8.049 -6.400 16.934 Atomic orbital electron populations 1.20827 0.88780 1.03812 1.02972 1.20065 0.97844 0.92003 1.03723 1.21125 0.92663 0.99008 0.97271 1.21444 0.96368 0.97020 1.09593 1.19390 0.82397 0.95208 0.97002 1.86048 1.16945 1.33283 1.88594 1.22730 0.93017 0.83089 1.01152 1.22012 0.91000 1.01171 1.01282 1.20646 0.83536 0.92485 1.00535 1.44068 1.01518 1.84080 1.01241 1.18989 1.14465 1.13526 0.89851 0.93078 1.25680 1.01409 0.94298 1.01670 1.70173 1.41745 1.13671 1.30170 0.85648 0.77368 0.77805 0.82312 1.19564 1.21994 1.21910 1.21311 0.92574 0.93334 0.87409 1.22749 0.96834 0.97840 0.99554 1.22404 0.96110 0.96675 0.99706 1.22219 0.96574 0.96516 0.99803 1.22444 0.95881 0.98386 0.99997 1.20522 0.94165 0.96026 1.08287 1.19911 0.91913 0.96833 0.96815 1.20936 1.00441 0.92239 1.03445 0.90635 0.90879 0.89902 0.83812 0.85459 0.92806 0.91188 0.92328 0.93765 0.91694 0.94903 0.94273 0.92597 0.93461 0.92163 0.90295 0.91255 0.90803 0.93656 0.92625 0.94079 0.85219 0.89985 0.89110 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.60 71.24 0.68 -0.73 16 2 C -0.14 -2.83 5.88 -19.85 -0.12 -2.95 16 3 C -0.08 -1.92 9.69 22.26 0.22 -1.71 16 4 C -0.23 -6.43 9.04 22.37 0.20 -6.23 16 5 C 0.11 3.35 6.69 22.51 0.15 3.50 16 6 O -0.33 -12.06 10.14 -92.40 -0.94 -13.00 16 7 C 0.08 2.67 4.74 71.98 0.34 3.01 16 8 C -0.11 -4.62 5.91 30.60 0.18 -4.44 16 9 C 0.15 7.07 5.28 86.38 0.46 7.52 16 10 N -0.59 -28.37 2.38 -674.01 -1.60 -29.97 16 11 C -0.24 -12.65 7.75 84.03 0.65 -12.00 16 12 H 0.05 2.79 6.94 -2.91 -0.02 2.77 16 13 C -0.03 -1.83 4.96 84.86 0.42 -1.41 16 14 N -0.91 -52.33 11.48 21.65 0.25 -52.08 16 15 Si 0.94 44.85 29.61 68.60 2.03 46.88 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 18 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 19 C 0.16 6.53 3.42 45.72 0.16 6.69 16 20 C -0.13 -4.68 6.43 31.70 0.20 -4.48 16 21 C -0.11 -3.26 6.91 31.91 0.22 -3.04 16 22 C -0.11 -3.73 6.83 31.67 0.22 -3.52 16 23 C -0.13 -5.07 6.25 31.32 0.20 -4.88 16 24 C -0.17 -4.73 9.64 22.37 0.22 -4.51 16 25 C -0.05 -1.20 5.88 -19.88 -0.12 -1.32 16 26 C -0.11 -1.64 9.60 71.23 0.68 -0.96 16 27 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 29 H 0.08 0.83 5.94 -2.39 -0.01 0.82 16 30 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.13 3.54 6.30 -2.91 -0.02 3.53 16 32 H 0.05 1.94 7.65 -2.39 -0.02 1.92 16 33 H 0.07 2.23 7.67 -2.39 -0.02 2.21 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 3.40 5.55 -2.39 -0.01 3.39 16 37 H 0.03 1.41 7.91 -2.39 -0.02 1.39 16 38 H 0.25 13.84 8.32 -92.71 -0.77 13.07 16 39 H 0.06 2.15 7.81 -2.38 -0.02 2.14 16 40 H 0.05 1.94 6.64 -2.39 -0.02 1.92 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.04 2.00 7.16 -2.39 -0.02 1.98 16 48 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 49 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 50 H 0.09 0.94 5.94 -2.39 -0.01 0.93 16 51 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 Total: -1.00 -62.51 396.96 5.58 -56.93 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.88 Total: 22.69 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 4.96 Total: -31.44 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -1.36 Total: -82.05 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.94 Total: -13.00 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -62.51 5.58 -56.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610003238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.411 kcal (2) G-P(sol) polarization free energy of solvation -62.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds