Wall clock time and date at job start Tue Mar 31 2020 11:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38270 * 119.97410 * 2 1 4 4 C 1.38267 * 120.11013 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.97012 * 180.02562 * 4 3 2 6 6 C 1.38140 * 120.05547 * 359.97438 * 4 3 2 7 7 C 1.38732 * 119.94922 * 0.02562 * 6 4 3 8 8 O 1.35901 * 120.05881 * 180.02562 * 7 6 4 9 9 C 1.42902 * 116.99779 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46688 * 179.97438 * 9 8 7 11 11 C 1.52994 * 109.46807 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.47196 * 180.02562 * 11 10 9 13 13 C 1.36937 * 120.00337 * 269.72762 * 12 11 10 14 14 H 1.07997 * 120.00434 * 141.60617 * 13 12 11 15 15 C 1.38810 * 119.99735 * 321.60987 * 13 12 11 16 16 N 1.31620 * 120.00082 * 339.34326 * 15 13 12 17 17 Si 1.86804 * 119.99889 * 159.34381 * 15 13 12 18 18 H 1.48499 * 109.46719 * 90.00195 * 17 15 13 19 19 H 1.48502 * 109.47123 * 210.00002 * 17 15 13 20 20 H 1.48493 * 109.47297 * 329.99927 * 17 15 13 21 21 C 1.46501 * 120.00038 * 89.99835 * 12 11 10 22 22 C 1.54265 * 110.03695 * 242.53339 * 21 12 11 23 23 C 1.54961 * 104.16021 * 217.13435 * 22 21 12 24 24 C 1.54885 * 102.77637 * 37.89114 * 23 22 21 25 25 C 1.53876 * 110.03342 * 125.31455 * 21 12 11 26 26 C 1.38153 * 119.97006 * 180.22875 * 2 1 3 27 27 H 1.08996 * 109.46772 * 89.99934 * 1 2 3 28 28 H 1.08991 * 109.47460 * 210.00232 * 1 2 3 29 29 H 1.08998 * 109.46880 * 330.00266 * 1 2 3 30 30 H 1.08001 * 119.94303 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.46982 * 269.97992 * 5 4 3 32 32 H 1.08997 * 109.47275 * 29.97541 * 5 4 3 33 33 H 1.08999 * 109.47147 * 149.97733 * 5 4 3 34 34 H 1.08005 * 120.02435 * 179.97438 * 6 4 3 35 35 H 1.09002 * 109.46939 * 60.00215 * 9 8 7 36 36 H 1.08992 * 109.47159 * 299.99997 * 9 8 7 37 37 H 1.09002 * 109.47055 * 60.00531 * 10 9 8 38 38 H 1.09001 * 109.47106 * 300.00460 * 10 9 8 39 39 H 1.09002 * 109.47040 * 60.00326 * 11 10 9 40 40 H 1.09001 * 109.47503 * 300.00021 * 11 10 9 41 41 H 0.96995 * 119.99942 * 175.04480 * 16 15 13 42 42 H 1.09002 * 110.01588 * 3.92758 * 21 12 11 43 43 H 1.09003 * 110.48304 * 335.78593 * 22 21 12 44 44 H 1.09003 * 110.48365 * 98.42187 * 22 21 12 45 45 H 1.08993 * 110.71971 * 279.57086 * 23 22 21 46 46 H 1.09007 * 110.91902 * 156.29668 * 23 22 21 47 47 H 1.09003 * 110.48238 * 203.40299 * 24 23 22 48 48 H 1.09001 * 110.60449 * 80.81404 * 24 23 22 49 49 H 1.09001 * 110.03484 * 238.57123 * 25 21 12 50 50 H 1.09002 * 110.03041 * 0.02562 * 25 21 12 51 51 H 1.07994 * 120.02847 * 0.02700 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5805 1.2010 0.0005 5 6 4.3302 2.5083 0.0011 6 6 4.2752 0.0070 0.0016 7 6 3.5845 -1.1961 0.0016 8 8 4.2657 -2.3721 0.0032 9 6 3.4890 -3.5716 0.0037 10 6 4.4228 -4.7837 0.0048 11 6 3.5914 -6.0680 0.0047 12 7 4.4854 -7.2285 0.0064 13 6 4.9002 -7.7751 -1.1786 14 1 5.9123 -8.1378 -1.2812 15 6 4.0198 -7.8630 -2.2482 16 7 2.7214 -7.8152 -2.0375 17 14 4.6776 -8.0491 -3.9866 18 1 4.8230 -9.4913 -4.3090 19 1 3.7318 -7.4208 -4.9437 20 1 6.0009 -7.3830 -4.0891 21 6 4.9311 -7.8080 1.2760 22 6 6.4642 -7.6911 1.4011 23 6 6.8890 -9.0076 2.0996 24 6 5.9421 -10.0545 1.4622 25 6 4.5990 -9.3100 1.3152 26 6 2.1972 -1.1968 -0.0048 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6565 2.1323 -0.0004 31 1 4.5116 2.8235 -1.0265 32 1 3.7386 3.2662 0.5145 33 1 5.2826 2.3807 0.5156 34 1 5.3552 0.0102 0.0016 35 1 2.8610 -3.5982 -0.8868 36 1 2.8596 -3.5966 0.8931 37 1 5.0512 -4.7573 0.8951 38 1 5.0520 -4.7584 -0.8849 39 1 2.9633 -6.0941 -0.8858 40 1 2.9619 -6.0934 0.8942 41 1 2.1082 -7.8042 -2.7889 42 1 4.4484 -7.2971 2.1091 43 1 6.9228 -7.6173 0.4150 44 1 6.7324 -6.8299 2.0130 45 1 6.7258 -8.9433 3.1753 46 1 7.9303 -9.2452 1.8818 47 1 5.8301 -10.9173 2.1188 48 1 6.3150 -10.3649 0.4861 49 1 3.9560 -9.5281 2.1679 50 1 4.1067 -9.6079 0.3895 51 1 1.6572 -2.1320 -0.0090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610012863.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:34 Heat of formation + Delta-G solvation = -35.595210 kcal Electronic energy + Delta-G solvation = -26527.907325 eV Core-core repulsion = 23005.277175 eV Total energy + Delta-G solvation = -3522.630150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19760 -39.44383 -38.83355 -36.42078 -34.48072 -33.92045 -32.49140 -31.38778 -29.31515 -28.36214 -28.09348 -27.93266 -26.97372 -24.50096 -22.67065 -22.41334 -21.41665 -21.19357 -20.73797 -18.65002 -17.99983 -17.33203 -17.12277 -16.92349 -16.85451 -16.45625 -15.99634 -15.18016 -15.08626 -14.75932 -14.67705 -14.37703 -14.23635 -14.03663 -14.01500 -13.95400 -13.63780 -13.33848 -13.15944 -12.88292 -12.73107 -12.67633 -12.46479 -12.36497 -12.32837 -12.16073 -12.06264 -11.81925 -11.76198 -11.71590 -11.66708 -11.57542 -11.29283 -11.22676 -11.15084 -10.44763 -9.59567 -9.11841 -8.52222 -7.75251 -5.42722 0.33121 0.47594 1.42194 1.46553 1.54314 2.19505 2.53038 2.74142 3.27546 3.60816 3.78589 3.86625 3.98573 3.99742 4.04495 4.09450 4.15727 4.28682 4.34852 4.40151 4.44775 4.49503 4.62667 4.66885 4.70544 4.76653 4.78744 4.79318 4.84309 4.85800 4.94822 4.96890 4.99395 5.00060 5.03908 5.12160 5.22256 5.24546 5.30884 5.34388 5.37343 5.41658 5.56404 5.59515 5.62996 5.65851 5.68822 5.73343 5.85459 5.91452 6.47062 6.52835 7.22372 7.91887 8.44124 9.15932 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.002932 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.294748 B = 9547.856505 C =10390.906519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.167 4.167 4 C -0.048 4.048 5 C -0.111 4.111 6 C -0.183 4.183 7 C 0.116 3.884 8 O -0.334 6.334 9 C 0.076 3.924 10 C -0.115 4.115 11 C 0.155 3.845 12 N -0.589 5.589 13 C -0.240 4.240 14 H 0.051 0.949 15 C -0.032 4.032 16 N -0.913 5.913 17 Si 0.939 3.061 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.277 1.277 21 C 0.160 3.840 22 C -0.130 4.130 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.128 4.128 26 C -0.234 4.234 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.149 0.851 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.032 0.968 41 H 0.248 0.752 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.044 0.956 49 H 0.055 0.945 50 H 0.040 0.960 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 15.610 7.768 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.050 4.050 3 C -0.185 4.185 4 C -0.048 4.048 5 C -0.167 4.167 6 C -0.202 4.202 7 C 0.071 3.929 8 O -0.248 6.248 9 C 0.001 3.999 10 C -0.155 4.155 11 C 0.029 3.971 12 N -0.309 5.309 13 C -0.371 4.371 14 H 0.069 0.931 15 C -0.229 4.229 16 N -0.557 5.557 17 Si 0.768 3.232 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.202 1.202 21 C 0.053 3.947 22 C -0.170 4.170 23 C -0.149 4.149 24 C -0.151 4.151 25 C -0.167 4.167 26 C -0.253 4.253 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.167 0.833 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.059 0.941 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.313 15.474 7.669 17.273 hybrid contribution -0.056 -0.632 -1.364 1.505 sum -0.369 14.842 6.304 16.129 Atomic orbital electron populations 1.20870 0.89085 1.03848 1.03253 1.20075 0.97500 0.92090 0.95383 1.21138 0.93466 0.98187 1.05690 1.20060 0.94168 0.95082 0.95465 1.20856 1.00106 0.92311 1.03437 1.20514 1.00522 0.89725 1.09417 1.19389 0.91336 0.86174 0.96015 1.86054 1.37195 1.13068 1.88471 1.22728 0.94315 0.81762 1.01138 1.22016 0.98861 0.93301 1.01294 1.20639 0.91867 0.84112 1.00520 1.44060 1.55897 1.29692 1.01212 1.18955 0.93443 1.34654 0.90062 0.93101 1.25673 0.95017 1.00552 1.01667 1.70163 1.01535 1.53703 1.30331 0.85734 0.77797 0.77582 0.82074 1.21199 1.21915 1.20188 1.21314 0.93520 0.92413 0.87415 1.22747 0.97073 0.97591 0.99546 1.22403 0.98716 0.94076 0.99698 1.22216 0.95152 0.97943 0.99794 1.22443 0.97439 0.96833 0.99988 1.21324 0.92849 0.99941 1.11180 0.90226 0.91431 0.89371 0.83316 0.89964 0.89516 0.90909 0.85286 0.92806 0.91230 0.92330 0.93750 0.91686 0.94947 0.94243 0.92612 0.93456 0.92178 0.90300 0.91244 0.90810 0.93662 0.92638 0.94081 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 10.01 71.24 0.71 -1.22 16 2 C -0.05 -1.18 5.88 -19.88 -0.12 -1.29 16 3 C -0.17 -3.44 9.35 22.28 0.21 -3.24 16 4 C -0.05 -1.04 5.88 -19.88 -0.12 -1.16 16 5 C -0.11 -1.57 10.01 71.23 0.71 -0.86 16 6 C -0.18 -5.06 9.64 22.36 0.22 -4.84 16 7 C 0.12 3.71 6.69 22.51 0.15 3.86 16 8 O -0.33 -12.07 10.14 -92.43 -0.94 -13.00 16 9 C 0.08 2.69 4.74 71.98 0.34 3.03 16 10 C -0.11 -4.63 5.91 30.59 0.18 -4.45 16 11 C 0.16 7.10 5.28 86.38 0.46 7.56 16 12 N -0.59 -28.37 2.38 -674.02 -1.60 -29.97 16 13 C -0.24 -12.81 7.74 84.03 0.65 -12.16 16 14 H 0.05 2.77 6.95 -2.91 -0.02 2.75 16 15 C -0.03 -1.75 4.96 84.86 0.42 -1.33 16 16 N -0.91 -52.23 11.48 21.65 0.25 -51.98 16 17 Si 0.94 44.76 29.61 68.60 2.03 46.79 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 C 0.16 6.53 3.42 45.72 0.16 6.68 16 22 C -0.13 -4.68 6.43 31.69 0.20 -4.48 16 23 C -0.11 -3.26 6.91 31.91 0.22 -3.04 16 24 C -0.11 -3.74 6.83 31.67 0.22 -3.52 16 25 C -0.13 -5.08 6.24 31.32 0.20 -4.88 16 26 C -0.23 -6.75 8.69 22.37 0.19 -6.56 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 29 H 0.09 1.10 8.08 -2.39 -0.02 1.09 16 30 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 31 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 33 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 34 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.05 1.94 7.65 -2.39 -0.02 1.93 16 36 H 0.07 2.23 7.67 -2.39 -0.02 2.21 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 3.40 5.55 -2.39 -0.01 3.39 16 40 H 0.03 1.39 7.90 -2.39 -0.02 1.37 16 41 H 0.25 13.87 8.32 -92.71 -0.77 13.09 16 42 H 0.06 2.15 7.81 -2.39 -0.02 2.13 16 43 H 0.05 1.94 6.66 -2.39 -0.02 1.93 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 49 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.04 2.00 7.15 -2.39 -0.02 1.98 16 51 H 0.13 3.56 6.30 -2.91 -0.02 3.55 16 Total: -1.00 -62.33 401.38 5.61 -56.72 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.87 Total: 23.33 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 5.00 Total: -31.89 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -1.36 Total: -81.95 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.94 Total: -13.00 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -62.33 5.61 -56.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610012863.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.124 kcal (2) G-P(sol) polarization free energy of solvation -62.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds