Wall clock time and date at job start Tue Mar 31 2020 11:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38753 * 120.05357 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94329 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.97228 * 179.97438 * 5 4 3 7 7 C 1.38288 * 120.05386 * 0.02562 * 5 4 3 8 8 C 1.50700 * 119.93986 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47379 * 39.97986 * 8 7 5 10 10 C 1.52998 * 109.47642 * 279.97135 * 8 7 5 11 11 N 1.46906 * 109.46916 * 159.97076 * 8 7 5 12 12 C 1.46842 * 111.00122 * 304.21447 * 11 8 7 13 13 C 1.53035 * 109.52288 * 174.15977 * 12 11 8 14 14 C 1.53120 * 109.28171 * 59.17560 * 13 12 11 15 15 C 1.50703 * 109.52548 * 182.43941 * 14 13 12 16 16 H 1.07999 * 119.99580 * 119.68303 * 15 14 13 17 17 C 1.37874 * 120.00194 * 299.68775 * 15 14 13 18 18 N 1.31507 * 120.00088 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99939 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47063 * 90.00390 * 19 17 15 21 21 H 1.48495 * 109.47201 * 210.00173 * 19 17 15 22 22 H 1.48504 * 109.47246 * 330.00657 * 19 17 15 23 23 C 1.53118 * 109.15947 * 302.34608 * 14 13 12 24 24 C 1.46842 * 111.00108 * 180.02562 * 11 8 7 25 25 C 1.38244 * 120.11305 * 359.97438 * 7 5 4 26 26 C 1.38165 * 120.05319 * 0.02562 * 25 7 5 27 27 C 1.50705 * 120.02348 * 180.02562 * 26 25 7 28 28 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 30 30 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 31 31 H 1.08001 * 120.02917 * 359.97438 * 4 3 2 32 32 H 1.08995 * 109.47290 * 90.00077 * 6 5 4 33 33 H 1.09003 * 109.47341 * 210.00462 * 6 5 4 34 34 H 1.08996 * 109.47181 * 330.00312 * 6 5 4 35 35 H 1.09006 * 109.46691 * 60.00070 * 10 8 7 36 36 H 1.08995 * 109.47525 * 180.02562 * 10 8 7 37 37 H 1.08999 * 109.46799 * 300.00405 * 10 8 7 38 38 H 1.09005 * 109.46154 * 294.16856 * 12 11 8 39 39 H 1.08992 * 109.46554 * 54.14274 * 12 11 8 40 40 H 1.09000 * 109.50158 * 299.23429 * 13 12 11 41 41 H 1.09004 * 109.50238 * 179.11749 * 13 12 11 42 42 H 1.09002 * 109.51889 * 62.25190 * 14 13 12 43 43 H 0.97002 * 119.99852 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.50337 * 297.71206 * 23 14 13 45 45 H 1.09001 * 109.50125 * 177.58936 * 23 14 13 46 46 H 1.09007 * 109.46194 * 305.85801 * 24 11 8 47 47 H 1.09001 * 109.46340 * 65.82504 * 24 11 8 48 48 H 1.08002 * 119.97061 * 180.28475 * 25 7 5 49 49 H 1.08996 * 109.46822 * 89.99914 * 27 26 25 50 50 H 1.09000 * 109.46594 * 210.00119 * 27 26 25 51 51 H 1.08998 * 109.46800 * 329.99997 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 1.1021 4.8698 -0.0022 7 6 3.3020 3.6757 -0.0016 8 6 3.9862 5.0184 -0.0016 9 1 3.4498 5.6995 0.6590 10 6 3.9946 5.5866 -1.4221 11 7 5.3681 4.8638 0.4722 12 6 5.4028 4.2274 1.7951 13 6 6.8548 3.9507 2.1915 14 6 7.6317 5.2699 2.2186 15 6 9.0763 4.9970 2.5500 16 1 9.8518 5.2708 1.8501 17 6 9.4077 4.3978 3.7467 18 7 10.6683 4.1592 4.0356 19 14 8.0662 3.9248 4.9575 20 1 7.6106 2.5397 4.6754 21 1 8.6001 3.9980 6.3413 22 1 6.9214 4.8604 4.8184 23 6 7.5392 5.9359 0.8430 24 6 6.0672 6.1551 0.4862 25 6 4.0560 2.5170 -0.0011 26 6 3.4311 1.2847 -0.0005 27 6 4.2537 0.0220 0.0006 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2129 2.3203 -0.0014 32 1 0.9042 5.1755 1.0251 33 1 1.6519 5.6581 -0.5164 34 1 0.1577 4.6909 -0.5163 35 1 2.9692 5.7013 -1.7736 36 1 4.4898 6.5576 -1.4222 37 1 4.5311 4.9055 -2.0827 38 1 4.9460 4.8909 2.5294 39 1 4.8505 3.2884 1.7609 40 1 7.3081 3.2762 1.4651 41 1 6.8810 3.4925 3.1803 42 1 7.2024 5.9299 2.9725 43 1 10.9015 3.7379 4.8777 44 1 8.0034 5.2927 0.0954 45 1 8.0544 6.8961 0.8682 46 1 5.9974 6.6166 -0.4989 47 1 5.6071 6.8092 1.2269 48 1 5.1345 2.5750 0.0032 49 1 4.4516 -0.2817 1.0285 50 1 3.7065 -0.7685 -0.5130 51 1 5.1979 0.2031 -0.5129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614963484.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:29 Heat of formation + Delta-G solvation = -30.877600 kcal Electronic energy + Delta-G solvation = -28055.182339 eV Core-core repulsion = 24532.756760 eV Total energy + Delta-G solvation = -3522.425579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61409 -40.25700 -38.58555 -36.22924 -34.91464 -33.96527 -32.09011 -31.58141 -30.19989 -29.74382 -28.29485 -27.44283 -25.80214 -24.52840 -23.69083 -23.15844 -22.18392 -20.70224 -20.44612 -18.82983 -18.39922 -17.80500 -17.02563 -16.67701 -16.42540 -16.06412 -15.77323 -15.40307 -15.17849 -14.87911 -14.74316 -14.52608 -14.41577 -14.29825 -14.16046 -13.96599 -13.75313 -13.48009 -13.21741 -13.07423 -13.02582 -12.82086 -12.68966 -12.64847 -12.54204 -12.29474 -12.13200 -12.08918 -11.81927 -11.65274 -11.57479 -11.50008 -11.29284 -10.93142 -10.75070 -10.59192 -9.52278 -9.20152 -8.84735 -8.29775 -6.31779 0.39172 0.48146 1.28012 1.31896 1.42410 2.31001 2.42260 2.72611 2.93649 3.05927 3.73352 3.84204 3.92603 4.09803 4.14183 4.20307 4.24728 4.28271 4.35048 4.39269 4.40242 4.46516 4.52875 4.61174 4.65561 4.67983 4.71358 4.74173 4.78987 4.80497 4.81548 4.84412 4.89221 4.90510 4.96157 5.00050 5.09040 5.16915 5.19972 5.26812 5.34403 5.42457 5.47337 5.51545 5.55652 5.66965 5.73335 5.80036 5.93632 6.20471 6.34331 6.35021 6.50613 6.75434 7.33287 8.87460 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.004053 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.564604 B = 6907.044697 C = 8004.784791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.115 3.885 4 C -0.208 4.208 5 C -0.052 4.052 6 C -0.119 4.119 7 C -0.120 4.120 8 C 0.126 3.874 9 H 0.052 0.948 10 C -0.137 4.137 11 N -0.533 5.533 12 C 0.058 3.942 13 C -0.110 4.110 14 C 0.013 3.987 15 C -0.513 4.513 16 H 0.034 0.966 17 C 0.012 3.988 18 N -0.951 5.951 19 Si 0.947 3.053 20 H -0.269 1.269 21 H -0.298 1.298 22 H -0.251 1.251 23 C -0.091 4.091 24 C 0.063 3.937 25 C -0.070 4.070 26 C -0.146 4.146 27 C -0.101 4.101 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.149 0.851 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.021 0.979 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.033 0.967 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.030 0.970 48 H 0.129 0.871 49 H 0.062 0.938 50 H 0.070 0.930 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.688 -2.572 -10.970 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.070 3.930 4 C -0.227 4.227 5 C -0.053 4.053 6 C -0.175 4.175 7 C -0.120 4.120 8 C 0.019 3.981 9 H 0.070 0.930 10 C -0.194 4.194 11 N -0.258 5.258 12 C -0.069 4.069 13 C -0.148 4.148 14 C -0.006 4.006 15 C -0.551 4.551 16 H 0.052 0.948 17 C -0.184 4.184 18 N -0.592 5.592 19 Si 0.775 3.225 20 H -0.195 1.195 21 H -0.226 1.226 22 H -0.176 1.176 23 C -0.129 4.129 24 C -0.064 4.064 25 C -0.088 4.088 26 C -0.147 4.147 27 C -0.157 4.157 28 H 0.135 0.865 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.167 0.833 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.116 0.884 47 H 0.048 0.952 48 H 0.147 0.853 49 H 0.081 0.919 50 H 0.089 0.911 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.256 -3.126 -11.189 28.711 hybrid contribution -0.105 0.076 1.580 1.585 sum -26.361 -3.050 -9.609 28.223 Atomic orbital electron populations 1.23305 0.76755 1.05343 1.02090 1.86035 1.23147 1.26731 1.88744 1.18935 0.91699 0.84871 0.97469 1.21221 1.00657 0.91082 1.09703 1.19733 0.92698 0.95780 0.97049 1.20966 0.99634 0.93821 1.03075 1.19633 0.93075 0.94633 1.04686 1.20477 0.87123 0.92879 0.97666 0.93035 1.21888 1.02781 1.00935 0.93815 1.61871 1.15003 1.23622 1.25337 1.22192 0.96369 0.99254 0.89127 1.21837 0.94844 0.99448 0.98666 1.19147 0.93225 0.93235 0.95002 1.21418 0.92630 1.38385 1.02689 0.94804 1.25837 0.97191 0.95518 0.99888 1.70048 1.18897 1.45267 1.24998 0.85865 0.79923 0.79568 0.77171 1.19490 1.22625 1.17565 1.21386 0.95348 0.99658 0.96518 1.22149 0.93543 0.89296 1.01410 1.20953 1.00531 0.90661 0.96690 1.19470 0.91387 0.96421 1.07375 1.20558 0.98830 0.94274 1.02075 0.86537 0.92053 0.91682 0.83313 0.90694 0.90248 0.89821 0.90282 0.91221 0.92618 0.96115 0.89989 0.92546 0.94885 0.96722 0.92671 0.93003 0.92464 0.88433 0.95179 0.85293 0.91913 0.91075 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.26 9.54 -92.40 -0.88 -8.14 16 3 C 0.12 2.81 6.66 22.50 0.15 2.96 16 4 C -0.21 -4.27 8.69 22.37 0.19 -4.07 16 5 C -0.05 -1.10 5.87 -19.88 -0.12 -1.21 16 6 C -0.12 -1.73 9.24 71.24 0.66 -1.07 16 7 C -0.12 -3.01 4.42 -19.85 -0.09 -3.10 16 8 C 0.13 3.08 1.61 44.17 0.07 3.15 16 9 H 0.05 1.21 7.28 -2.39 -0.02 1.19 16 10 C -0.14 -2.70 8.71 71.98 0.63 -2.08 16 11 N -0.53 -16.35 3.70 -875.50 -3.24 -19.58 16 12 C 0.06 2.05 4.54 86.33 0.39 2.44 16 13 C -0.11 -4.79 4.84 30.65 0.15 -4.64 16 14 C 0.01 0.60 1.75 -11.46 -0.02 0.58 16 15 C -0.51 -29.96 9.14 25.60 0.23 -29.73 16 16 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 17 C 0.01 0.73 5.45 84.65 0.46 1.19 16 18 N -0.95 -60.97 13.96 21.44 0.30 -60.67 16 19 Si 0.95 46.78 24.37 68.60 1.67 48.45 16 20 H -0.27 -12.75 6.89 99.48 0.69 -12.07 16 21 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 22 H -0.25 -11.64 6.53 99.48 0.65 -10.99 16 23 C -0.09 -3.59 5.32 30.65 0.16 -3.43 16 24 C 0.06 1.94 5.22 86.33 0.45 2.39 16 25 C -0.07 -2.00 6.89 22.25 0.15 -1.84 16 26 C -0.15 -3.97 5.89 -19.77 -0.12 -4.09 16 27 C -0.10 -2.53 9.79 71.24 0.70 -1.83 16 28 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 30 H 0.06 0.65 7.66 -2.38 -0.02 0.63 16 31 H 0.15 2.18 6.30 -2.91 -0.02 2.16 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.08 4.99 -2.39 -0.01 1.07 16 34 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.08 1.24 6.38 -2.38 -0.02 1.22 16 36 H 0.07 1.25 6.28 -2.39 -0.02 1.24 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.08 2.78 4.92 -2.39 -0.01 2.77 16 40 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 41 H 0.03 1.51 3.38 -2.38 -0.01 1.50 16 42 H 0.01 0.71 7.19 -2.39 -0.02 0.70 16 43 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 44 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.10 2.46 6.01 -2.38 -0.01 2.45 16 47 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.13 4.10 6.44 -2.91 -0.02 4.08 16 49 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.07 1.65 7.53 -2.39 -0.02 1.63 16 51 H 0.07 1.61 8.09 -2.39 -0.02 1.59 16 Total: -1.00 -69.59 373.71 3.86 -65.73 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.83 Total: 17.23 kcal Atomic # 6 Polarization: -48.20 SS G_CDS: 5.17 Total: -43.02 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -2.94 Total: -80.25 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.88 Total: -8.14 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.67 Total: 48.45 kcal Total: -69.59 3.86 -65.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614963484.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.857 kcal (2) G-P(sol) polarization free energy of solvation -69.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds