Wall clock time and date at job start Tue Mar 31 2020 11:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00252 * 2 1 4 4 C 1.38752 * 120.05701 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94776 * 179.74898 * 4 3 2 6 6 C 1.50701 * 119.97391 * 180.27000 * 5 4 3 7 7 C 1.38288 * 120.05392 * 0.54884 * 5 4 3 8 8 C 1.50696 * 119.94710 * 179.72320 * 7 5 4 9 9 H 1.08999 * 109.47129 * 327.10284 * 8 7 5 10 10 C 1.53001 * 109.47011 * 87.09631 * 8 7 5 11 11 N 1.46896 * 109.47481 * 207.09927 * 8 7 5 12 12 C 1.46846 * 111.00111 * 64.08153 * 11 8 7 13 13 C 1.53035 * 109.52254 * 185.83904 * 12 11 8 14 14 C 1.53118 * 109.27947 * 300.82311 * 13 12 11 15 15 C 1.50698 * 109.51966 * 177.56180 * 14 13 12 16 16 H 1.07998 * 120.00151 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99892 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99904 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99828 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47006 * 89.99918 * 19 17 15 21 21 H 1.48494 * 109.46842 * 209.99871 * 19 17 15 22 22 H 1.48501 * 109.46881 * 329.99811 * 19 17 15 23 23 C 1.53115 * 109.16255 * 57.65440 * 14 13 12 24 24 C 1.46850 * 110.99892 * 188.29476 * 11 8 7 25 25 C 1.38250 * 120.10842 * 359.44942 * 7 5 4 26 26 C 1.38165 * 120.05599 * 0.27609 * 25 7 5 27 27 C 1.50698 * 120.02374 * 180.02562 * 26 25 7 28 28 H 1.09000 * 109.46904 * 300.00414 * 1 2 3 29 29 H 1.09005 * 109.46980 * 60.00431 * 1 2 3 30 30 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.02548 * 0.02562 * 4 3 2 32 32 H 1.08996 * 109.47448 * 270.27659 * 6 5 4 33 33 H 1.09002 * 109.46908 * 30.27578 * 6 5 4 34 34 H 1.09003 * 109.47107 * 150.27668 * 6 5 4 35 35 H 1.08999 * 109.47135 * 60.00166 * 10 8 7 36 36 H 1.09000 * 109.47314 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47003 * 300.00322 * 10 8 7 38 38 H 1.09001 * 109.45935 * 65.82544 * 12 11 8 39 39 H 1.08997 * 109.46282 * 305.85833 * 12 11 8 40 40 H 1.09003 * 109.50168 * 180.88193 * 13 12 11 41 41 H 1.08997 * 109.50209 * 60.76971 * 13 12 11 42 42 H 1.09002 * 109.51969 * 297.74846 * 14 13 12 43 43 H 0.97003 * 119.99384 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.49998 * 62.28222 * 23 14 13 45 45 H 1.08995 * 109.50534 * 182.40459 * 23 14 13 46 46 H 1.08990 * 109.45969 * 294.17370 * 24 11 8 47 47 H 1.08995 * 109.46327 * 54.14675 * 24 11 8 48 48 H 1.07998 * 119.96718 * 180.24732 * 25 7 5 49 49 H 1.08996 * 109.47394 * 90.00358 * 27 26 25 50 50 H 1.09005 * 109.46641 * 209.99913 * 27 26 25 51 51 H 1.08999 * 109.47538 * 329.99344 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9210 3.6047 0.0047 6 6 1.1021 4.8698 0.0103 7 6 3.3020 3.6757 -0.0010 8 6 3.9862 5.0184 -0.0015 9 1 3.3801 5.7349 -0.5559 10 6 4.1587 5.5035 1.4392 11 7 5.3044 4.8961 -0.6382 12 6 5.1732 4.5252 -2.0530 13 6 6.5605 4.2652 -2.6443 14 6 7.4141 5.5288 -2.5056 15 6 8.8004 5.2602 -3.0319 16 1 9.0491 4.2858 -3.4258 17 6 9.7517 6.2581 -3.0096 18 7 10.9616 6.0235 -3.4684 19 14 9.3217 7.9432 -2.3276 20 1 9.6113 7.9764 -0.8715 21 1 10.1330 8.9780 -3.0174 22 1 7.8790 8.2144 -2.5517 23 6 7.4949 5.9210 -1.0277 24 6 6.0805 6.1331 -0.4832 25 6 4.0561 2.5170 -0.0004 26 6 3.4311 1.2847 0.0000 27 6 4.2538 0.0221 0.0012 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2129 2.3203 -0.0005 32 1 0.9003 5.1766 -1.0160 33 1 0.1597 4.6903 0.5277 34 1 1.6539 5.6576 0.5232 35 1 4.7649 4.7871 1.9937 36 1 4.6532 6.4749 1.4389 37 1 3.1806 5.5943 1.9116 38 1 4.6924 5.3375 -2.5982 39 1 4.5675 3.6230 -2.1372 40 1 6.4639 4.0052 -3.6985 41 1 7.0363 3.4439 -2.1085 42 1 6.9587 6.3401 -3.0735 43 1 11.6309 6.7255 -3.4524 44 1 7.9854 5.1257 -0.4665 45 1 8.0659 6.8439 -0.9269 46 1 5.5955 6.9376 -1.0358 47 1 6.1339 6.3985 0.5726 48 1 5.1345 2.5751 -0.0008 49 1 4.4516 -0.2818 1.0291 50 1 3.7066 -0.7685 -0.5124 51 1 5.1980 0.2031 -0.5123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614963485.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:32 Heat of formation + Delta-G solvation = -35.000449 kcal Electronic energy + Delta-G solvation = -27860.938780 eV Core-core repulsion = 24338.334422 eV Total energy + Delta-G solvation = -3522.604359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51596 -40.23587 -38.59453 -36.21681 -34.83636 -33.97922 -31.98881 -31.62949 -30.15994 -29.70766 -28.28355 -27.50650 -25.74778 -24.42447 -23.85015 -23.14989 -22.04200 -20.69653 -20.42812 -18.81244 -18.35597 -17.79957 -17.06916 -16.65894 -16.35665 -16.05757 -15.71920 -15.34109 -15.19128 -14.85901 -14.77990 -14.49479 -14.30978 -14.22668 -14.09926 -14.02007 -13.71253 -13.57294 -13.28486 -13.17278 -12.85294 -12.76371 -12.70571 -12.60180 -12.51772 -12.40848 -12.12183 -12.00069 -11.76141 -11.70273 -11.61501 -11.46954 -11.28292 -10.93794 -10.76363 -10.57171 -9.52843 -9.17377 -8.83023 -8.28190 -6.31137 0.42513 0.52008 1.30244 1.35485 1.46326 2.33707 2.44703 2.75279 2.96091 3.07259 3.76950 3.86296 3.95642 4.09879 4.14187 4.19353 4.28243 4.32483 4.35497 4.40283 4.41756 4.46918 4.49575 4.63420 4.66049 4.69768 4.73678 4.76317 4.79284 4.81402 4.84540 4.85087 4.88949 4.93152 4.95464 5.00463 5.08136 5.18421 5.19974 5.27936 5.35102 5.43715 5.46092 5.52300 5.56165 5.68309 5.76020 5.82502 5.96932 6.22480 6.34622 6.35240 6.52931 6.75852 7.33900 8.89155 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020887 B = 0.003405 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.208834 B = 8221.768339 C = 9028.956271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.115 3.885 4 C -0.208 4.208 5 C -0.053 4.053 6 C -0.117 4.117 7 C -0.115 4.115 8 C 0.126 3.874 9 H 0.053 0.947 10 C -0.141 4.141 11 N -0.533 5.533 12 C 0.070 3.930 13 C -0.089 4.089 14 C 0.014 3.986 15 C -0.515 4.515 16 H 0.029 0.971 17 C 0.008 3.992 18 N -0.954 5.954 19 Si 0.953 3.047 20 H -0.263 1.263 21 H -0.301 1.301 22 H -0.248 1.248 23 C -0.112 4.112 24 C 0.060 3.940 25 C -0.063 4.063 26 C -0.144 4.144 27 C -0.100 4.100 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.148 0.852 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.016 0.984 43 H 0.264 0.736 44 H 0.055 0.945 45 H 0.039 0.961 46 H 0.029 0.971 47 H 0.094 0.906 48 H 0.127 0.873 49 H 0.070 0.930 50 H 0.066 0.934 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.348 -5.409 11.682 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.070 3.930 4 C -0.227 4.227 5 C -0.054 4.054 6 C -0.173 4.173 7 C -0.115 4.115 8 C 0.018 3.982 9 H 0.071 0.929 10 C -0.198 4.198 11 N -0.258 5.258 12 C -0.058 4.058 13 C -0.127 4.127 14 C -0.005 4.005 15 C -0.554 4.554 16 H 0.047 0.953 17 C -0.188 4.188 18 N -0.595 5.595 19 Si 0.780 3.220 20 H -0.189 1.189 21 H -0.229 1.229 22 H -0.172 1.172 23 C -0.150 4.150 24 C -0.068 4.068 25 C -0.081 4.081 26 C -0.145 4.145 27 C -0.156 4.156 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.165 0.835 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.047 0.953 47 H 0.112 0.888 48 H 0.145 0.855 49 H 0.088 0.912 50 H 0.085 0.915 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.865 -5.913 11.891 29.075 hybrid contribution 0.248 1.201 -0.665 1.395 sum -25.617 -4.713 11.226 28.363 Atomic orbital electron populations 1.23297 0.76814 1.05316 1.02046 1.86033 1.23088 1.26758 1.88766 1.18940 0.91768 0.84790 0.97543 1.21202 1.00601 0.91118 1.09762 1.19731 0.92802 0.95658 0.97216 1.20909 0.99570 0.93833 1.02998 1.19564 0.92832 0.94560 1.04592 1.20473 0.88237 0.93165 0.96327 0.92899 1.21927 1.02707 1.01295 0.93911 1.61851 1.15989 1.33412 1.14536 1.21994 0.96512 0.99765 0.87530 1.21360 0.94444 0.97981 0.98939 1.19129 0.93689 0.94945 0.92729 1.21409 0.96240 0.98010 1.39696 0.95265 1.25930 0.94531 1.02987 0.95392 1.70068 1.04941 1.35245 1.49196 0.85782 0.79077 0.78715 0.78471 1.18901 1.22893 1.17155 1.21853 0.95739 0.99547 0.97885 1.22160 0.93229 0.90039 1.01340 1.20856 1.00388 0.90428 0.96416 1.19478 0.91276 0.96500 1.07229 1.20548 0.98664 0.94110 1.02301 0.91773 0.92073 0.86544 0.83477 0.90697 0.89902 0.90676 0.92458 0.91474 0.90500 0.95543 0.90503 0.93173 0.93129 0.96613 0.92679 0.92596 0.94330 0.95278 0.88803 0.85491 0.91175 0.91504 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.98 9.54 -92.35 -0.88 -7.86 16 3 C 0.11 2.68 6.66 22.51 0.15 2.83 16 4 C -0.21 -4.15 8.69 22.37 0.19 -3.95 16 5 C -0.05 -1.10 5.88 -19.88 -0.12 -1.22 16 6 C -0.12 -1.71 9.20 71.24 0.66 -1.06 16 7 C -0.11 -2.79 4.17 -19.85 -0.08 -2.88 16 8 C 0.13 3.04 1.59 44.17 0.07 3.11 16 9 H 0.05 1.23 6.86 -2.39 -0.02 1.21 16 10 C -0.14 -2.90 8.50 71.98 0.61 -2.28 16 11 N -0.53 -16.20 3.50 -875.55 -3.06 -19.27 16 12 C 0.07 2.30 5.04 86.33 0.44 2.73 16 13 C -0.09 -3.65 5.32 30.65 0.16 -3.49 16 14 C 0.01 0.66 1.75 -11.46 -0.02 0.64 16 15 C -0.52 -30.19 9.14 25.60 0.23 -29.95 16 16 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 17 C 0.01 0.47 5.45 84.66 0.46 0.93 16 18 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 19 Si 0.95 45.72 24.37 68.60 1.67 47.39 16 20 H -0.26 -11.90 6.89 99.48 0.69 -11.22 16 21 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 22 H -0.25 -10.99 6.53 99.48 0.65 -10.34 16 23 C -0.11 -4.71 4.84 30.65 0.15 -4.57 16 24 C 0.06 1.94 5.03 86.33 0.43 2.37 16 25 C -0.06 -1.70 7.65 22.26 0.17 -1.53 16 26 C -0.14 -3.72 5.89 -19.77 -0.12 -3.84 16 27 C -0.10 -2.33 9.79 71.24 0.70 -1.63 16 28 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 29 H 0.06 0.63 7.66 -2.38 -0.02 0.61 16 30 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.15 2.11 6.30 -2.91 -0.02 2.09 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 34 H 0.07 1.05 5.60 -2.39 -0.01 1.04 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.31 6.19 -2.39 -0.01 1.29 16 37 H 0.08 1.27 7.11 -2.39 -0.02 1.26 16 38 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 2.40 6.18 -2.39 -0.01 2.39 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.02 0.76 7.19 -2.39 -0.02 0.74 16 43 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 44 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.04 1.67 3.38 -2.39 -0.01 1.67 16 46 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.09 2.61 5.84 -2.39 -0.01 2.60 16 48 H 0.13 3.83 7.27 -2.91 -0.02 3.81 16 49 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.07 1.51 7.53 -2.38 -0.02 1.49 16 51 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 Total: -1.00 -69.19 376.83 4.05 -65.14 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.82 Total: 17.83 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 5.20 Total: -42.43 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -2.76 Total: -80.07 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.88 Total: -7.86 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.67 Total: 47.39 kcal Total: -69.19 4.05 -65.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614963485.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.136 kcal (2) G-P(sol) polarization free energy of solvation -69.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds