Wall clock time and date at job start Tue Mar 31 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99821 * 2 1 4 4 C 1.52996 * 109.47012 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47100 * 66.68921 * 4 3 2 6 6 C 1.46904 * 111.00137 * 282.99008 * 5 4 3 7 7 C 1.50693 * 109.47006 * 304.58950 * 6 5 4 8 8 H 1.08004 * 120.00291 * 354.84042 * 7 6 5 9 9 C 1.37882 * 120.00334 * 174.83982 * 7 6 5 10 10 N 1.31512 * 119.99661 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00156 * 179.72507 * 9 7 6 12 12 H 1.48506 * 109.47457 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47420 * 120.00231 * 11 9 7 14 14 H 1.48497 * 109.47109 * 240.00108 * 11 9 7 15 15 C 1.46906 * 111.00187 * 159.03620 * 5 4 3 16 16 H 1.08997 * 110.43000 * 58.10450 * 15 5 4 17 17 C 1.54886 * 110.48196 * 295.56346 * 15 5 4 18 18 C 1.54900 * 102.74513 * 203.37741 * 17 15 5 19 19 C 1.54259 * 104.19384 * 37.94534 * 18 17 15 20 20 C 1.53001 * 110.03382 * 95.72606 * 19 18 17 21 21 C 1.50704 * 110.03138 * 217.10476 * 19 18 17 22 22 C 1.38239 * 119.99664 * 244.52070 * 21 19 18 23 23 C 1.38235 * 119.99675 * 179.78434 * 22 21 19 24 24 C 1.38238 * 119.99591 * 0.47018 * 23 22 21 25 25 C 1.38226 * 120.00609 * 359.76447 * 24 23 22 26 26 C 1.38230 * 120.00151 * 64.79881 * 21 19 18 27 27 C 1.53878 * 106.60067 * 336.38923 * 19 18 17 28 28 H 1.08999 * 109.46814 * 59.99876 * 1 2 3 29 29 H 1.09003 * 109.46580 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46990 * 299.99868 * 1 2 3 31 31 H 1.09001 * 109.46704 * 60.00195 * 3 2 1 32 32 H 1.08994 * 109.47237 * 300.00251 * 3 2 1 33 33 H 1.09001 * 109.47668 * 306.68570 * 4 3 2 34 34 H 1.09002 * 109.46879 * 186.68427 * 4 3 2 35 35 H 1.08995 * 109.47453 * 184.58895 * 6 5 4 36 36 H 1.08995 * 109.46780 * 64.58698 * 6 5 4 37 37 H 0.96997 * 120.00002 * 179.97438 * 10 9 7 38 38 H 1.08994 * 110.76073 * 321.68827 * 17 15 5 39 39 H 1.08996 * 110.75664 * 84.88175 * 17 15 5 40 40 H 1.09003 * 110.48549 * 156.62482 * 18 17 15 41 41 H 1.08998 * 110.48262 * 279.13326 * 18 17 15 42 42 H 1.08999 * 109.47710 * 61.44722 * 20 19 18 43 43 H 1.09000 * 109.47350 * 181.45671 * 20 19 18 44 44 H 1.09006 * 109.46504 * 301.44729 * 20 19 18 45 45 H 1.08001 * 120.00220 * 0.02562 * 22 21 19 46 46 H 1.08002 * 120.00368 * 180.25245 * 23 22 21 47 47 H 1.08004 * 119.99255 * 179.78736 * 24 23 22 48 48 H 1.07997 * 120.00569 * 180.02562 * 25 24 23 49 49 H 1.08002 * 119.99574 * 359.97437 * 26 21 19 50 50 H 1.09006 * 110.03071 * 240.71279 * 27 19 18 51 51 H 1.09001 * 110.03288 * 119.28541 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9808 0.5995 -1.2710 6 6 3.7504 -0.8512 -1.2922 7 6 4.4249 -1.4844 -0.1027 8 1 5.0391 -0.8844 0.5525 9 6 4.2580 -2.8296 0.1493 10 7 3.5098 -3.5601 -0.6482 11 14 5.1003 -3.6160 1.6194 12 1 5.8843 -2.5875 2.3495 13 1 4.0761 -4.1943 2.5260 14 1 6.0108 -4.6916 1.1513 15 6 5.3929 0.9121 -1.5285 16 1 6.0185 0.5439 -0.7154 17 6 5.5855 2.4379 -1.7124 18 6 6.8923 2.5201 -2.5400 19 6 6.7958 1.3314 -3.5183 20 6 6.2331 1.8019 -4.8610 21 6 8.1565 0.7146 -3.7170 22 6 8.7584 0.7544 -4.9609 23 6 10.0083 0.1926 -5.1421 24 6 10.6522 -0.4174 -4.0818 25 6 10.0482 -0.4615 -2.8392 26 6 8.8001 0.1042 -2.6570 27 6 5.8425 0.3089 -2.8752 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 3.8489 0.5442 0.8250 34 1 3.9781 2.1736 0.1203 35 1 4.1625 -1.2712 -2.2097 36 1 2.6795 -1.0496 -1.2508 37 1 3.3926 -4.5066 -0.4712 38 1 4.7506 2.8688 -2.2650 39 1 5.7041 2.9313 -0.7478 40 1 6.9387 3.4618 -3.0871 41 1 7.7618 2.4135 -1.8914 42 1 6.9033 2.5431 -5.2964 43 1 6.1446 0.9509 -5.5363 44 1 5.2500 2.2471 -4.7069 45 1 8.2537 1.2278 -5.7901 46 1 10.4804 0.2273 -6.1128 47 1 11.6273 -0.8593 -4.2242 48 1 10.5514 -0.9377 -2.0107 49 1 8.3280 0.0696 -1.6862 50 1 6.3640 -0.6334 -2.7069 51 1 4.9781 0.1478 -3.5194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615113817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:37 Heat of formation + Delta-G solvation = -23.601732 kcal Electronic energy + Delta-G solvation = -28075.881524 eV Core-core repulsion = 24553.771450 eV Total energy + Delta-G solvation = -3522.110073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.03760 -38.12120 -37.08010 -35.27632 -32.43430 -31.46414 -30.72393 -29.47852 -28.83267 -27.35754 -26.43024 -25.37310 -24.49817 -22.75502 -22.14373 -21.53065 -20.80083 -19.03243 -18.56154 -16.90856 -16.29441 -15.95481 -15.45885 -15.17992 -14.93676 -14.66057 -14.49582 -14.21156 -13.95659 -13.54875 -13.44568 -13.25556 -13.10911 -12.77218 -12.38119 -12.17049 -11.87727 -11.66936 -11.59625 -11.42101 -11.34784 -11.10404 -10.96101 -10.83224 -10.73720 -10.61658 -10.57899 -10.24020 -10.20137 -10.06895 -10.01174 -9.74125 -9.57240 -9.33159 -8.87508 -8.72979 -8.42940 -8.19005 -7.03016 -5.85224 -3.89854 1.55265 1.58390 3.34084 3.42106 3.44194 3.95725 4.53189 4.57478 4.78794 4.90897 4.97012 5.09884 5.13552 5.18853 5.30481 5.46610 5.52473 5.64362 5.66082 5.69805 5.70185 5.73100 5.82808 5.87358 5.95653 6.00694 6.04327 6.07408 6.12367 6.15796 6.18960 6.19167 6.24692 6.26661 6.33895 6.35391 6.42975 6.55980 6.59554 6.68304 6.74442 6.86337 6.90543 6.93728 7.01047 7.20080 7.50020 7.79782 7.97169 8.16862 8.22827 8.48908 8.55600 9.19690 9.73283 11.20667 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011780 B = 0.004605 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.285359 B = 6079.120442 C = 7664.531649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.074 3.926 4 C 0.053 3.947 5 N -0.531 5.531 6 C 0.181 3.819 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.067 3.933 10 N -0.889 5.889 11 Si 0.879 3.121 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.091 3.909 16 H 0.044 0.956 17 C -0.118 4.118 18 C -0.107 4.107 19 C -0.028 4.028 20 C -0.136 4.136 21 C -0.057 4.057 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.119 4.119 26 C -0.110 4.110 27 C -0.095 4.095 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.027 0.973 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.062 0.938 37 H 0.257 0.743 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.123 0.877 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.125 0.875 50 H 0.067 0.933 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.138 12.056 -5.888 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C -0.004 4.004 4 C -0.075 4.075 5 N -0.255 5.255 6 C 0.056 3.944 7 C -0.569 4.569 8 H 0.068 0.932 9 C -0.134 4.134 10 N -0.529 5.529 11 Si 0.708 3.292 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.213 1.213 15 C -0.018 4.018 16 H 0.062 0.938 17 C -0.156 4.156 18 C -0.144 4.144 19 C -0.029 4.029 20 C -0.193 4.193 21 C -0.057 4.057 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.137 4.137 26 C -0.128 4.128 27 C -0.133 4.133 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.141 0.859 46 H 0.134 0.866 47 H 0.133 0.867 48 H 0.136 0.864 49 H 0.143 0.857 50 H 0.085 0.915 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.897 11.905 -6.301 14.704 hybrid contribution 0.774 -0.888 1.605 1.990 sum 6.670 11.018 -4.696 13.709 Atomic orbital electron populations 1.22631 0.83555 1.02039 0.98351 1.88342 1.17291 1.26543 1.94783 1.22476 0.94700 0.85152 0.98054 1.22028 0.92646 0.98483 0.94390 1.62699 1.15685 1.16729 1.30382 1.19977 0.99076 0.79926 0.95392 1.21644 1.29566 0.94012 1.11696 0.93184 1.24848 0.95200 0.97424 0.95950 1.69951 1.38899 1.06571 1.37460 0.86757 0.79452 0.79444 0.83593 1.20125 1.21167 1.21283 1.22225 0.90788 0.92692 0.96124 0.93784 1.22604 0.96860 0.97291 0.98887 1.22430 0.98264 0.96688 0.97068 1.20188 0.91288 0.95427 0.95957 1.21942 1.00762 1.00665 0.95922 1.19968 0.95545 0.97017 0.93182 1.21172 0.95359 1.00622 0.97165 1.21077 0.95532 0.99064 0.98562 1.21064 0.99967 1.00654 0.93415 1.21134 0.95652 0.99693 0.97262 1.21124 0.94767 0.97505 0.99368 1.22255 0.97854 0.96926 0.96239 0.95091 0.90246 0.95482 0.94916 0.93920 0.91996 0.92037 0.96043 0.92059 0.93304 0.90968 0.92562 0.92001 0.91807 0.93026 0.92533 0.91964 0.85911 0.86641 0.86700 0.86396 0.85737 0.91459 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.43 8.00 -35.23 -0.28 -7.71 16 3 C 0.07 1.32 6.26 37.16 0.23 1.55 16 4 C 0.05 1.02 5.22 -3.83 -0.02 1.00 16 5 N -0.53 -11.00 4.46 -226.11 -1.01 -12.01 16 6 C 0.18 4.62 4.54 -4.98 -0.02 4.60 16 7 C -0.53 -14.53 7.42 -34.44 -0.26 -14.78 16 8 H 0.05 1.37 6.04 -52.48 -0.32 1.06 16 9 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 10 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 11 Si 0.88 21.94 29.54 -169.99 -5.02 16.92 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 C 0.09 1.67 2.25 -66.05 -0.15 1.52 16 16 H 0.04 0.91 7.17 -51.93 -0.37 0.54 16 17 C -0.12 -1.74 5.49 -24.73 -0.14 -1.87 16 18 C -0.11 -1.41 5.83 -25.07 -0.15 -1.56 16 19 C -0.03 -0.40 0.78 -154.54 -0.12 -0.52 16 20 C -0.14 -1.68 6.81 37.16 0.25 -1.43 16 21 C -0.06 -0.82 4.69 -104.62 -0.49 -1.31 16 22 C -0.13 -1.62 9.03 -39.58 -0.36 -1.97 16 23 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 24 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 25 C -0.12 -1.61 10.05 -39.59 -0.40 -2.01 16 26 C -0.11 -1.63 8.06 -39.59 -0.32 -1.95 16 27 C -0.09 -1.69 4.03 -25.61 -0.10 -1.79 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.38 5.87 -51.93 -0.30 1.08 16 34 H 0.06 1.01 6.43 -51.93 -0.33 0.68 16 35 H 0.02 0.59 6.47 -51.93 -0.34 0.25 16 36 H 0.06 1.73 5.79 -51.93 -0.30 1.43 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.78 7.52 -51.93 -0.39 0.39 16 40 H 0.06 0.73 7.84 -51.93 -0.41 0.32 16 41 H 0.06 0.85 7.35 -51.93 -0.38 0.47 16 42 H 0.05 0.55 7.27 -51.93 -0.38 0.17 16 43 H 0.06 0.70 7.83 -51.93 -0.41 0.30 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.12 1.38 5.97 -52.49 -0.31 1.06 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 47 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 48 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 49 H 0.12 1.95 7.83 -52.49 -0.41 1.53 16 50 H 0.07 1.35 7.01 -51.93 -0.36 0.98 16 51 H 0.07 1.43 7.05 -51.93 -0.37 1.07 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -30.41 386.49 -10.31 -40.72 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.74 Total: 3.10 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -1.81 Total: -20.99 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.27 Total: -37.86 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.28 Total: -7.71 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.41 -10.31 -40.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615113817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.115 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds