Wall clock time and date at job start Tue Mar 31 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99545 * 2 1 4 4 C 1.53008 * 109.47121 * 184.96630 * 3 2 1 5 5 N 1.46895 * 109.46987 * 68.14207 * 4 3 2 6 6 C 1.46903 * 111.00146 * 283.92484 * 5 4 3 7 7 C 1.50702 * 109.46851 * 160.72690 * 6 5 4 8 8 H 1.07993 * 120.00060 * 353.69817 * 7 6 5 9 9 C 1.37880 * 119.99597 * 173.70356 * 7 6 5 10 10 N 1.31510 * 120.00296 * 4.99455 * 9 7 6 11 11 Si 1.86794 * 119.99693 * 184.99987 * 9 7 6 12 12 H 1.48507 * 109.47480 * 65.00532 * 11 9 7 13 13 H 1.48499 * 109.47140 * 185.00281 * 11 9 7 14 14 H 1.48497 * 109.47449 * 305.00559 * 11 9 7 15 15 C 1.46898 * 110.99590 * 159.97188 * 5 4 3 16 16 H 1.08995 * 110.44004 * 327.89674 * 15 5 4 17 17 C 1.54886 * 110.59941 * 90.51789 * 15 5 4 18 18 C 1.54895 * 102.75077 * 156.67518 * 17 15 5 19 19 C 1.54269 * 104.19352 * 322.05418 * 18 17 15 20 20 C 1.52999 * 110.03275 * 264.27972 * 19 18 17 21 21 C 1.50698 * 110.03093 * 142.89263 * 19 18 17 22 22 C 1.38244 * 119.99916 * 114.80522 * 21 19 18 23 23 C 1.38224 * 119.99925 * 179.76942 * 22 21 19 24 24 C 1.38233 * 120.00284 * 0.48059 * 23 22 21 25 25 C 1.38236 * 120.00017 * 359.79252 * 24 23 22 26 26 C 1.38235 * 119.99864 * 359.95622 * 25 24 23 27 27 C 1.53876 * 106.59829 * 23.61248 * 19 18 17 28 28 H 1.09000 * 109.47239 * 304.98527 * 1 2 3 29 29 H 1.08993 * 109.46998 * 64.98653 * 1 2 3 30 30 H 1.09004 * 109.46478 * 184.98798 * 1 2 3 31 31 H 1.09008 * 109.47461 * 64.96861 * 3 2 1 32 32 H 1.09002 * 109.47700 * 304.96380 * 3 2 1 33 33 H 1.09003 * 109.46583 * 308.13939 * 4 3 2 34 34 H 1.08996 * 109.47003 * 188.14539 * 4 3 2 35 35 H 1.09001 * 109.47166 * 280.72723 * 6 5 4 36 36 H 1.09000 * 109.46727 * 40.72531 * 6 5 4 37 37 H 0.97000 * 120.00403 * 179.97438 * 10 9 7 38 38 H 1.08998 * 110.76082 * 38.35848 * 17 15 5 39 39 H 1.09002 * 110.75873 * 274.98713 * 17 15 5 40 40 H 1.08997 * 110.48397 * 203.38021 * 18 17 15 41 41 H 1.08996 * 110.48748 * 80.73459 * 18 17 15 42 42 H 1.08996 * 109.47751 * 58.54783 * 20 19 18 43 43 H 1.08999 * 109.46735 * 178.54894 * 20 19 18 44 44 H 1.08998 * 109.46853 * 298.54371 * 20 19 18 45 45 H 1.08003 * 119.99290 * 359.97438 * 22 21 19 46 46 H 1.08010 * 120.00115 * 180.25184 * 23 22 21 47 47 H 1.08004 * 120.00390 * 179.77434 * 24 23 22 48 48 H 1.07997 * 120.00111 * 179.97438 * 25 24 23 49 49 H 1.07994 * 119.99998 * 180.02562 * 26 25 24 50 50 H 1.08996 * 110.03231 * 119.28608 * 27 19 18 51 51 H 1.09003 * 110.03030 * 240.66912 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1870 -0.1249 5 7 3.8741 0.6806 -1.4603 6 6 3.6171 -0.7625 -1.5583 7 6 3.5183 -1.1576 -3.0093 8 1 3.5328 -0.3990 -3.7777 9 6 3.4092 -2.4877 -3.3556 10 7 3.2925 -3.4036 -2.4191 11 14 3.4274 -2.9888 -5.1549 12 1 4.7525 -2.6695 -5.7444 13 1 3.1755 -4.4482 -5.2650 14 1 2.3688 -2.2473 -5.8861 15 6 5.2697 0.9908 -1.7978 16 1 5.5724 1.9317 -1.3383 17 6 6.2071 -0.1577 -1.3493 18 6 7.4366 0.0238 -2.2738 19 6 6.8316 0.4388 -3.6308 20 6 6.6728 -0.7882 -4.5310 21 6 7.7163 1.4587 -4.3002 22 6 8.3554 1.1475 -5.4858 23 6 9.1631 2.0847 -6.1023 24 6 9.3397 3.3297 -5.5280 25 6 8.7051 3.6389 -4.3395 26 6 7.8933 2.7035 -3.7257 27 6 5.4539 1.0537 -3.3283 28 1 -0.3634 0.5892 0.8420 29 1 -0.3633 0.4345 -0.9312 30 1 -0.3632 -1.0238 0.0894 31 1 1.7607 1.8143 0.9312 32 1 1.6200 1.8770 -0.8422 33 1 3.9046 0.4980 0.6324 34 1 3.9844 2.1673 0.0199 35 1 4.4336 -1.3098 -1.0875 36 1 2.6812 -0.9999 -1.0525 37 1 3.2154 -4.3394 -2.6627 38 1 5.7378 -1.1271 -1.5167 39 1 6.4897 -0.0396 -0.3032 40 1 7.9829 -0.9144 -2.3706 41 1 8.0892 0.8085 -1.8910 42 1 6.0328 -1.5200 -4.0383 43 1 6.2212 -0.4888 -5.4768 44 1 7.6514 -1.2297 -4.7193 45 1 8.2209 0.1733 -5.9321 46 1 9.6592 1.8430 -7.0307 47 1 9.9737 4.0607 -6.0078 48 1 8.8434 4.6114 -3.8907 49 1 7.3972 2.9453 -2.7974 50 1 5.4252 2.0897 -3.6656 51 1 4.6714 0.4783 -3.8231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615113818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:39 Heat of formation + Delta-G solvation = -1.722174 kcal Electronic energy + Delta-G solvation = -28472.534543 eV Core-core repulsion = 24951.373239 eV Total energy + Delta-G solvation = -3521.161305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.98239 -38.25383 -37.17582 -35.06400 -32.49371 -31.43447 -30.71156 -29.24492 -28.51567 -27.72832 -26.54086 -25.38088 -24.40983 -22.42547 -22.15377 -21.68615 -21.05635 -18.59547 -18.52668 -16.83324 -16.50235 -15.81717 -15.68789 -15.08989 -14.84800 -14.67616 -14.51634 -14.32874 -13.94510 -13.61073 -13.30760 -13.12883 -12.76530 -12.67921 -12.54601 -12.03632 -11.83640 -11.80193 -11.46184 -11.35594 -11.24926 -10.98072 -10.92547 -10.82491 -10.66835 -10.61373 -10.50194 -10.29493 -10.10614 -10.08255 -9.83883 -9.48257 -9.31347 -8.92571 -8.76365 -8.70917 -8.35588 -8.10171 -7.02054 -5.88674 -3.84823 1.58882 1.59741 3.36757 3.42588 3.45072 3.99156 4.38474 4.50352 4.91405 4.99563 5.05064 5.13802 5.29314 5.36034 5.39339 5.46268 5.57417 5.68072 5.72454 5.77106 5.77377 5.81691 5.88162 5.94972 6.00026 6.01847 6.09112 6.12416 6.13402 6.19714 6.26150 6.29518 6.39045 6.41806 6.44561 6.57556 6.64094 6.65601 6.67469 6.73021 6.89064 6.99553 7.02637 7.15918 7.20842 7.28076 7.60649 7.75196 7.79539 8.05512 8.35760 8.50484 8.72829 9.21050 9.74258 11.21424 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.004948 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.088398 B = 5657.252855 C = 7248.919191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.070 3.930 4 C 0.056 3.944 5 N -0.528 5.528 6 C 0.166 3.834 7 C -0.489 4.489 8 H 0.068 0.932 9 C 0.058 3.942 10 N -0.896 5.896 11 Si 0.874 3.126 12 H -0.271 1.271 13 H -0.292 1.292 14 H -0.279 1.279 15 C 0.097 3.903 16 H 0.053 0.947 17 C -0.167 4.167 18 C -0.101 4.101 19 C -0.022 4.022 20 C -0.141 4.141 21 C -0.051 4.051 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.137 4.137 25 C -0.123 4.123 26 C -0.115 4.115 27 C -0.116 4.116 28 H 0.027 0.973 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.011 0.989 36 H 0.064 0.936 37 H 0.258 0.742 38 H 0.114 0.886 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.042 0.958 45 H 0.125 0.875 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.120 0.880 50 H 0.046 0.954 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 11.031 0.216 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.284 6.284 3 C -0.007 4.007 4 C -0.073 4.073 5 N -0.251 5.251 6 C 0.042 3.958 7 C -0.528 4.528 8 H 0.085 0.915 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.702 3.298 12 H -0.197 1.197 13 H -0.218 1.218 14 H -0.205 1.205 15 C -0.012 4.012 16 H 0.071 0.929 17 C -0.205 4.205 18 C -0.139 4.139 19 C -0.022 4.022 20 C -0.198 4.198 21 C -0.051 4.051 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.155 4.155 25 C -0.141 4.141 26 C -0.133 4.133 27 C -0.153 4.153 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.132 0.868 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.143 0.857 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.138 0.862 50 H 0.065 0.935 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.308 10.909 -0.098 12.602 hybrid contribution 0.410 -0.444 -0.472 0.767 sum 6.718 10.465 -0.569 12.449 Atomic orbital electron populations 1.22627 0.82676 1.02045 0.98892 1.88134 1.18358 1.27009 1.94899 1.22507 0.94417 0.85274 0.98500 1.22062 0.93589 0.99017 0.92611 1.62324 1.19083 1.20700 1.23035 1.20424 0.97972 0.79816 0.97563 1.21249 1.48121 0.91139 0.92258 0.91466 1.24875 0.96244 0.96808 0.96334 1.69960 1.51007 1.00808 1.31864 0.86980 0.78840 0.77318 0.86684 1.19688 1.21760 1.20470 1.22298 0.87868 0.95435 0.95596 0.92862 1.23414 0.96014 1.04095 0.97008 1.22339 0.97330 1.00066 0.94161 1.20116 0.94274 0.93218 0.94605 1.22058 1.00863 0.97771 0.99145 1.20172 0.95903 0.94673 0.94342 1.21275 0.97345 0.99809 0.95799 1.21100 0.99198 0.94011 0.99751 1.21026 1.00980 0.96940 0.96577 1.21077 0.97878 0.99136 0.96001 1.21031 0.98751 0.93392 1.00165 1.22767 0.96249 0.99830 0.96452 0.95401 0.94419 0.90189 0.94630 0.92943 0.94906 0.91438 0.97145 0.91893 0.93268 0.86781 0.93602 0.92279 0.92756 0.89623 0.93230 0.93943 0.85720 0.86683 0.86826 0.86657 0.86178 0.93547 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.37 -7.19 7.80 -35.23 -0.27 -7.46 16 3 C 0.07 1.18 6.24 37.16 0.23 1.41 16 4 C 0.06 0.99 5.53 -3.82 -0.02 0.97 16 5 N -0.53 -10.80 4.34 -226.09 -0.98 -11.78 16 6 C 0.17 4.07 4.06 -4.97 -0.02 4.05 16 7 C -0.49 -12.69 7.11 -34.44 -0.24 -12.94 16 8 H 0.07 1.76 5.20 -52.49 -0.27 1.48 16 9 C 0.06 1.56 5.37 -17.82 -0.10 1.46 16 10 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 11 Si 0.87 20.91 29.03 -169.99 -4.93 15.97 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.10 1.78 2.90 -66.05 -0.19 1.59 16 16 H 0.05 0.89 7.50 -51.93 -0.39 0.50 16 17 C -0.17 -3.10 5.80 -24.74 -0.14 -3.25 16 18 C -0.10 -1.68 5.83 -25.07 -0.15 -1.82 16 19 C -0.02 -0.37 0.78 -154.54 -0.12 -0.49 16 20 C -0.14 -2.56 6.82 37.16 0.25 -2.31 16 21 C -0.05 -0.78 4.68 -104.62 -0.49 -1.27 16 22 C -0.12 -1.80 9.03 -39.58 -0.36 -2.16 16 23 C -0.12 -1.56 10.05 -39.59 -0.40 -1.95 16 24 C -0.14 -1.65 10.05 -39.58 -0.40 -2.05 16 25 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 26 C -0.12 -1.63 8.06 -39.58 -0.32 -1.95 16 27 C -0.12 -2.14 5.10 -25.61 -0.13 -2.27 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.03 0.61 7.99 -51.93 -0.42 0.19 16 34 H 0.07 1.01 7.55 -51.93 -0.39 0.62 16 35 H 0.01 0.29 4.94 -51.93 -0.26 0.03 16 36 H 0.06 1.71 4.93 -51.93 -0.26 1.45 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.11 2.57 4.91 -51.93 -0.26 2.31 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.98 7.84 -51.93 -0.41 0.57 16 41 H 0.05 0.83 7.34 -51.93 -0.38 0.45 16 42 H 0.08 1.82 6.83 -51.93 -0.35 1.46 16 43 H 0.05 0.89 7.85 -51.93 -0.41 0.48 16 44 H 0.04 0.68 7.24 -51.93 -0.38 0.31 16 45 H 0.12 1.74 5.97 -52.48 -0.31 1.43 16 46 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 47 H 0.11 1.09 8.06 -52.48 -0.42 0.66 16 48 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 49 H 0.12 1.63 7.82 -52.49 -0.41 1.22 16 50 H 0.05 0.81 7.01 -51.93 -0.36 0.45 16 51 H 0.12 2.55 3.61 -51.93 -0.19 2.37 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -28.50 380.10 -9.98 -38.48 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.38 Total: 7.32 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -1.88 Total: -23.25 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.24 Total: -36.79 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.27 Total: -7.46 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.93 Total: 15.97 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.50 -9.98 -38.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615113818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.755 kcal (2) G-P(sol) polarization free energy of solvation -28.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds