Wall clock time and date at job start Tue Mar 31 2020 11:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99928 * 2 1 4 4 C 1.52999 * 109.46734 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47630 * 67.51809 * 4 3 2 6 6 C 1.46896 * 110.99619 * 289.80918 * 5 4 3 7 7 C 1.50703 * 109.47360 * 299.60220 * 6 5 4 8 8 H 1.08000 * 119.99573 * 354.92521 * 7 6 5 9 9 C 1.37876 * 119.99991 * 174.92582 * 7 6 5 10 10 N 1.31518 * 120.00011 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00106 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47278 * 89.99705 * 11 9 7 13 13 H 1.48504 * 109.47343 * 209.99601 * 11 9 7 14 14 H 1.48502 * 109.47210 * 329.99624 * 11 9 7 15 15 C 1.46902 * 110.99858 * 53.76211 * 5 4 3 16 16 H 1.09009 * 110.81376 * 298.12221 * 15 5 4 17 17 C 1.54881 * 110.75696 * 61.45541 * 15 5 4 18 18 C 1.54270 * 104.31383 * 156.32388 * 17 15 5 19 19 C 1.53878 * 106.59501 * 336.32437 * 18 17 15 20 20 C 1.53002 * 110.02989 * 119.33605 * 19 18 17 21 21 C 1.50697 * 110.03265 * 240.71307 * 19 18 17 22 22 C 1.38241 * 119.99887 * 56.51549 * 21 19 18 23 23 C 1.38234 * 119.99863 * 179.78452 * 22 21 19 24 24 C 1.38239 * 120.00144 * 0.45064 * 23 22 21 25 25 C 1.38236 * 119.99506 * 359.80548 * 24 23 22 26 26 C 1.38225 * 120.00495 * 359.97438 * 25 24 23 27 27 C 1.54259 * 106.59902 * 359.97438 * 19 18 17 28 28 H 1.08995 * 109.46930 * 59.99409 * 1 2 3 29 29 H 1.08995 * 109.46951 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46541 * 299.99646 * 1 2 3 31 31 H 1.08993 * 109.46925 * 60.00387 * 3 2 1 32 32 H 1.08998 * 109.47368 * 300.00335 * 3 2 1 33 33 H 1.08994 * 109.47501 * 307.51439 * 4 3 2 34 34 H 1.09002 * 109.46818 * 187.51413 * 4 3 2 35 35 H 1.09000 * 109.47456 * 59.60293 * 6 5 4 36 36 H 1.09000 * 109.46919 * 179.59973 * 6 5 4 37 37 H 0.96993 * 120.00015 * 180.02562 * 10 9 7 38 38 H 1.09005 * 110.48801 * 37.57932 * 17 15 5 39 39 H 1.09000 * 110.49278 * 275.06568 * 17 15 5 40 40 H 1.08998 * 110.03504 * 95.60857 * 18 17 15 41 41 H 1.09002 * 110.03347 * 217.04042 * 18 17 15 42 42 H 1.08994 * 109.47347 * 61.45312 * 20 19 18 43 43 H 1.09004 * 109.46697 * 181.45412 * 20 19 18 44 44 H 1.09005 * 109.46857 * 301.44869 * 20 19 18 45 45 H 1.07997 * 120.00144 * 0.02562 * 22 21 19 46 46 H 1.08004 * 120.00047 * 180.27772 * 23 22 21 47 47 H 1.08001 * 119.99880 * 179.83218 * 24 23 22 48 48 H 1.08004 * 119.99376 * 180.02562 * 25 24 23 49 49 H 1.07999 * 120.00139 * 180.02562 * 26 25 24 50 50 H 1.09011 * 110.48664 * 142.28672 * 27 19 18 51 51 H 1.08996 * 110.48972 * 264.79400 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9813 0.6182 -1.2806 6 6 3.6056 -0.7978 -1.3890 7 6 4.2536 -1.5764 -0.2733 8 1 4.9463 -1.0869 0.3953 9 6 3.9623 -2.9136 -0.1061 10 7 4.5283 -3.5932 0.8673 11 14 2.7649 -3.7604 -1.2630 12 1 3.5075 -4.3220 -2.4200 13 1 2.0706 -4.8568 -0.5412 14 1 1.7646 -2.7756 -1.7477 15 6 3.4515 1.3916 -2.4116 16 1 2.3618 1.3635 -2.4235 17 6 3.9624 2.8530 -2.3646 18 6 3.8656 3.3381 -3.8258 19 6 3.9087 2.0797 -4.7104 20 6 2.6221 1.9721 -5.5315 21 6 5.1030 2.1343 -5.6278 22 6 6.3731 2.2768 -5.1011 23 6 7.4691 2.3224 -5.9424 24 6 7.2941 2.2347 -7.3108 25 6 6.0235 2.0975 -7.8377 26 6 4.9280 2.0474 -6.9963 27 6 4.0308 0.8741 -3.7559 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8486 0.5319 0.8142 34 1 3.9782 2.1715 0.1337 35 1 2.5221 -0.8928 -1.3167 36 1 3.9414 -1.1903 -2.3488 37 1 4.3236 -4.5341 0.9846 38 1 4.9959 2.8849 -2.0197 39 1 3.3268 3.4588 -1.7187 40 1 2.9278 3.8715 -3.9808 41 1 4.7086 3.9882 -4.0600 42 1 2.5342 2.8402 -6.1846 43 1 2.6512 1.0648 -6.1349 44 1 1.7645 1.9343 -4.8597 45 1 6.5096 2.3487 -4.0322 46 1 8.4618 2.4292 -5.5307 47 1 8.1501 2.2731 -7.9682 48 1 5.8868 2.0286 -8.9068 49 1 3.9353 1.9398 -7.4079 50 1 3.4428 0.0338 -4.1255 51 1 5.0751 0.5851 -3.6380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615113819.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:42 Heat of formation + Delta-G solvation = -15.722303 kcal Electronic energy + Delta-G solvation = -28215.366437 eV Core-core repulsion = 24693.598041 eV Total energy + Delta-G solvation = -3521.768396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.24430 -38.54560 -37.20976 -35.34110 -32.48964 -31.59447 -30.82368 -29.61588 -29.02176 -28.04006 -26.66709 -25.50890 -24.74139 -22.56313 -22.36125 -21.93933 -20.84032 -18.97015 -18.65680 -17.09950 -16.67542 -16.14028 -15.92604 -15.21542 -15.16183 -14.73767 -14.51678 -14.23293 -14.02751 -13.89549 -13.53108 -13.39914 -13.27408 -13.12902 -12.44843 -12.23991 -12.06965 -11.97638 -11.86980 -11.62588 -11.57046 -11.37928 -11.15951 -11.12276 -10.85675 -10.69498 -10.58759 -10.45988 -10.34176 -10.22155 -10.16995 -9.90476 -9.64668 -9.07173 -9.02873 -8.86213 -8.57601 -8.36750 -7.14838 -5.87742 -3.80792 1.41463 1.45229 3.39958 3.46449 3.52160 3.81768 4.29954 4.59200 4.59955 4.67648 4.78891 4.95364 5.01683 5.11557 5.14058 5.25455 5.42779 5.45449 5.48295 5.49737 5.53572 5.54599 5.61022 5.65326 5.68887 5.75612 5.78914 5.86789 5.94387 5.96932 5.98602 6.01595 6.05096 6.08176 6.14196 6.16090 6.21600 6.32808 6.42124 6.52900 6.54858 6.59724 6.64543 6.76724 6.84460 7.06359 7.13723 7.45685 7.71459 7.80043 8.07247 8.23450 8.84310 9.19311 9.76885 11.26105 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.004221 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.300021 B = 6632.176849 C = 7448.344591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.025 3.975 4 C 0.062 3.938 5 N -0.514 5.514 6 C 0.149 3.851 7 C -0.490 4.490 8 H 0.076 0.924 9 C 0.070 3.930 10 N -0.909 5.909 11 Si 0.870 3.130 12 H -0.282 1.282 13 H -0.291 1.291 14 H -0.264 1.264 15 C 0.075 3.925 16 H 0.040 0.960 17 C -0.116 4.116 18 C -0.108 4.108 19 C -0.029 4.029 20 C -0.139 4.139 21 C -0.058 4.058 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.098 4.098 28 H 0.029 0.971 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.123 0.877 50 H 0.062 0.938 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 15.648 -13.036 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.269 6.269 3 C -0.054 4.054 4 C -0.067 4.067 5 N -0.236 5.236 6 C 0.024 3.976 7 C -0.528 4.528 8 H 0.094 0.906 9 C -0.130 4.130 10 N -0.550 5.550 11 Si 0.699 3.301 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.188 1.188 15 C -0.034 4.034 16 H 0.058 0.942 17 C -0.154 4.154 18 C -0.146 4.146 19 C -0.029 4.029 20 C -0.196 4.196 21 C -0.058 4.058 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.149 4.149 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.136 4.136 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.144 0.856 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.141 0.859 50 H 0.080 0.920 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.380 15.317 -12.977 20.216 hybrid contribution -1.775 -0.484 -0.574 1.927 sum -4.155 14.834 -13.551 20.517 Atomic orbital electron populations 1.22693 0.83663 1.02124 0.98664 1.88392 1.17397 1.26448 1.94666 1.23382 0.97669 0.85568 0.98762 1.22236 0.89146 1.00019 0.95310 1.62231 1.57700 1.04280 0.99436 1.20456 0.96504 0.83575 0.97102 1.20964 1.25114 0.93951 1.12805 0.90644 1.24792 0.95789 0.97315 0.95138 1.69901 1.44479 1.08790 1.31796 0.86923 0.82484 0.79376 0.81357 1.20784 1.21710 1.18818 1.22648 0.96052 0.92841 0.91823 0.94210 1.22415 1.02025 0.95622 0.95307 1.22256 1.01586 0.96047 0.94703 1.20152 0.92200 0.96484 0.94061 1.21979 0.96612 1.01392 0.99636 1.19897 0.94398 0.97991 0.93557 1.21109 0.91957 0.99458 1.00278 1.21147 0.98752 1.00207 0.93585 1.21094 0.97052 1.01451 0.95351 1.21091 0.92869 1.00766 0.99399 1.21175 0.98951 1.01036 0.93138 1.22568 1.02703 0.95379 0.92963 0.95221 0.90246 0.94869 0.94415 0.94128 0.88109 0.91186 0.95412 0.96717 0.93088 0.90574 0.92447 0.91942 0.91649 0.92653 0.92413 0.92320 0.85597 0.86256 0.86583 0.86564 0.85938 0.91958 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.35 -7.08 7.62 -35.23 -0.27 -7.35 16 3 C 0.02 0.42 5.70 37.16 0.21 0.63 16 4 C 0.06 1.15 5.42 -3.82 -0.02 1.13 16 5 N -0.51 -10.34 4.64 -225.46 -1.05 -11.39 16 6 C 0.15 3.62 3.23 -4.98 -0.02 3.60 16 7 C -0.49 -13.99 8.76 -34.44 -0.30 -14.29 16 8 H 0.08 2.34 7.24 -52.49 -0.38 1.96 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.91 -28.52 13.96 55.43 0.77 -27.74 16 11 Si 0.87 22.39 27.57 -169.99 -4.69 17.70 16 12 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 H -0.26 -6.55 6.40 56.52 0.36 -6.19 16 15 C 0.08 1.23 1.93 -65.52 -0.13 1.11 16 16 H 0.04 0.68 6.25 -51.92 -0.32 0.36 16 17 C -0.12 -1.54 5.28 -25.07 -0.13 -1.67 16 18 C -0.11 -1.26 5.83 -25.61 -0.15 -1.41 16 19 C -0.03 -0.36 0.78 -154.54 -0.12 -0.48 16 20 C -0.14 -1.54 6.80 37.16 0.25 -1.29 16 21 C -0.06 -0.74 4.68 -104.62 -0.49 -1.23 16 22 C -0.11 -1.40 8.03 -39.58 -0.32 -1.72 16 23 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 24 C -0.13 -1.42 10.05 -39.58 -0.40 -1.81 16 25 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 26 C -0.13 -1.45 9.01 -39.59 -0.36 -1.81 16 27 C -0.10 -1.56 4.25 -24.87 -0.11 -1.66 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.64 5.94 -51.93 -0.31 0.33 16 33 H 0.10 2.22 6.33 -51.93 -0.33 1.89 16 34 H 0.07 1.11 7.40 -51.93 -0.38 0.72 16 35 H 0.03 0.71 4.01 -51.93 -0.21 0.50 16 36 H 0.01 0.37 6.56 -51.93 -0.34 0.03 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 41 H 0.06 0.74 7.19 -51.93 -0.37 0.36 16 42 H 0.05 0.53 7.63 -51.93 -0.40 0.14 16 43 H 0.06 0.64 7.47 -51.93 -0.39 0.25 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.13 1.62 7.88 -52.49 -0.41 1.20 16 46 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 49 H 0.12 1.24 5.95 -52.49 -0.31 0.93 16 50 H 0.06 1.05 7.57 -51.92 -0.39 0.66 16 51 H 0.08 1.44 7.10 -51.93 -0.37 1.07 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -31.89 382.36 -10.04 -41.93 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.72 Total: 2.02 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -1.85 Total: -20.93 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.27 Total: -39.13 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.27 Total: -7.35 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.69 Total: 17.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.89 -10.04 -41.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615113819.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.209 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds