Wall clock time and date at job start Tue Mar 31 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99928 * 2 1 4 4 C 1.52999 * 109.46734 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47630 * 67.51809 * 4 3 2 6 6 C 1.46896 * 110.99619 * 289.80918 * 5 4 3 7 7 C 1.50703 * 109.47360 * 299.60220 * 6 5 4 8 8 H 1.08000 * 119.99573 * 354.92521 * 7 6 5 9 9 C 1.37876 * 119.99991 * 174.92582 * 7 6 5 10 10 N 1.31518 * 120.00011 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00106 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47278 * 89.99705 * 11 9 7 13 13 H 1.48504 * 109.47343 * 209.99601 * 11 9 7 14 14 H 1.48502 * 109.47210 * 329.99624 * 11 9 7 15 15 C 1.46902 * 110.99858 * 53.76211 * 5 4 3 16 16 H 1.09009 * 110.81376 * 298.12221 * 15 5 4 17 17 C 1.54881 * 110.75696 * 61.45541 * 15 5 4 18 18 C 1.54270 * 104.31383 * 156.32388 * 17 15 5 19 19 C 1.53878 * 106.59501 * 336.32437 * 18 17 15 20 20 C 1.53002 * 110.02989 * 119.33605 * 19 18 17 21 21 C 1.50697 * 110.03265 * 240.71307 * 19 18 17 22 22 C 1.38241 * 119.99887 * 56.51549 * 21 19 18 23 23 C 1.38234 * 119.99863 * 179.78452 * 22 21 19 24 24 C 1.38239 * 120.00144 * 0.45064 * 23 22 21 25 25 C 1.38236 * 119.99506 * 359.80548 * 24 23 22 26 26 C 1.38225 * 120.00495 * 359.97438 * 25 24 23 27 27 C 1.54259 * 106.59902 * 359.97438 * 19 18 17 28 28 H 1.08995 * 109.46930 * 59.99409 * 1 2 3 29 29 H 1.08995 * 109.46951 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46541 * 299.99646 * 1 2 3 31 31 H 1.08993 * 109.46925 * 60.00387 * 3 2 1 32 32 H 1.08998 * 109.47368 * 300.00335 * 3 2 1 33 33 H 1.08994 * 109.47501 * 307.51439 * 4 3 2 34 34 H 1.09002 * 109.46818 * 187.51413 * 4 3 2 35 35 H 1.09000 * 109.47456 * 59.60293 * 6 5 4 36 36 H 1.09000 * 109.46919 * 179.59973 * 6 5 4 37 37 H 0.96993 * 120.00015 * 180.02562 * 10 9 7 38 38 H 1.09005 * 110.48801 * 37.57932 * 17 15 5 39 39 H 1.09000 * 110.49278 * 275.06568 * 17 15 5 40 40 H 1.08998 * 110.03504 * 95.60857 * 18 17 15 41 41 H 1.09002 * 110.03347 * 217.04042 * 18 17 15 42 42 H 1.08994 * 109.47347 * 61.45312 * 20 19 18 43 43 H 1.09004 * 109.46697 * 181.45412 * 20 19 18 44 44 H 1.09005 * 109.46857 * 301.44869 * 20 19 18 45 45 H 1.07997 * 120.00144 * 0.02562 * 22 21 19 46 46 H 1.08004 * 120.00047 * 180.27772 * 23 22 21 47 47 H 1.08001 * 119.99880 * 179.83218 * 24 23 22 48 48 H 1.08004 * 119.99376 * 180.02562 * 25 24 23 49 49 H 1.07999 * 120.00139 * 180.02562 * 26 25 24 50 50 H 1.09011 * 110.48664 * 142.28672 * 27 19 18 51 51 H 1.08996 * 110.48972 * 264.79400 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9813 0.6182 -1.2806 6 6 3.6056 -0.7978 -1.3890 7 6 4.2536 -1.5764 -0.2733 8 1 4.9463 -1.0869 0.3953 9 6 3.9623 -2.9136 -0.1061 10 7 4.5283 -3.5932 0.8673 11 14 2.7649 -3.7604 -1.2630 12 1 3.5075 -4.3220 -2.4200 13 1 2.0706 -4.8568 -0.5412 14 1 1.7646 -2.7756 -1.7477 15 6 3.4515 1.3916 -2.4116 16 1 2.3618 1.3635 -2.4235 17 6 3.9624 2.8530 -2.3646 18 6 3.8656 3.3381 -3.8258 19 6 3.9087 2.0797 -4.7104 20 6 2.6221 1.9721 -5.5315 21 6 5.1030 2.1343 -5.6278 22 6 6.3731 2.2768 -5.1011 23 6 7.4691 2.3224 -5.9424 24 6 7.2941 2.2347 -7.3108 25 6 6.0235 2.0975 -7.8377 26 6 4.9280 2.0474 -6.9963 27 6 4.0308 0.8741 -3.7559 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8486 0.5319 0.8142 34 1 3.9782 2.1715 0.1337 35 1 2.5221 -0.8928 -1.3167 36 1 3.9414 -1.1903 -2.3488 37 1 4.3236 -4.5341 0.9846 38 1 4.9959 2.8849 -2.0197 39 1 3.3268 3.4588 -1.7187 40 1 2.9278 3.8715 -3.9808 41 1 4.7086 3.9882 -4.0600 42 1 2.5342 2.8402 -6.1846 43 1 2.6512 1.0648 -6.1349 44 1 1.7645 1.9343 -4.8597 45 1 6.5096 2.3487 -4.0322 46 1 8.4618 2.4292 -5.5307 47 1 8.1501 2.2731 -7.9682 48 1 5.8868 2.0286 -8.9068 49 1 3.9353 1.9398 -7.4079 50 1 3.4428 0.0338 -4.1255 51 1 5.0751 0.5851 -3.6380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615113819.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:41 Heat of formation + Delta-G solvation = -34.386151 kcal Electronic energy + Delta-G solvation = -28216.175762 eV Core-core repulsion = 24693.598041 eV Total energy + Delta-G solvation = -3522.577721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28613 -39.80682 -38.38431 -36.75457 -34.56989 -32.76252 -31.72311 -31.14539 -29.95262 -29.57276 -28.03441 -26.83317 -25.98883 -24.12276 -23.34000 -22.93268 -22.37043 -20.23560 -19.80476 -18.91705 -17.95654 -17.46233 -17.29480 -16.50669 -16.39640 -16.13340 -15.72549 -15.66287 -15.40660 -14.94560 -14.84871 -14.46905 -14.32698 -14.24328 -14.11672 -13.78493 -13.42670 -13.25791 -13.04125 -12.88458 -12.83397 -12.63179 -12.51272 -12.46117 -12.08952 -12.04822 -11.98239 -11.76418 -11.67865 -11.55961 -11.36590 -11.32267 -11.27245 -11.10689 -10.70967 -10.37161 -9.73386 -9.47301 -8.75742 -8.18240 -6.15066 0.53676 0.57993 1.33522 1.35105 1.47582 2.41503 2.91617 2.99604 3.18666 3.36016 3.61363 3.71828 3.90314 4.13126 4.17967 4.22859 4.23443 4.33143 4.36469 4.40457 4.46438 4.47835 4.51746 4.56157 4.61279 4.62385 4.68183 4.70207 4.79785 4.83187 4.88326 4.94054 5.03571 5.05660 5.06856 5.14896 5.22622 5.23539 5.26878 5.34274 5.39682 5.40999 5.46495 5.56617 5.69891 5.70042 5.71858 5.85840 6.12381 6.21210 6.41411 6.52147 6.83337 6.90317 7.46555 8.99073 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.004221 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.300021 B = 6632.176849 C = 7448.344591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.029 3.971 4 C 0.062 3.938 5 N -0.529 5.529 6 C 0.167 3.833 7 C -0.486 4.486 8 H 0.034 0.966 9 C 0.010 3.990 10 N -0.957 5.957 11 Si 0.936 3.064 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.248 1.248 15 C 0.075 3.925 16 H 0.042 0.958 17 C -0.108 4.108 18 C -0.100 4.100 19 C -0.021 4.021 20 C -0.137 4.137 21 C -0.073 4.073 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.135 4.135 25 C -0.127 4.127 26 C -0.132 4.132 27 C -0.098 4.098 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.028 0.972 36 H 0.005 0.995 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.114 0.886 46 H 0.131 0.869 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.138 0.862 50 H 0.046 0.954 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 17.728 -15.680 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.317 6.317 3 C -0.049 4.049 4 C -0.066 4.066 5 N -0.251 5.251 6 C 0.040 3.960 7 C -0.525 4.525 8 H 0.052 0.948 9 C -0.186 4.186 10 N -0.599 5.599 11 Si 0.761 3.239 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.172 1.172 15 C -0.033 4.033 16 H 0.060 0.940 17 C -0.145 4.145 18 C -0.138 4.138 19 C -0.022 4.022 20 C -0.194 4.194 21 C -0.073 4.073 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.144 4.144 26 C -0.150 4.150 27 C -0.136 4.136 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.045 0.955 36 H 0.023 0.977 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.132 0.868 46 H 0.149 0.851 47 H 0.157 0.843 48 H 0.159 0.841 49 H 0.156 0.844 50 H 0.065 0.935 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.183 17.430 -15.629 23.782 hybrid contribution -1.110 -1.079 0.292 1.575 sum -5.293 16.352 -15.337 23.035 Atomic orbital electron populations 1.22851 0.81475 1.02558 1.00628 1.88289 1.19983 1.28362 1.95044 1.23367 0.95851 0.84931 1.00738 1.22183 0.91190 1.00168 0.93072 1.62109 1.58824 1.02747 1.01468 1.20091 0.95676 0.85815 0.94429 1.21212 1.23945 0.94313 1.13002 0.94813 1.25635 0.97847 0.98200 0.96868 1.70056 1.46603 1.09217 1.34064 0.85879 0.80429 0.78411 0.79208 1.20073 1.21256 1.17205 1.22727 0.96026 0.94203 0.90345 0.94024 1.22358 1.01599 0.93522 0.97066 1.22218 1.02877 0.95697 0.92985 1.20073 0.93256 0.95104 0.93746 1.21966 0.95458 1.02269 0.99686 1.19965 0.94175 0.98884 0.94230 1.21158 0.92813 1.00690 1.00005 1.21383 0.99038 1.00222 0.94214 1.21424 0.98112 1.00526 0.95242 1.21447 0.92557 0.99722 1.00710 1.21417 1.00114 1.00721 0.92754 1.22515 1.00644 0.96568 0.93871 0.93203 0.90705 0.92849 0.92179 0.92062 0.92625 0.88200 0.95496 0.97688 0.93040 0.91611 0.90589 0.89930 0.91118 0.90618 0.92609 0.92269 0.86764 0.85140 0.84315 0.84087 0.84423 0.93491 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -15.70 7.62 -148.98 -1.13 -16.84 16 3 C 0.03 0.94 5.70 71.98 0.41 1.35 16 4 C 0.06 2.33 5.42 86.30 0.47 2.80 16 5 N -0.53 -21.59 4.64 -867.23 -4.03 -25.61 16 6 C 0.17 8.24 3.23 85.56 0.28 8.52 16 7 C -0.49 -29.03 8.76 25.60 0.22 -28.81 16 8 H 0.03 2.24 7.24 -2.91 -0.02 2.22 16 9 C 0.01 0.61 5.47 84.65 0.46 1.08 16 10 N -0.96 -62.38 13.96 21.45 0.30 -62.08 16 11 Si 0.94 47.06 27.57 68.60 1.89 48.95 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 13 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 14 H -0.25 -11.77 6.40 99.48 0.64 -11.13 16 15 C 0.08 2.39 1.93 46.33 0.09 2.48 16 16 H 0.04 1.33 6.25 -2.38 -0.01 1.32 16 17 C -0.11 -2.65 5.28 31.67 0.17 -2.48 16 18 C -0.10 -2.07 5.83 31.32 0.18 -1.89 16 19 C -0.02 -0.50 0.78 -52.21 -0.04 -0.54 16 20 C -0.14 -2.66 6.80 71.98 0.49 -2.17 16 21 C -0.07 -1.74 4.68 -19.86 -0.09 -1.83 16 22 C -0.13 -3.24 8.03 22.27 0.18 -3.06 16 23 C -0.13 -2.90 10.05 22.27 0.22 -2.68 16 24 C -0.14 -2.63 10.05 22.27 0.22 -2.41 16 25 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16 26 C -0.13 -2.77 9.01 22.27 0.20 -2.57 16 27 C -0.10 -3.09 4.25 31.80 0.14 -2.96 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.73 5.94 -2.39 -0.01 1.72 16 33 H 0.06 2.58 6.33 -2.39 -0.02 2.57 16 34 H 0.10 3.07 7.40 -2.39 -0.02 3.05 16 35 H 0.03 1.38 4.01 -2.39 -0.01 1.37 16 36 H 0.01 0.26 6.56 -2.39 -0.02 0.25 16 37 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 40 H 0.08 1.42 7.67 -2.39 -0.02 1.40 16 41 H 0.07 1.43 7.19 -2.39 -0.02 1.41 16 42 H 0.07 1.17 7.63 -2.39 -0.02 1.16 16 43 H 0.05 1.10 7.47 -2.38 -0.02 1.08 16 44 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.11 3.04 7.88 -2.91 -0.02 3.01 16 46 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 47 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 48 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 49 H 0.14 2.38 5.95 -2.91 -0.02 2.36 16 50 H 0.05 1.58 7.57 -2.38 -0.02 1.56 16 51 H 0.06 2.04 7.10 -2.39 -0.02 2.02 16 Total: -1.00 -72.43 382.36 2.92 -69.51 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.82 Total: 21.55 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 5.07 Total: -35.48 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -3.73 Total: -87.70 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -1.13 Total: -16.84 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.89 Total: 48.95 kcal Total: -72.43 2.92 -69.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615113819.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.127 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds