Wall clock time and date at job start Tue Mar 31 2020 12:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53000 * 109.47055 * 2 1 4 4 C 1.53001 * 109.47096 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46900 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46900 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47096 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.47138 * 54.99843 * 7 6 5 9 9 C 1.52999 * 109.47341 * 295.00021 * 7 6 5 10 10 C 1.53004 * 109.47231 * 174.99585 * 7 6 5 11 11 C 1.50695 * 109.47248 * 184.99806 * 10 7 6 12 12 O 1.21283 * 120.00147 * 0.02562 * 11 10 7 13 13 N 1.34779 * 120.00017 * 179.97438 * 11 10 7 14 14 C 1.39239 * 119.99906 * 175.70872 * 13 11 10 15 15 C 1.39481 * 119.83503 * 215.01706 * 14 13 11 16 16 C 1.36377 * 120.16831 * 179.71681 * 15 14 13 17 17 C 1.40864 * 119.82616 * 0.58262 * 16 15 14 18 18 C 1.41156 * 120.16086 * 179.67440 * 17 16 15 19 19 H 1.08008 * 119.99844 * 214.80330 * 18 17 16 20 20 C 1.39906 * 120.00214 * 34.80177 * 18 17 16 21 21 N 1.30870 * 119.99670 * 355.55945 * 20 18 17 22 22 Si 1.86800 * 119.99935 * 175.55916 * 20 18 17 23 23 H 1.48507 * 109.47109 * 90.00064 * 22 20 18 24 24 H 1.48499 * 109.47086 * 209.99737 * 22 20 18 25 25 H 1.48497 * 109.47078 * 330.00006 * 22 20 18 26 26 C 1.40867 * 119.67647 * 359.69793 * 17 16 15 27 27 C 1.36379 * 119.82466 * 359.97438 * 26 17 16 28 28 H 1.09000 * 109.47782 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47289 * 300.00028 * 1 2 3 30 30 H 1.09000 * 109.47444 * 59.99620 * 1 2 3 31 31 H 1.09002 * 109.47039 * 240.00462 * 2 1 3 32 32 H 1.09000 * 109.47444 * 120.00380 * 2 1 3 33 33 H 1.09002 * 109.47542 * 60.00145 * 3 2 1 34 34 H 1.09000 * 109.47769 * 300.00203 * 3 2 1 35 35 H 1.08992 * 109.47227 * 60.00310 * 4 3 2 36 36 H 1.09003 * 109.46912 * 299.99798 * 4 3 2 37 37 H 1.08992 * 109.47632 * 60.00261 * 5 4 3 38 38 H 1.09003 * 109.46916 * 299.99481 * 5 4 3 39 39 H 1.09001 * 109.47508 * 59.99498 * 6 5 4 40 40 H 1.09003 * 109.46912 * 299.99483 * 6 5 4 41 41 H 1.08994 * 109.46852 * 59.99743 * 9 7 6 42 42 H 1.08997 * 109.47533 * 180.02562 * 9 7 6 43 43 H 1.09005 * 109.46859 * 299.99993 * 9 7 6 44 44 H 1.08999 * 109.47414 * 305.00417 * 10 7 6 45 45 H 1.09001 * 109.46756 * 65.00329 * 10 7 6 46 46 H 0.96996 * 120.00079 * 355.72419 * 13 11 10 47 47 H 1.07998 * 119.91161 * 0.02562 * 15 14 13 48 48 H 1.08002 * 120.08049 * 180.25637 * 16 15 14 49 49 H 0.97003 * 119.99458 * 180.02562 * 21 20 18 50 50 H 1.07994 * 120.08790 * 179.97438 * 26 17 16 51 51 H 1.08004 * 119.91440 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0798 2.8851 0.0000 6 6 5.6098 2.8851 -0.0013 7 6 6.1198 4.3276 -0.0013 8 1 5.6859 4.8664 0.8411 9 6 5.7140 5.0121 -1.3081 10 6 7.6448 4.3294 0.1233 11 6 8.1370 5.7484 0.2467 12 8 7.3460 6.6677 0.2366 13 7 9.4562 5.9958 0.3694 14 6 9.9190 7.3088 0.3936 15 6 11.1457 7.6231 -0.1912 16 6 11.6028 8.9079 -0.1765 17 6 10.8383 9.9164 0.4421 18 6 11.3079 11.2474 0.4674 19 1 11.1047 11.8755 1.3222 20 6 12.0366 11.7528 -0.6147 21 7 12.3576 10.9676 -1.6112 22 14 12.5512 13.5484 -0.6370 23 1 13.8825 13.6898 0.0056 24 1 12.6264 14.0243 -2.0416 25 1 11.5537 14.3584 0.1074 26 6 9.6032 9.5903 1.0357 27 6 9.1561 8.3022 1.0072 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9328 0.9289 -0.8908 36 1 3.9336 0.9286 0.8892 37 1 3.7170 3.3984 0.8904 38 1 3.7161 3.3994 -0.8896 39 1 5.9725 2.3718 -0.8919 40 1 5.9739 2.3706 0.8881 41 1 4.6277 5.0107 -1.3967 42 1 6.0777 6.0396 -1.3083 43 1 6.1479 4.4732 -2.1504 44 1 7.9378 3.7648 1.0084 45 1 8.0822 3.8690 -0.7626 46 1 10.0832 5.2591 0.4407 47 1 11.7326 6.8478 -0.6611 48 1 12.5509 9.1504 -0.6333 49 1 12.8631 11.3180 -2.3613 50 1 9.0119 10.3582 1.5121 51 1 8.2091 8.0506 1.4615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727663602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:22 Heat of formation + Delta-G solvation = -66.241503 kcal Electronic energy + Delta-G solvation = -25246.071805 eV Core-core repulsion = 21722.112732 eV Total energy + Delta-G solvation = -3523.959073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.81935 -37.75582 -37.01598 -35.57385 -34.34907 -32.90879 -32.41614 -29.63705 -29.32529 -28.37002 -27.42644 -25.11462 -24.38262 -22.06249 -21.43536 -21.25348 -20.74449 -19.92094 -19.37499 -17.33564 -16.80122 -16.25867 -16.19091 -15.40781 -15.15704 -14.90082 -14.43787 -14.12950 -14.03404 -13.93412 -13.55808 -13.19516 -12.91870 -12.73435 -12.67271 -12.34519 -12.19670 -12.07654 -11.78629 -11.71804 -11.63755 -11.38433 -11.33314 -11.23780 -11.12320 -11.07509 -10.92500 -10.80582 -10.69136 -10.59931 -10.50175 -10.42350 -9.95796 -9.46413 -9.38661 -9.03178 -8.77889 -7.52588 -6.83433 -6.59969 -4.32373 2.59337 3.05101 3.09849 3.11493 3.15412 3.38631 3.77888 3.99563 4.37895 4.57291 4.70546 4.72074 4.79471 4.83147 4.89111 5.00415 5.13136 5.24419 5.27171 5.40209 5.42018 5.51985 5.55503 5.59207 5.63167 5.67846 5.69590 5.75486 5.78868 5.80585 5.84798 5.95299 5.99034 6.10646 6.13581 6.20672 6.22359 6.42696 6.46847 6.60727 6.80617 6.95878 7.09263 7.24076 7.32299 7.66026 7.78278 7.90908 8.08596 8.30512 8.34389 8.64922 8.81761 8.94747 9.03124 10.31136 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.038346 B = 0.001716 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.017234 B =16312.725069 C =16578.922923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.074 4.074 8 H 0.077 0.923 9 C -0.154 4.154 10 C -0.136 4.136 11 C 0.497 3.503 12 O -0.528 6.528 13 N -0.656 5.656 14 C 0.005 3.995 15 C -0.123 4.123 16 C -0.141 4.141 17 C 0.099 3.901 18 C -0.462 4.462 19 H 0.075 0.925 20 C 0.070 3.930 21 N -0.813 5.813 22 Si 0.915 3.085 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.205 4.205 27 C -0.086 4.086 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.395 0.605 47 H 0.090 0.910 48 H 0.132 0.868 49 H 0.277 0.723 50 H 0.095 0.905 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.859 -19.461 1.299 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.093 4.093 8 H 0.095 0.905 9 C -0.211 4.211 10 C -0.176 4.176 11 C 0.285 3.715 12 O -0.405 6.405 13 N -0.298 5.298 14 C -0.087 4.087 15 C -0.143 4.143 16 C -0.161 4.161 17 C 0.096 3.904 18 C -0.493 4.493 19 H 0.093 0.907 20 C -0.145 4.145 21 N -0.440 5.440 22 Si 0.740 3.260 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.225 4.225 27 C -0.106 4.106 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.228 0.772 47 H 0.108 0.892 48 H 0.149 0.851 49 H 0.088 0.912 50 H 0.113 0.887 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.319 -18.804 1.044 23.067 hybrid contribution 0.626 0.372 -0.217 0.760 sum -12.693 -18.432 0.827 22.395 Atomic orbital electron populations 1.21783 0.96034 1.01460 1.01824 1.21542 0.95753 0.97144 1.01869 1.21641 0.95671 0.96520 1.02089 1.21618 0.95138 0.97146 1.01840 1.21647 0.95465 0.96372 1.02391 1.21662 0.95467 0.96310 1.01741 1.20869 0.92910 0.95561 0.99931 0.90454 1.21995 1.00782 1.02615 0.95733 1.21745 0.97668 0.94553 1.03639 1.20638 0.82518 0.91303 0.77087 1.90645 1.54460 1.46242 1.49192 1.43083 1.07357 1.07511 1.71894 1.17300 0.98237 0.83317 1.09870 1.20323 0.95766 0.97111 1.01083 1.21185 1.01220 0.90241 1.03428 1.17721 0.89636 0.93217 0.89812 1.19493 1.29645 0.97069 1.03055 0.90659 1.25870 0.93624 1.00081 0.94939 1.69765 1.30512 1.36528 1.07228 0.86205 0.79526 0.82127 0.78156 1.19542 1.20317 1.18739 1.20812 0.97302 0.95129 1.09300 1.20401 0.98662 0.92898 0.98665 0.92924 0.92778 0.92784 0.92164 0.92163 0.92058 0.92064 0.92168 0.92197 0.92020 0.91632 0.92072 0.92162 0.92989 0.90371 0.93638 0.89468 0.89341 0.77223 0.89164 0.85084 0.91191 0.88654 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.15 0.37 -0.52 16 2 C -0.13 -0.78 5.93 -26.74 -0.16 -0.94 16 3 C -0.12 -0.83 5.21 -26.73 -0.14 -0.97 16 4 C -0.12 -0.86 5.21 -26.73 -0.14 -1.00 16 5 C -0.12 -1.01 4.97 -26.73 -0.13 -1.14 16 6 C -0.11 -1.00 4.68 -26.73 -0.13 -1.12 16 7 C -0.07 -0.85 2.04 -90.62 -0.18 -1.03 16 8 H 0.08 1.01 7.96 -51.93 -0.41 0.60 16 9 C -0.15 -1.96 8.69 37.16 0.32 -1.63 16 10 C -0.14 -1.57 5.18 -27.88 -0.14 -1.71 16 11 C 0.50 8.39 7.38 -10.99 -0.08 8.31 16 12 O -0.53 -10.99 11.38 5.55 0.06 -10.92 16 13 N -0.66 -11.42 5.30 -9.74 -0.05 -11.47 16 14 C 0.01 0.11 6.31 -83.57 -0.53 -0.41 16 15 C -0.12 -2.82 9.90 -39.79 -0.39 -3.21 16 16 C -0.14 -3.65 8.61 -39.26 -0.34 -3.99 16 17 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 18 C -0.46 -12.45 9.02 -37.85 -0.34 -12.79 16 19 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 20 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 21 N -0.81 -21.34 10.60 55.55 0.59 -20.75 16 22 Si 0.91 19.18 29.56 -169.99 -5.03 14.15 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 26 C -0.21 -5.27 9.74 -39.26 -0.38 -5.65 16 27 C -0.09 -2.09 8.61 -39.79 -0.34 -2.43 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.57 6.56 -51.93 -0.34 0.23 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 42 H 0.08 1.27 5.95 -51.93 -0.31 0.96 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.39 5.35 8.82 -40.82 -0.36 4.99 16 47 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 48 H 0.13 3.51 6.13 -52.49 -0.32 3.18 16 49 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 50 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 51 H 0.11 2.56 6.22 -52.48 -0.33 2.23 16 LS Contribution 403.13 15.07 6.08 6.08 Total: -1.00 -29.67 403.13 -10.92 -40.59 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -9.15 Total: 8.82 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -3.43 Total: -26.49 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.54 Total: -32.22 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.06 Total: -10.92 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.67 -10.92 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727663602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.650 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds