Wall clock time and date at job start Tue Mar 31 2020 12:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47333 * 2 1 4 4 C 1.53004 * 109.47271 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46843 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46843 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47032 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46967 * 305.00018 * 7 6 5 9 9 C 1.53001 * 109.46934 * 64.99705 * 7 6 5 10 10 C 1.52993 * 109.47012 * 184.99481 * 7 6 5 11 11 C 1.50704 * 109.47174 * 175.00106 * 10 7 6 12 12 O 1.21287 * 119.99814 * 0.02562 * 11 10 7 13 13 N 1.34770 * 120.00179 * 180.02562 * 11 10 7 14 14 C 1.39245 * 120.00173 * 174.90202 * 13 11 10 15 15 C 1.39480 * 119.82899 * 325.34886 * 14 13 11 16 16 C 1.36377 * 120.16670 * 179.71740 * 15 14 13 17 17 C 1.40870 * 119.82543 * 0.57847 * 16 15 14 18 18 C 1.41150 * 120.16171 * 179.68108 * 17 16 15 19 19 H 1.08003 * 119.99745 * 205.35603 * 18 17 16 20 20 C 1.39903 * 120.00325 * 25.35188 * 18 17 16 21 21 N 1.30872 * 120.00198 * 16.82627 * 20 18 17 22 22 Si 1.86798 * 120.00017 * 196.82438 * 20 18 17 23 23 H 1.48503 * 109.47143 * 90.00250 * 22 20 18 24 24 H 1.48506 * 109.47148 * 209.99991 * 22 20 18 25 25 H 1.48501 * 109.47316 * 330.00140 * 22 20 18 26 26 C 1.40862 * 119.67525 * 359.69249 * 17 16 15 27 27 C 1.36382 * 119.82735 * 0.02562 * 26 17 16 28 28 H 1.09010 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47182 * 299.99824 * 1 2 3 30 30 H 1.08996 * 109.47377 * 60.00525 * 1 2 3 31 31 H 1.09007 * 109.47490 * 239.99593 * 2 1 3 32 32 H 1.09005 * 109.47661 * 120.00015 * 2 1 3 33 33 H 1.08997 * 109.47316 * 60.00183 * 3 2 1 34 34 H 1.09008 * 109.46825 * 299.99797 * 3 2 1 35 35 H 1.08997 * 109.47086 * 59.99693 * 4 3 2 36 36 H 1.08998 * 109.46639 * 299.99478 * 4 3 2 37 37 H 1.08999 * 109.47032 * 59.99764 * 5 4 3 38 38 H 1.08996 * 109.46700 * 299.99570 * 5 4 3 39 39 H 1.08997 * 109.47086 * 59.99723 * 6 5 4 40 40 H 1.08998 * 109.46639 * 299.99509 * 6 5 4 41 41 H 1.09001 * 109.47109 * 59.99809 * 9 7 6 42 42 H 1.09000 * 109.47450 * 179.97438 * 9 7 6 43 43 H 1.08995 * 109.47385 * 300.00189 * 9 7 6 44 44 H 1.08994 * 109.47617 * 295.00373 * 10 7 6 45 45 H 1.09003 * 109.47012 * 55.00617 * 10 7 6 46 46 H 0.97000 * 120.00316 * 354.90129 * 13 11 10 47 47 H 1.08000 * 119.91964 * 359.97438 * 15 14 13 48 48 H 1.08004 * 120.08481 * 180.24825 * 16 15 14 49 49 H 0.96999 * 120.00393 * 180.02562 * 21 20 18 50 50 H 1.08000 * 120.09337 * 179.97438 * 26 17 16 51 51 H 1.08002 * 119.91863 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6100 2.8850 -0.0026 7 6 6.1200 4.3275 -0.0039 8 1 5.6846 4.8660 -0.8456 9 6 5.7162 5.0123 1.3034 10 6 7.6447 4.3292 -0.1307 11 6 8.1368 5.7482 -0.2555 12 8 7.3458 6.6676 -0.2436 13 7 9.4557 5.9955 -0.3803 14 6 9.9024 7.2956 -0.6020 15 6 9.1389 8.1689 -1.3766 16 6 9.5670 9.4455 -1.5934 17 6 10.7896 9.8775 -1.0427 18 6 11.2427 11.1951 -1.2681 19 1 12.2985 11.4181 -1.2235 20 6 10.3242 12.2122 -1.5495 21 7 9.0541 12.0382 -1.2864 22 14 10.9108 13.8188 -2.3006 23 1 10.8731 13.7157 -3.7816 24 1 10.0237 14.9248 -1.8588 25 1 12.3017 14.0932 -1.8587 26 6 11.5577 8.9880 -0.2662 27 6 11.1138 7.7161 -0.0534 28 1 -0.3634 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8901 35 1 3.9329 0.9287 -0.8908 36 1 3.9336 0.9285 0.8892 37 1 3.7170 3.3991 0.8887 38 1 3.7163 3.3985 -0.8913 39 1 5.9726 2.3710 -0.8927 40 1 5.9740 2.3714 0.8872 41 1 6.1515 4.4737 2.1452 42 1 6.0799 6.0398 1.3028 43 1 4.6301 5.0110 1.3939 44 1 8.0835 3.8690 0.7545 45 1 7.9362 3.7644 -1.0163 46 1 10.0939 5.2679 -0.3157 47 1 8.2044 7.8346 -1.8024 48 1 8.9729 10.1218 -2.1901 49 1 8.4172 12.7432 -1.4818 50 1 12.4962 9.3119 0.1589 51 1 11.7017 7.0328 0.5414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727663603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:26 Heat of formation + Delta-G solvation = -67.525751 kcal Electronic energy + Delta-G solvation = -25323.876773 eV Core-core repulsion = 21799.862011 eV Total energy + Delta-G solvation = -3524.014762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -39.75679 -37.73230 -36.99599 -35.55060 -34.36036 -32.92200 -32.40184 -29.60354 -29.32257 -28.40261 -27.41213 -25.10633 -24.37631 -22.01027 -21.37604 -21.24623 -20.88188 -19.86574 -19.27807 -17.30608 -16.84172 -16.24509 -16.13545 -15.49504 -15.10713 -14.83881 -14.38769 -14.09995 -13.99411 -13.91395 -13.60423 -13.18559 -12.90287 -12.74282 -12.68019 -12.34918 -12.15666 -12.00016 -11.82168 -11.75743 -11.64229 -11.43363 -11.34994 -11.16976 -11.12239 -11.02152 -10.91090 -10.77534 -10.58951 -10.51883 -10.47754 -10.39689 -9.90965 -9.74515 -9.39678 -9.04287 -8.61327 -7.50416 -6.97630 -6.70979 -4.27279 2.61873 3.03299 3.08749 3.12239 3.12716 3.43987 3.81275 3.95239 4.39940 4.59058 4.66404 4.73015 4.81863 4.85447 4.91641 5.02821 5.15721 5.26639 5.29839 5.43322 5.43725 5.54327 5.57435 5.61901 5.65708 5.69748 5.73548 5.77649 5.81183 5.82739 5.86699 5.97502 6.00967 6.12939 6.15797 6.17131 6.24432 6.40399 6.45956 6.62500 6.85836 7.02541 7.07546 7.18468 7.32229 7.61586 7.71681 8.00935 8.07267 8.24642 8.36302 8.65022 8.85737 8.90702 9.04679 10.21801 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.001850 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.218562 B =15133.345884 C =15962.366640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.114 4.114 7 C -0.074 4.074 8 H 0.078 0.922 9 C -0.154 4.154 10 C -0.135 4.135 11 C 0.495 3.505 12 O -0.525 6.525 13 N -0.656 5.656 14 C -0.004 4.004 15 C -0.086 4.086 16 C -0.155 4.155 17 C 0.105 3.895 18 C -0.460 4.460 19 H 0.078 0.922 20 C 0.074 3.926 21 N -0.790 5.790 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.215 4.215 27 C -0.106 4.106 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.393 0.607 47 H 0.100 0.900 48 H 0.120 0.880 49 H 0.281 0.719 50 H 0.095 0.905 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.670 -20.121 1.857 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.093 4.093 8 H 0.096 0.904 9 C -0.211 4.211 10 C -0.175 4.175 11 C 0.282 3.718 12 O -0.402 6.402 13 N -0.299 5.299 14 C -0.096 4.096 15 C -0.106 4.106 16 C -0.174 4.174 17 C 0.102 3.898 18 C -0.490 4.490 19 H 0.096 0.904 20 C -0.144 4.144 21 N -0.415 5.415 22 Si 0.733 3.267 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.235 4.235 27 C -0.126 4.126 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.226 0.774 47 H 0.118 0.882 48 H 0.137 0.863 49 H 0.092 0.908 50 H 0.113 0.887 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.493 -19.347 1.858 22.087 hybrid contribution 0.566 0.357 -0.179 0.692 sum -9.927 -18.990 1.679 21.494 Atomic orbital electron populations 1.21785 0.96036 1.01450 1.01833 1.21544 0.95751 0.97153 1.01857 1.21643 0.95679 0.96510 1.02105 1.21617 0.95132 0.97157 1.01817 1.21650 0.95475 0.96353 1.02419 1.21658 0.95463 0.96326 1.01698 1.20872 0.92958 0.95537 0.99962 0.90405 1.21992 1.00805 1.02608 0.95685 1.21736 0.97639 0.94624 1.03549 1.20628 0.82597 0.91252 0.77289 1.90686 1.54430 1.46214 1.48821 1.43077 1.06998 1.08731 1.71132 1.17186 0.98394 0.85267 1.08793 1.20401 0.98188 0.94311 0.97660 1.20987 0.98968 0.94089 1.03398 1.17663 0.91231 0.92590 0.88290 1.19546 0.94668 0.92560 1.42200 0.90406 1.25933 0.94478 1.00768 0.93231 1.69859 1.03039 1.34306 1.34278 0.86307 0.79794 0.80474 0.80093 1.19291 1.20332 1.18635 1.20549 1.02348 0.94425 1.06212 1.20056 0.95953 0.96251 1.00356 0.92932 0.92785 0.92766 0.92163 0.92178 0.92059 0.92045 0.92196 0.92193 0.91631 0.91997 0.92170 0.92110 0.93700 0.90353 0.92989 0.89515 0.89438 0.77420 0.88200 0.86259 0.90805 0.88697 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.15 0.37 -0.55 16 2 C -0.13 -0.80 5.93 -26.74 -0.16 -0.96 16 3 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 4 C -0.12 -0.89 5.22 -26.73 -0.14 -1.03 16 5 C -0.12 -1.05 4.97 -26.73 -0.13 -1.19 16 6 C -0.11 -1.03 4.68 -26.73 -0.13 -1.16 16 7 C -0.07 -0.88 2.04 -90.62 -0.18 -1.07 16 8 H 0.08 1.07 7.96 -51.93 -0.41 0.66 16 9 C -0.15 -2.00 8.69 37.16 0.32 -1.67 16 10 C -0.14 -1.61 5.18 -27.88 -0.14 -1.75 16 11 C 0.50 8.60 7.27 -10.99 -0.08 8.53 16 12 O -0.53 -11.42 11.70 5.55 0.06 -11.35 16 13 N -0.66 -11.59 5.31 -9.74 -0.05 -11.64 16 14 C 0.00 -0.09 6.27 -83.57 -0.52 -0.62 16 15 C -0.09 -2.15 8.57 -39.79 -0.34 -2.50 16 16 C -0.15 -4.19 8.63 -39.26 -0.34 -4.53 16 17 C 0.10 2.84 5.57 -106.80 -0.59 2.25 16 18 C -0.46 -12.33 9.04 -37.85 -0.34 -12.68 16 19 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 20 C 0.07 1.89 5.15 -17.34 -0.09 1.80 16 21 N -0.79 -21.08 10.94 55.55 0.61 -20.48 16 22 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 C -0.22 -5.29 9.74 -39.26 -0.38 -5.67 16 27 C -0.11 -2.36 9.90 -39.79 -0.39 -2.75 16 28 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.59 6.57 -51.93 -0.34 0.25 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 1.30 5.95 -51.93 -0.31 0.99 16 43 H 0.05 0.61 6.57 -51.93 -0.34 0.27 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.39 5.35 8.82 -40.82 -0.36 4.99 16 47 H 0.10 2.51 6.48 -52.49 -0.34 2.17 16 48 H 0.12 3.35 6.18 -52.48 -0.32 3.03 16 49 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 50 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 51 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 403.77 15.07 6.08 6.08 Total: -1.00 -30.10 403.77 -10.91 -41.01 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -9.16 Total: 9.05 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: -3.42 Total: -26.54 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.56 Total: -32.12 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.06 Total: -11.35 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.10 -10.91 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727663603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.517 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds