Wall clock time and date at job start Tue Mar 31 2020 12:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47333 * 2 1 4 4 C 1.53004 * 109.47271 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46843 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46843 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47032 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46967 * 305.00018 * 7 6 5 9 9 C 1.53001 * 109.46934 * 64.99705 * 7 6 5 10 10 C 1.52993 * 109.47012 * 184.99481 * 7 6 5 11 11 C 1.50704 * 109.47174 * 175.00106 * 10 7 6 12 12 O 1.21287 * 119.99814 * 0.02562 * 11 10 7 13 13 N 1.34770 * 120.00179 * 180.02562 * 11 10 7 14 14 C 1.39245 * 120.00173 * 174.90202 * 13 11 10 15 15 C 1.39480 * 119.82899 * 325.34886 * 14 13 11 16 16 C 1.36377 * 120.16670 * 179.71740 * 15 14 13 17 17 C 1.40870 * 119.82543 * 0.57847 * 16 15 14 18 18 C 1.41150 * 120.16171 * 179.68108 * 17 16 15 19 19 H 1.08003 * 119.99745 * 205.35603 * 18 17 16 20 20 C 1.39903 * 120.00325 * 25.35188 * 18 17 16 21 21 N 1.30872 * 120.00198 * 16.82627 * 20 18 17 22 22 Si 1.86798 * 120.00017 * 196.82438 * 20 18 17 23 23 H 1.48503 * 109.47143 * 90.00250 * 22 20 18 24 24 H 1.48506 * 109.47148 * 209.99991 * 22 20 18 25 25 H 1.48501 * 109.47316 * 330.00140 * 22 20 18 26 26 C 1.40862 * 119.67525 * 359.69249 * 17 16 15 27 27 C 1.36382 * 119.82735 * 0.02562 * 26 17 16 28 28 H 1.09010 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47182 * 299.99824 * 1 2 3 30 30 H 1.08996 * 109.47377 * 60.00525 * 1 2 3 31 31 H 1.09007 * 109.47490 * 239.99593 * 2 1 3 32 32 H 1.09005 * 109.47661 * 120.00015 * 2 1 3 33 33 H 1.08997 * 109.47316 * 60.00183 * 3 2 1 34 34 H 1.09008 * 109.46825 * 299.99797 * 3 2 1 35 35 H 1.08997 * 109.47086 * 59.99693 * 4 3 2 36 36 H 1.08998 * 109.46639 * 299.99478 * 4 3 2 37 37 H 1.08999 * 109.47032 * 59.99764 * 5 4 3 38 38 H 1.08996 * 109.46700 * 299.99570 * 5 4 3 39 39 H 1.08997 * 109.47086 * 59.99723 * 6 5 4 40 40 H 1.08998 * 109.46639 * 299.99509 * 6 5 4 41 41 H 1.09001 * 109.47109 * 59.99809 * 9 7 6 42 42 H 1.09000 * 109.47450 * 179.97438 * 9 7 6 43 43 H 1.08995 * 109.47385 * 300.00189 * 9 7 6 44 44 H 1.08994 * 109.47617 * 295.00373 * 10 7 6 45 45 H 1.09003 * 109.47012 * 55.00617 * 10 7 6 46 46 H 0.97000 * 120.00316 * 354.90129 * 13 11 10 47 47 H 1.08000 * 119.91964 * 359.97438 * 15 14 13 48 48 H 1.08004 * 120.08481 * 180.24825 * 16 15 14 49 49 H 0.96999 * 120.00393 * 180.02562 * 21 20 18 50 50 H 1.08000 * 120.09337 * 179.97438 * 26 17 16 51 51 H 1.08002 * 119.91863 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6100 2.8850 -0.0026 7 6 6.1200 4.3275 -0.0039 8 1 5.6846 4.8660 -0.8456 9 6 5.7162 5.0123 1.3034 10 6 7.6447 4.3292 -0.1307 11 6 8.1368 5.7482 -0.2555 12 8 7.3458 6.6676 -0.2436 13 7 9.4557 5.9955 -0.3803 14 6 9.9024 7.2956 -0.6020 15 6 9.1389 8.1689 -1.3766 16 6 9.5670 9.4455 -1.5934 17 6 10.7896 9.8775 -1.0427 18 6 11.2427 11.1951 -1.2681 19 1 12.2985 11.4181 -1.2235 20 6 10.3242 12.2122 -1.5495 21 7 9.0541 12.0382 -1.2864 22 14 10.9108 13.8188 -2.3006 23 1 10.8731 13.7157 -3.7816 24 1 10.0237 14.9248 -1.8588 25 1 12.3017 14.0932 -1.8587 26 6 11.5577 8.9880 -0.2662 27 6 11.1138 7.7161 -0.0534 28 1 -0.3634 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8901 35 1 3.9329 0.9287 -0.8908 36 1 3.9336 0.9285 0.8892 37 1 3.7170 3.3991 0.8887 38 1 3.7163 3.3985 -0.8913 39 1 5.9726 2.3710 -0.8927 40 1 5.9740 2.3714 0.8872 41 1 6.1515 4.4737 2.1452 42 1 6.0799 6.0398 1.3028 43 1 4.6301 5.0110 1.3939 44 1 8.0835 3.8690 0.7545 45 1 7.9362 3.7644 -1.0163 46 1 10.0939 5.2679 -0.3157 47 1 8.2044 7.8346 -1.8024 48 1 8.9729 10.1218 -2.1901 49 1 8.4172 12.7432 -1.4818 50 1 12.4962 9.3119 0.1589 51 1 11.7017 7.0328 0.5414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727663603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:24 Heat of formation + Delta-G solvation = -81.637025 kcal Electronic energy + Delta-G solvation = -25324.488684 eV Core-core repulsion = 21799.862011 eV Total energy + Delta-G solvation = -3524.626673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.24360 -39.27564 -38.02498 -36.45740 -35.97285 -34.70298 -33.13962 -31.46249 -31.04678 -29.40027 -28.46841 -26.68379 -25.34068 -23.35965 -23.01727 -22.16129 -21.82209 -21.04853 -20.57608 -19.25380 -18.35169 -17.66236 -17.08445 -16.84838 -16.48091 -15.84472 -15.70590 -15.32212 -15.23581 -14.79877 -14.71080 -14.50973 -14.41080 -13.95685 -13.77739 -13.70764 -13.45442 -13.36079 -13.13797 -12.93627 -12.81225 -12.67442 -12.44381 -12.33336 -12.29933 -12.16741 -11.85611 -11.73038 -11.71862 -11.63537 -11.46961 -11.38965 -11.23122 -11.20115 -11.14125 -10.69293 -10.31855 -9.45791 -8.85521 -8.60783 -6.27403 0.82602 1.13200 1.37157 1.45517 1.51788 1.90496 2.20364 2.45338 2.77007 3.71859 3.72987 3.82523 3.98216 4.08446 4.11896 4.20598 4.33787 4.36881 4.43452 4.46175 4.59526 4.60797 4.66636 4.73922 4.78044 4.86741 4.88610 4.95704 4.97564 5.00091 5.08684 5.10027 5.14348 5.17516 5.20498 5.24135 5.27785 5.31054 5.33925 5.41110 5.44850 5.49743 5.53082 5.60628 5.64419 5.67503 5.88085 6.08602 6.12856 6.34658 6.67660 6.81912 6.92427 7.01499 7.53224 8.33847 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.001850 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.218562 B =15133.345884 C =15962.366640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.104 4.104 7 C -0.074 4.074 8 H 0.050 0.950 9 C -0.151 4.151 10 C -0.123 4.123 11 C 0.490 3.510 12 O -0.574 6.574 13 N -0.649 5.649 14 C 0.010 3.990 15 C -0.100 4.100 16 C -0.179 4.179 17 C 0.071 3.929 18 C -0.495 4.495 19 H 0.082 0.918 20 C 0.029 3.971 21 N -0.831 5.831 22 Si 0.986 3.014 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.223 4.223 27 C -0.102 4.102 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.418 0.582 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.286 0.714 50 H 0.110 0.890 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.624 -22.847 2.520 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.141 4.141 7 C -0.093 4.093 8 H 0.069 0.931 9 C -0.208 4.208 10 C -0.162 4.162 11 C 0.280 3.720 12 O -0.453 6.453 13 N -0.295 5.295 14 C -0.083 4.083 15 C -0.121 4.121 16 C -0.200 4.200 17 C 0.069 3.931 18 C -0.525 4.525 19 H 0.100 0.900 20 C -0.185 4.185 21 N -0.458 5.458 22 Si 0.806 3.194 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.176 1.176 26 C -0.243 4.243 27 C -0.122 4.122 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.255 0.745 47 H 0.108 0.892 48 H 0.113 0.887 49 H 0.097 0.903 50 H 0.128 0.872 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.428 -22.132 2.531 24.189 hybrid contribution 0.165 1.046 -0.321 1.107 sum -9.263 -21.086 2.209 23.136 Atomic orbital electron populations 1.21797 0.95876 1.01861 1.01697 1.21534 0.95927 0.96569 1.02143 1.21639 0.95722 0.96995 1.01636 1.21565 0.95084 0.96144 1.02357 1.21638 0.95557 0.97158 1.01598 1.21580 0.95325 0.94077 1.03127 1.20859 0.93139 0.97134 0.98136 0.93124 1.21934 1.01231 1.00424 0.97213 1.21791 0.97287 0.90674 1.06452 1.21728 0.81774 0.93201 0.75330 1.90692 1.55622 1.48444 1.50575 1.43039 1.08011 1.07483 1.70945 1.17285 0.97727 0.86910 1.06400 1.20439 0.98381 0.94474 0.98769 1.20882 0.99659 0.94755 1.04656 1.18008 0.91828 0.93747 0.89567 1.19827 0.95166 0.93247 1.44249 0.90014 1.26867 0.94270 1.04436 0.92910 1.69946 1.04425 1.35837 1.35567 0.85148 0.79553 0.75601 0.79051 1.18739 1.19554 1.17629 1.20838 1.02655 0.95177 1.05625 1.20431 0.95893 0.96094 0.99793 0.92261 0.92890 0.92975 0.91919 0.91798 0.92459 0.92656 0.91714 0.91476 0.92301 0.93126 0.90790 0.90477 0.91904 0.94544 0.92493 0.86222 0.86351 0.74507 0.89194 0.88676 0.90340 0.87227 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.39 5.93 30.59 0.18 -1.21 16 3 C -0.12 -1.59 5.21 30.59 0.16 -1.43 16 4 C -0.11 -1.44 5.22 30.60 0.16 -1.28 16 5 C -0.12 -1.92 4.97 30.60 0.15 -1.76 16 6 C -0.10 -1.56 4.68 30.60 0.14 -1.41 16 7 C -0.07 -1.63 2.04 -10.80 -0.02 -1.65 16 8 H 0.05 1.40 7.96 -2.39 -0.02 1.38 16 9 C -0.15 -3.81 8.69 71.98 0.63 -3.18 16 10 C -0.12 -2.51 5.18 29.85 0.15 -2.35 16 11 C 0.49 16.38 7.27 87.66 0.64 17.01 16 12 O -0.57 -25.58 11.70 -3.05 -0.04 -25.61 16 13 N -0.65 -21.45 5.31 -303.11 -1.61 -23.06 16 14 C 0.01 0.46 6.27 38.56 0.24 0.70 16 15 C -0.10 -5.24 8.57 22.13 0.19 -5.05 16 16 C -0.18 -10.26 8.63 22.48 0.19 -10.07 16 17 C 0.07 3.98 5.57 -21.28 -0.12 3.87 16 18 C -0.50 -27.46 9.04 23.39 0.21 -27.24 16 19 H 0.08 4.28 7.90 -2.91 -0.02 4.25 16 20 C 0.03 1.54 5.15 85.24 0.44 1.98 16 21 N -0.83 -46.60 10.94 21.82 0.24 -46.36 16 22 Si 0.99 39.59 29.59 68.60 2.03 41.62 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 26 C -0.22 -10.91 9.74 22.48 0.22 -10.69 16 27 C -0.10 -4.36 9.90 22.13 0.22 -4.14 16 28 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 1.00 6.57 -2.39 -0.02 0.98 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.23 5.95 -2.39 -0.01 1.22 16 43 H 0.06 1.33 6.57 -2.39 -0.02 1.32 16 44 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.42 9.70 8.82 -92.71 -0.82 8.88 16 47 H 0.09 4.77 6.48 -2.91 -0.02 4.76 16 48 H 0.10 5.77 6.18 -2.91 -0.02 5.76 16 49 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 50 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 51 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -70.41 403.77 5.20 -65.22 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: 0.07 Total: 37.07 kcal Atomic # 6 Polarization: -53.38 SS G_CDS: 4.50 Total: -48.88 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -1.37 Total: -69.42 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.04 Total: -25.61 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -70.41 5.20 -65.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727663603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.421 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds