Wall clock time and date at job start Tue Mar 31 2020 12:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47282 * 2 1 4 4 C 1.52999 * 109.47282 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47462 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47183 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47138 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47222 * 54.99721 * 7 6 5 9 9 C 1.53006 * 109.46852 * 294.99769 * 7 6 5 10 10 C 1.52999 * 109.47485 * 174.99993 * 7 6 5 11 11 C 1.50698 * 109.47529 * 184.99796 * 10 7 6 12 12 O 1.21280 * 119.99768 * 355.68376 * 11 10 7 13 13 N 1.34773 * 120.00341 * 175.95581 * 11 10 7 14 14 C 1.37141 * 119.99479 * 5.83857 * 13 11 10 15 15 H 1.07996 * 120.00196 * 297.82014 * 14 13 11 16 16 C 1.38896 * 119.99618 * 117.82625 * 14 13 11 17 17 N 1.31420 * 119.99923 * 4.37341 * 16 14 13 18 18 Si 1.86796 * 119.99636 * 184.37649 * 16 14 13 19 19 H 1.48504 * 109.47600 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47192 * 119.99819 * 18 16 14 21 21 H 1.48499 * 109.47114 * 239.99504 * 18 16 14 22 22 C 1.39784 * 119.99907 * 185.83642 * 13 11 10 23 23 C 1.38955 * 120.08170 * 7.60142 * 22 13 11 24 24 C 1.38081 * 119.92371 * 179.79154 * 23 22 13 25 25 C 1.38313 * 120.07823 * 0.45898 * 24 23 22 26 26 C 1.38304 * 120.15410 * 359.79041 * 25 24 23 27 27 C 1.38088 * 120.07674 * 359.97438 * 26 25 24 28 28 H 1.09007 * 109.46979 * 59.99793 * 1 2 3 29 29 H 1.08993 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47092 * 300.00236 * 1 2 3 31 31 H 1.08998 * 109.47163 * 239.99458 * 2 1 3 32 32 H 1.09000 * 109.46678 * 119.99906 * 2 1 3 33 33 H 1.08998 * 109.47464 * 59.99643 * 3 2 1 34 34 H 1.09007 * 109.47282 * 300.00021 * 3 2 1 35 35 H 1.09006 * 109.47092 * 59.99764 * 4 3 2 36 36 H 1.08992 * 109.47272 * 299.99749 * 4 3 2 37 37 H 1.09006 * 109.46887 * 59.99972 * 5 4 3 38 38 H 1.08998 * 109.47040 * 300.00710 * 5 4 3 39 39 H 1.08995 * 109.47759 * 60.00168 * 6 5 4 40 40 H 1.09000 * 109.47135 * 299.99724 * 6 5 4 41 41 H 1.08996 * 109.46850 * 300.00046 * 9 7 6 42 42 H 1.09001 * 109.46748 * 60.00157 * 9 7 6 43 43 H 1.08996 * 109.47213 * 179.97438 * 9 7 6 44 44 H 1.09004 * 109.47096 * 64.99272 * 10 7 6 45 45 H 1.08998 * 109.46733 * 305.00221 * 10 7 6 46 46 H 0.97005 * 119.99989 * 185.00316 * 17 16 14 47 47 H 1.08003 * 120.03831 * 0.02562 * 23 22 13 48 48 H 1.07999 * 119.96551 * 180.22892 * 24 23 22 49 49 H 1.07997 * 119.92125 * 179.77040 * 25 24 23 50 50 H 1.07997 * 119.96247 * 179.97438 * 26 25 24 51 51 H 1.08004 * 120.03850 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6100 2.8849 -0.0026 7 6 6.1201 4.3274 -0.0026 8 1 5.6862 4.8662 0.8398 9 6 5.7143 5.0118 -1.3095 10 6 7.6450 4.3292 0.1219 11 6 8.1374 5.7481 0.2453 12 8 7.3556 6.6711 0.1563 13 7 9.4471 5.9916 0.4491 14 6 10.3485 4.9584 0.4248 15 1 10.2735 4.1592 1.1473 16 6 11.3580 4.9399 -0.5291 17 7 11.5023 5.9536 -1.3529 18 14 12.5105 3.4740 -0.6408 19 1 12.1400 2.4731 0.3918 20 1 12.4006 2.8596 -1.9883 21 1 13.9074 3.9242 -0.4145 22 6 9.8867 7.2974 0.6853 23 6 8.9644 8.3206 0.8674 24 6 9.4022 9.6085 1.1047 25 6 10.7572 9.8824 1.1519 26 6 11.6780 8.8673 0.9660 27 6 11.2472 7.5762 0.7330 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9287 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 3.7171 3.3990 0.8888 38 1 3.7163 3.3985 -0.8912 39 1 5.9727 2.3709 -0.8927 40 1 5.9741 2.3712 0.8872 41 1 6.1482 4.4729 -2.1517 42 1 4.6279 5.0105 -1.3981 43 1 6.0772 6.0395 -1.3093 44 1 8.0824 3.8685 -0.7640 45 1 7.9379 3.7646 1.0070 46 1 12.1593 5.9099 -2.0652 47 1 7.9062 8.1081 0.8270 48 1 8.6859 10.4036 1.2500 49 1 11.0968 10.8912 1.3341 50 1 12.7352 9.0848 1.0031 51 1 11.9669 6.7841 0.5875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727667440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:36 Heat of formation + Delta-G solvation = -38.096445 kcal Electronic energy + Delta-G solvation = -26563.800654 eV Core-core repulsion = 23041.062042 eV Total energy + Delta-G solvation = -3522.738611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.73999 -37.68753 -36.82829 -35.35903 -34.84633 -32.19814 -31.91325 -29.59751 -29.30383 -28.01013 -26.81675 -25.11013 -24.43607 -22.05604 -21.43315 -21.12970 -20.85950 -19.64572 -19.07754 -17.52100 -16.12912 -16.04864 -15.59116 -15.13991 -15.07992 -14.51837 -14.33505 -14.11575 -13.85211 -13.69439 -13.34915 -13.04444 -12.85863 -12.77372 -12.47676 -12.32541 -11.99496 -11.95073 -11.83841 -11.58770 -11.46047 -11.34260 -11.22429 -11.08701 -11.03857 -10.86157 -10.77521 -10.74551 -10.51829 -10.41636 -10.19949 -10.11886 -10.02733 -9.90345 -9.10258 -8.74177 -8.10845 -7.72290 -6.80464 -6.26699 -4.56685 2.47623 2.63065 3.03127 3.12225 3.15343 3.78387 4.01068 4.45086 4.65811 4.73170 4.75026 4.89321 5.04481 5.15397 5.20482 5.22986 5.31960 5.48275 5.54687 5.56849 5.60442 5.76332 5.82019 5.84581 5.87692 5.91355 5.96224 6.02072 6.04972 6.09442 6.16208 6.18971 6.21560 6.22461 6.34824 6.35859 6.46379 6.50170 6.59252 6.77451 6.80124 6.88133 6.92991 7.07288 7.22034 7.27808 7.57829 7.67716 7.79377 7.88864 8.13239 8.47203 8.86179 9.29431 9.69390 10.49724 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.002832 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.994989 B = 9883.737571 C =11413.916304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.075 4.075 8 H 0.070 0.930 9 C -0.151 4.151 10 C -0.113 4.113 11 C 0.500 3.500 12 O -0.563 6.563 13 N -0.392 5.392 14 C -0.365 4.365 15 H 0.091 0.909 16 C 0.056 3.944 17 N -0.844 5.844 18 Si 0.915 3.085 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.278 1.278 22 C 0.181 3.819 23 C -0.187 4.187 24 C -0.124 4.124 25 C -0.174 4.174 26 C -0.127 4.127 27 C -0.095 4.095 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.273 0.727 47 H 0.166 0.834 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.103 0.897 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.110 -7.821 1.995 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.152 4.152 7 C -0.094 4.094 8 H 0.088 0.912 9 C -0.209 4.209 10 C -0.153 4.153 11 C 0.292 3.708 12 O -0.447 6.447 13 N -0.100 5.100 14 C -0.493 4.493 15 H 0.108 0.892 16 C -0.153 4.153 17 N -0.477 5.477 18 Si 0.740 3.260 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.203 1.203 22 C 0.084 3.916 23 C -0.207 4.207 24 C -0.142 4.142 25 C -0.193 4.193 26 C -0.146 4.146 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.182 0.818 48 H 0.121 0.879 49 H 0.117 0.883 50 H 0.121 0.879 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.346 -7.373 1.794 13.649 hybrid contribution 1.003 -0.649 -0.356 1.247 sum -10.342 -8.022 1.439 13.168 Atomic orbital electron populations 1.21786 0.96139 1.01370 1.01760 1.21549 0.95632 0.97282 1.01895 1.21637 0.95871 0.96366 1.01969 1.21626 0.94884 0.97417 1.01863 1.21640 0.95895 0.96056 1.02113 1.21653 0.94875 0.96880 1.01763 1.20911 0.94331 0.94927 0.99249 0.91162 1.21993 0.99815 1.02956 0.96086 1.21425 0.94903 0.94967 1.04003 1.20942 0.82379 0.91056 0.76408 1.90225 1.56290 1.45524 1.52677 1.41067 1.05617 1.04776 1.58544 1.19323 1.10114 1.02574 1.17250 0.89152 1.25717 0.97801 0.96824 0.95003 1.70050 1.33797 1.28344 1.15499 0.86061 0.79923 0.81337 0.78708 1.18836 1.20253 1.20319 1.18387 0.92854 0.85664 0.94665 1.22437 1.02818 0.91927 1.03510 1.20813 0.94923 0.96323 1.02176 1.20768 0.93699 0.97929 1.06941 1.20780 0.98070 0.93352 1.02401 1.21091 0.95180 0.96538 0.98791 0.92818 0.92989 0.92824 0.92157 0.92159 0.92133 0.92139 0.92185 0.92207 0.92226 0.91795 0.92123 0.92248 0.93837 0.93723 0.90158 0.89100 0.89951 0.91647 0.81790 0.87893 0.88322 0.87918 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -1.05 5.21 -26.73 -0.14 -1.19 16 4 C -0.12 -1.16 5.21 -26.73 -0.14 -1.30 16 5 C -0.12 -1.33 4.97 -26.73 -0.13 -1.46 16 6 C -0.11 -1.46 4.68 -26.73 -0.13 -1.58 16 7 C -0.08 -1.19 2.04 -90.62 -0.19 -1.38 16 8 H 0.07 1.17 8.02 -51.93 -0.42 0.76 16 9 C -0.15 -2.48 8.69 37.16 0.32 -2.16 16 10 C -0.11 -2.10 3.99 -27.88 -0.11 -2.21 16 11 C 0.50 11.49 7.31 -10.99 -0.08 11.41 16 12 O -0.56 -13.48 10.34 5.56 0.06 -13.42 16 13 N -0.39 -9.76 2.61 -58.98 -0.15 -9.92 16 14 C -0.37 -8.87 7.47 -14.93 -0.11 -8.98 16 15 H 0.09 2.09 7.76 -52.49 -0.41 1.68 16 16 C 0.06 1.34 4.11 -17.48 -0.07 1.27 16 17 N -0.84 -21.89 10.88 55.49 0.60 -21.28 16 18 Si 0.91 18.49 29.56 -169.99 -5.02 13.46 16 19 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 C 0.18 4.59 6.08 -83.70 -0.51 4.08 16 23 C -0.19 -4.48 8.97 -39.37 -0.35 -4.83 16 24 C -0.12 -2.62 10.04 -39.61 -0.40 -3.02 16 25 C -0.17 -3.54 10.04 -39.53 -0.40 -3.94 16 26 C -0.13 -2.75 10.04 -39.61 -0.40 -3.14 16 27 C -0.10 -2.33 7.84 -39.37 -0.31 -2.64 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.04 0.63 6.57 -51.93 -0.34 0.29 16 43 H 0.08 1.57 5.80 -51.93 -0.30 1.27 16 44 H 0.09 1.72 8.12 -51.93 -0.42 1.30 16 45 H 0.08 1.43 8.01 -51.93 -0.42 1.02 16 46 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 47 H 0.17 4.02 4.73 -55.15 -0.26 3.76 16 48 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 49 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 50 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 51 H 0.14 3.47 5.16 -52.48 -0.27 3.20 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -26.98 396.34 -10.55 -37.53 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -9.08 Total: 10.58 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -2.93 Total: -22.93 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: 0.45 Total: -31.20 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.06 Total: -13.42 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -26.98 -10.55 -37.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727667440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.569 kcal (2) G-P(sol) polarization free energy of solvation -26.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds