Wall clock time and date at job start Tue Mar 31 2020 12:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46949 * 2 1 4 4 C 1.52993 * 109.47181 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47421 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47540 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47540 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.46536 * 305.00114 * 7 6 5 9 9 C 1.52999 * 109.47137 * 64.99752 * 7 6 5 10 10 C 1.52999 * 109.47356 * 185.00323 * 7 6 5 11 11 C 1.50697 * 109.46974 * 175.00007 * 10 7 6 12 12 O 1.21274 * 120.00350 * 359.97438 * 11 10 7 13 13 N 1.34783 * 119.99971 * 179.97438 * 11 10 7 14 14 C 1.37138 * 119.99804 * 5.53401 * 13 11 10 15 15 H 1.08008 * 120.00194 * 329.36153 * 14 13 11 16 16 C 1.38892 * 120.00176 * 149.35466 * 14 13 11 17 17 N 1.31422 * 120.00140 * 162.96016 * 16 14 13 18 18 Si 1.86798 * 119.99780 * 342.97257 * 16 14 13 19 19 H 1.48497 * 109.47501 * 84.89614 * 18 16 14 20 20 H 1.48506 * 109.46927 * 204.89757 * 18 16 14 21 21 H 1.48499 * 109.46937 * 324.89307 * 18 16 14 22 22 C 1.39783 * 120.00191 * 185.53741 * 13 11 10 23 23 C 1.38961 * 120.07988 * 122.67040 * 22 13 11 24 24 C 1.38073 * 119.92506 * 180.29824 * 23 22 13 25 25 C 1.38314 * 120.07881 * 359.97438 * 24 23 22 26 26 C 1.38310 * 120.15259 * 0.02562 * 25 24 23 27 27 C 1.38077 * 120.08015 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46853 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47313 * 299.99837 * 1 2 3 30 30 H 1.08997 * 109.47024 * 60.00042 * 1 2 3 31 31 H 1.08994 * 109.47198 * 239.99847 * 2 1 3 32 32 H 1.08997 * 109.47024 * 119.99958 * 2 1 3 33 33 H 1.09001 * 109.46981 * 59.99959 * 3 2 1 34 34 H 1.09002 * 109.46808 * 300.00016 * 3 2 1 35 35 H 1.08999 * 109.47347 * 59.99213 * 4 3 2 36 36 H 1.09008 * 109.47182 * 300.00079 * 4 3 2 37 37 H 1.09001 * 109.46869 * 59.99673 * 5 4 3 38 38 H 1.08997 * 109.47094 * 299.99698 * 5 4 3 39 39 H 1.08999 * 109.47127 * 59.99264 * 6 5 4 40 40 H 1.08997 * 109.46840 * 300.00049 * 6 5 4 41 41 H 1.09000 * 109.47019 * 60.00258 * 9 7 6 42 42 H 1.09000 * 109.46905 * 180.02562 * 9 7 6 43 43 H 1.08996 * 109.47063 * 300.00202 * 9 7 6 44 44 H 1.08993 * 109.47024 * 54.99699 * 10 7 6 45 45 H 1.09000 * 109.46799 * 294.99588 * 10 7 6 46 46 H 0.96996 * 120.00240 * 180.02562 * 17 16 14 47 47 H 1.08004 * 120.03808 * 0.25431 * 23 22 13 48 48 H 1.07999 * 119.96417 * 180.02562 * 24 23 22 49 49 H 1.07997 * 119.92056 * 179.97438 * 25 24 23 50 50 H 1.08007 * 119.95765 * 179.97438 * 26 25 24 51 51 H 1.07994 * 120.04261 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8851 0.0000 7 6 6.1199 4.3276 0.0000 8 1 5.6852 4.8666 -0.8419 9 6 5.7151 5.0116 1.3073 10 6 7.6448 4.3295 -0.1258 11 6 8.1368 5.7485 -0.2493 12 8 7.3459 6.6677 -0.2383 13 7 9.4560 5.9960 -0.3720 14 6 10.3401 4.9553 -0.4986 15 1 10.1255 4.0047 -0.0328 16 6 11.5113 5.1235 -1.2260 17 7 12.5029 4.2735 -1.0806 18 14 11.6770 6.5582 -2.4107 19 1 12.1300 7.7626 -1.6694 20 1 12.6709 6.2205 -3.4611 21 1 10.3617 6.8320 -3.0435 22 6 9.9231 7.3135 -0.3701 23 6 10.8648 7.7173 0.5686 24 6 11.3193 9.0210 0.5715 25 6 10.8389 9.9247 -0.3589 26 6 9.9016 9.5263 -1.2947 27 6 9.4418 8.2244 -1.3027 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 3.7169 3.3983 0.8904 38 1 3.7163 3.3994 -0.8895 39 1 5.9733 2.3716 -0.8901 40 1 5.9732 2.3709 0.8897 41 1 6.1498 4.4726 2.1491 42 1 6.0781 6.0394 1.3071 43 1 4.6289 5.0103 1.3968 44 1 7.9369 3.7652 -1.0113 45 1 8.0829 3.8688 0.7596 46 1 13.3210 4.3912 -1.5883 47 1 11.2401 7.0123 1.2956 48 1 12.0515 9.3354 1.3005 49 1 11.1959 10.9440 -0.3540 50 1 9.5283 10.2347 -2.0195 51 1 8.7096 7.9141 -2.0334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727667442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:39 Heat of formation + Delta-G solvation = -40.953189 kcal Electronic energy + Delta-G solvation = -26602.922717 eV Core-core repulsion = 23080.060228 eV Total energy + Delta-G solvation = -3522.862489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.92299 -38.08650 -36.96090 -35.45154 -34.75388 -32.21727 -32.05279 -30.29975 -29.61304 -28.14096 -26.97472 -25.01885 -24.46437 -22.33086 -21.91262 -21.28675 -21.01058 -19.66303 -18.87533 -17.80806 -16.29309 -16.04746 -15.86706 -15.44826 -14.98438 -14.73179 -14.31779 -14.16079 -13.93894 -13.82347 -13.53632 -13.34443 -12.94630 -12.83374 -12.73742 -12.52844 -12.37101 -12.24919 -11.95219 -11.75964 -11.51348 -11.33169 -11.11038 -11.04669 -10.99109 -10.93126 -10.80316 -10.62292 -10.55416 -10.49577 -10.21210 -10.14803 -10.10787 -9.91746 -9.32601 -8.76012 -8.46498 -8.22083 -7.55966 -6.53861 -4.15863 1.91946 2.04722 3.18779 3.30055 3.35319 3.61631 4.16213 4.20213 4.43709 4.58127 4.73657 4.89609 4.99936 5.04722 5.16114 5.21325 5.31093 5.45630 5.48314 5.51255 5.55375 5.56749 5.59374 5.68885 5.76172 5.81432 5.85255 5.86833 5.96364 6.03688 6.06599 6.07386 6.09768 6.15312 6.20202 6.20924 6.27038 6.34924 6.36583 6.44288 6.45828 6.60415 6.65391 6.83444 6.91111 6.96340 7.09651 7.18099 7.29718 7.63038 7.94758 8.21046 8.81600 9.22177 9.52920 10.54214 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020437 B = 0.002657 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.766392 B =10537.442442 C =11291.741130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.075 4.075 8 H 0.072 0.928 9 C -0.150 4.150 10 C -0.115 4.115 11 C 0.486 3.514 12 O -0.575 6.575 13 N -0.426 5.426 14 C -0.351 4.351 15 H 0.114 0.886 16 C 0.075 3.925 17 N -0.859 5.859 18 Si 0.861 3.139 19 H -0.253 1.253 20 H -0.294 1.294 21 H -0.259 1.259 22 C 0.155 3.845 23 C -0.116 4.116 24 C -0.115 4.115 25 C -0.145 4.145 26 C -0.119 4.119 27 C -0.121 4.121 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.277 0.723 47 H 0.127 0.873 48 H 0.117 0.883 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.850 -2.184 2.051 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.152 4.152 7 C -0.094 4.094 8 H 0.090 0.910 9 C -0.207 4.207 10 C -0.155 4.155 11 C 0.278 3.722 12 O -0.458 6.458 13 N -0.141 5.141 14 C -0.476 4.476 15 H 0.131 0.869 16 C -0.133 4.133 17 N -0.494 5.494 18 Si 0.688 3.312 19 H -0.177 1.177 20 H -0.221 1.221 21 H -0.184 1.184 22 C 0.062 3.938 23 C -0.136 4.136 24 C -0.134 4.134 25 C -0.163 4.163 26 C -0.138 4.138 27 C -0.141 4.141 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.145 0.855 48 H 0.135 0.865 49 H 0.131 0.869 50 H 0.134 0.866 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.059 -1.872 2.019 13.346 hybrid contribution 0.529 0.450 -0.721 1.001 sum -12.530 -1.422 1.298 12.677 Atomic orbital electron populations 1.21785 0.96148 1.01375 1.01740 1.21551 0.95620 0.97271 1.01928 1.21636 0.95873 0.96381 1.01937 1.21625 0.94875 0.97384 1.01927 1.21636 0.95877 0.96098 1.02065 1.21655 0.94884 0.96787 1.01891 1.20896 0.94236 0.95013 0.99221 0.90961 1.21960 1.00017 1.02538 0.96177 1.21470 0.95144 0.94803 1.04050 1.20642 0.81375 0.91324 0.78829 1.90538 1.54458 1.46827 1.54000 1.41621 1.05942 1.02981 1.63595 1.19176 1.01175 0.92869 1.34420 0.86863 1.25215 0.94788 0.97035 0.96264 1.69710 1.03916 1.36896 1.38842 0.87149 0.79026 0.83271 0.81800 1.17686 1.22115 1.18384 1.17770 0.95870 0.85830 0.94356 1.21140 0.98754 0.95799 0.97925 1.20877 1.00033 0.93304 0.99146 1.20921 0.99216 0.99083 0.97114 1.20854 0.98204 0.95488 0.99263 1.21142 1.00957 0.93755 0.98245 0.92979 0.92841 0.92825 0.92128 0.92145 0.92163 0.92149 0.92140 0.92169 0.91858 0.92223 0.92076 0.92132 0.93836 0.90600 0.93579 0.89086 0.89768 0.91293 0.85485 0.86517 0.86868 0.86649 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.13 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.12 -1.05 5.21 -26.73 -0.14 -1.19 16 4 C -0.12 -1.17 5.21 -26.74 -0.14 -1.31 16 5 C -0.12 -1.33 4.97 -26.73 -0.13 -1.47 16 6 C -0.11 -1.47 4.68 -26.73 -0.13 -1.60 16 7 C -0.07 -1.18 2.04 -90.62 -0.18 -1.37 16 8 H 0.07 1.23 7.96 -51.93 -0.41 0.82 16 9 C -0.15 -2.35 8.69 37.16 0.32 -2.03 16 10 C -0.11 -2.13 3.72 -27.88 -0.10 -2.23 16 11 C 0.49 10.93 7.20 -10.98 -0.08 10.85 16 12 O -0.58 -13.66 12.97 5.56 0.07 -13.59 16 13 N -0.43 -10.25 2.49 -58.98 -0.15 -10.40 16 14 C -0.35 -8.96 9.04 -14.94 -0.13 -9.09 16 15 H 0.11 2.94 7.04 -52.48 -0.37 2.57 16 16 C 0.08 1.99 5.23 -17.49 -0.09 1.90 16 17 N -0.86 -23.55 13.96 55.49 0.77 -22.77 16 18 Si 0.86 20.94 23.48 -169.99 -3.99 16.94 16 19 H -0.25 -6.02 5.48 56.52 0.31 -5.71 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.35 6.08 56.52 0.34 -6.01 16 22 C 0.15 3.61 2.48 -83.70 -0.21 3.40 16 23 C -0.12 -2.52 8.05 -39.37 -0.32 -2.83 16 24 C -0.11 -2.14 9.49 -39.61 -0.38 -2.51 16 25 C -0.14 -2.55 9.84 -39.53 -0.39 -2.94 16 26 C -0.12 -2.26 9.83 -39.61 -0.39 -2.65 16 27 C -0.12 -2.67 5.68 -39.37 -0.22 -2.89 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.41 5.95 -51.93 -0.31 1.10 16 43 H 0.05 0.63 6.57 -51.93 -0.34 0.29 16 44 H 0.09 1.68 8.03 -51.93 -0.42 1.26 16 45 H 0.08 1.52 7.81 -51.93 -0.41 1.11 16 46 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.13 2.75 8.06 -52.48 -0.42 2.33 16 48 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 49 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 50 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 51 H 0.12 2.70 7.68 -52.49 -0.40 2.30 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -28.34 392.73 -9.34 -37.69 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -9.47 Total: 6.05 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -2.50 Total: -19.84 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.63 Total: -33.17 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.07 Total: -13.59 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -3.99 Total: 16.94 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.34 -9.34 -37.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727667442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.265 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds