Wall clock time and date at job start Tue Mar 31 2020 11:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38286 * 119.93095 * 2 1 4 4 C 1.38110 * 120.06803 * 180.02562 * 3 2 1 5 5 C 1.38863 * 119.93160 * 0.23306 * 4 3 2 6 6 N 1.39931 * 120.07333 * 179.72534 * 5 4 3 7 7 C 1.46503 * 119.99993 * 58.70546 * 6 5 4 8 8 C 1.50702 * 109.46855 * 90.00232 * 7 6 5 9 9 H 1.08004 * 119.99981 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99983 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99728 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00037 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47121 * 90.00202 * 12 10 8 14 14 H 1.48504 * 109.47080 * 210.00248 * 12 10 8 15 15 H 1.48503 * 109.47311 * 329.99969 * 12 10 8 16 16 C 1.34776 * 120.00115 * 238.71504 * 6 5 4 17 17 O 1.21282 * 119.99992 * 5.09706 * 16 6 5 18 18 C 1.50698 * 120.00021 * 185.10004 * 16 6 5 19 19 C 1.53002 * 109.47117 * 179.97438 * 18 16 6 20 20 H 1.09001 * 109.47178 * 305.00072 * 19 18 16 21 21 C 1.53003 * 109.46777 * 65.00333 * 19 18 16 22 22 C 1.53003 * 109.47133 * 185.00031 * 19 18 16 23 23 C 1.53000 * 109.47085 * 66.69805 * 22 19 18 24 24 C 1.53002 * 109.46831 * 65.51153 * 23 22 19 25 25 C 1.52999 * 109.47318 * 185.50898 * 23 22 19 26 26 C 1.38874 * 119.86095 * 359.49437 * 5 4 3 27 27 C 1.38112 * 119.92283 * 0.50239 * 26 5 4 28 28 H 1.08998 * 109.47052 * 89.99617 * 1 2 3 29 29 H 1.08994 * 109.47058 * 210.00193 * 1 2 3 30 30 H 1.09009 * 109.46832 * 329.99919 * 1 2 3 31 31 H 1.07995 * 119.96339 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.03207 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47266 * 210.00201 * 7 6 5 34 34 H 1.08999 * 109.47047 * 330.01033 * 7 6 5 35 35 H 0.96994 * 119.99575 * 179.97438 * 11 10 8 36 36 H 1.08991 * 109.47247 * 299.99879 * 18 16 6 37 37 H 1.09005 * 109.47200 * 59.99489 * 18 16 6 38 38 H 1.08997 * 109.46598 * 184.68802 * 21 19 18 39 39 H 1.08997 * 109.47136 * 304.68518 * 21 19 18 40 40 H 1.09003 * 109.47156 * 64.68809 * 21 19 18 41 41 H 1.08998 * 109.47307 * 186.69990 * 22 19 18 42 42 H 1.09008 * 109.46987 * 306.70468 * 22 19 18 43 43 H 1.09002 * 109.47316 * 305.51524 * 23 22 19 44 44 H 1.08997 * 109.47113 * 184.10623 * 24 23 22 45 45 H 1.09006 * 109.47309 * 304.10373 * 24 23 22 46 46 H 1.09003 * 109.47276 * 64.09964 * 24 23 22 47 47 H 1.08997 * 109.46908 * 60.00342 * 25 23 22 48 48 H 1.08997 * 109.47299 * 180.02562 * 25 23 22 49 49 H 1.09003 * 109.46914 * 300.00518 * 25 23 22 50 50 H 1.08002 * 120.03721 * 180.23366 * 26 5 4 51 51 H 1.08008 * 119.95951 * 179.74642 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2017 -0.0005 5 6 4.2738 0.0000 -0.0060 6 7 5.6731 -0.0001 -0.0123 7 6 6.4106 0.6568 1.0697 8 6 6.6668 -0.3335 2.1764 9 1 6.3157 -1.3506 2.0829 10 6 7.3493 0.0589 3.3084 11 7 7.5732 -0.8055 4.2739 12 14 7.9558 1.8182 3.4704 13 1 6.9064 2.6459 4.1177 14 1 9.1874 1.8428 4.2999 15 1 8.2558 2.3646 2.1226 16 6 6.3424 -0.6044 -1.0140 17 8 5.7353 -1.0672 -1.9564 18 6 7.8452 -0.7051 -0.9630 19 6 8.3504 -1.4309 -2.2115 20 1 7.8527 -2.3969 -2.2966 21 6 8.0431 -0.5878 -3.4508 22 6 9.8615 -1.6436 -2.1013 23 6 10.1572 -2.6215 -0.9623 24 6 9.5901 -3.9987 -1.3125 25 6 11.6702 -2.7289 -0.7621 26 6 3.5780 -1.2019 -0.0002 27 6 2.1969 -1.1983 0.0004 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6553 2.1327 0.0004 32 1 4.1164 2.1381 -0.0010 33 1 7.3613 1.0289 0.6879 34 1 5.8232 1.4897 1.4563 35 1 8.0537 -0.5295 5.0700 36 1 8.2753 0.2957 -0.9250 37 1 8.1421 -1.2620 -0.0742 38 1 8.3273 -1.1409 -4.3460 39 1 6.9764 -0.3661 -3.4840 40 1 8.6067 0.3441 -3.4052 41 1 10.2403 -2.0520 -3.0383 42 1 10.3488 -0.6901 -1.8972 43 1 9.6938 -2.2606 -0.0441 44 1 9.7361 -4.6763 -0.4714 45 1 8.5250 -3.9094 -1.5265 46 1 10.1051 -4.3915 -2.1893 47 1 12.0742 -1.7477 -0.5126 48 1 11.8808 -3.4258 0.0490 49 1 12.1335 -3.0898 -1.6804 50 1 4.1163 -2.1382 -0.0006 51 1 1.6552 -2.1327 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727675022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:38 Heat of formation + Delta-G solvation = -41.223242 kcal Electronic energy + Delta-G solvation = -27614.969189 eV Core-core repulsion = 24092.094990 eV Total energy + Delta-G solvation = -3522.874199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.10293 -38.52636 -37.08969 -35.31332 -33.29689 -32.70564 -31.54123 -30.56817 -28.16795 -27.93259 -27.00528 -26.34235 -25.54631 -22.99363 -21.90743 -21.64411 -20.56701 -19.47845 -18.42905 -17.11700 -16.84085 -16.24852 -15.39039 -15.04972 -14.84380 -14.65933 -14.24114 -14.07755 -13.98505 -13.54119 -13.43196 -13.27955 -13.05966 -12.77013 -12.53257 -12.40324 -12.19200 -12.06129 -12.02147 -11.84654 -11.67325 -11.56206 -11.38518 -11.23407 -11.03709 -10.97623 -10.84096 -10.69970 -10.63239 -10.35558 -10.24203 -10.03100 -9.98116 -9.69534 -9.12409 -8.75810 -8.62066 -8.51773 -7.47567 -6.24983 -4.26817 1.70118 1.82685 3.14598 3.21136 3.23675 3.25484 3.70753 4.16870 4.22858 4.93178 5.02030 5.05070 5.10752 5.14328 5.16989 5.27879 5.35907 5.40359 5.55327 5.57376 5.71144 5.72810 5.78833 5.79161 5.84657 5.86925 5.88781 5.97704 5.99307 6.05418 6.05562 6.09514 6.11259 6.18385 6.27328 6.36580 6.37821 6.42423 6.48164 6.48530 6.56522 6.67619 6.70786 6.76252 6.78882 6.93379 6.95446 7.15438 7.38043 7.59637 8.01575 8.33422 8.78093 8.87210 9.33405 10.87481 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009331 B = 0.005043 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.977866 B = 5550.689351 C = 7471.344079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C -0.111 4.111 4 C -0.129 4.129 5 C 0.173 3.827 6 N -0.555 5.555 7 C 0.209 3.791 8 C -0.539 4.539 9 H 0.079 0.921 10 C 0.079 3.921 11 N -0.888 5.888 12 Si 0.868 3.132 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.264 1.264 16 C 0.524 3.476 17 O -0.551 6.551 18 C -0.133 4.133 19 C -0.077 4.077 20 H 0.079 0.921 21 C -0.151 4.151 22 C -0.107 4.107 23 C -0.105 4.105 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.102 4.102 27 C -0.109 4.109 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.039 0.961 34 H 0.031 0.969 35 H 0.267 0.733 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.048 0.952 50 H 0.120 0.880 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 0.995 -10.234 10.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.109 4.109 3 C -0.129 4.129 4 C -0.149 4.149 5 C 0.081 3.919 6 N -0.282 5.282 7 C 0.089 3.911 8 C -0.578 4.578 9 H 0.097 0.903 10 C -0.125 4.125 11 N -0.525 5.525 12 Si 0.694 3.306 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.188 1.188 16 C 0.314 3.686 17 O -0.430 6.430 18 C -0.173 4.173 19 C -0.096 4.096 20 H 0.097 0.903 21 C -0.208 4.208 22 C -0.144 4.144 23 C -0.124 4.124 24 C -0.205 4.205 25 C -0.202 4.202 26 C -0.122 4.122 27 C -0.128 4.128 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.138 0.862 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.797 0.740 -10.530 10.707 hybrid contribution 0.515 0.954 0.610 1.244 sum -1.282 1.694 -9.920 10.144 Atomic orbital electron populations 1.20705 0.91640 1.02315 1.01722 1.19778 0.95678 0.93221 1.02227 1.20736 0.93406 0.97272 1.01533 1.21069 0.94225 0.97209 1.02421 1.17590 0.83411 0.93034 0.97822 1.45711 1.03289 1.54821 1.24348 1.19945 0.91718 0.93879 0.85551 1.21287 1.37367 0.98483 1.00618 0.90286 1.24828 0.95206 0.97114 0.95312 1.69882 1.40495 1.34562 1.07559 0.86975 0.79118 0.85516 0.78945 1.19878 1.20736 1.18835 1.20717 0.90493 0.76478 0.80899 1.90598 1.70610 1.48283 1.33537 1.21804 0.91568 1.02990 1.00924 1.20977 0.94983 0.99791 0.93858 0.90293 1.21940 1.03195 0.98884 0.96750 1.21686 0.95525 0.99067 0.98169 1.21225 0.95797 0.95743 0.99606 1.21879 1.01281 0.96502 1.00804 1.21817 0.95820 1.01507 1.01035 1.21123 0.93992 0.97562 0.99500 1.20805 0.93559 0.97310 1.01085 0.91736 0.91885 0.91945 0.86335 0.86211 0.94322 0.95095 0.92314 0.89512 0.87070 0.93496 0.90804 0.93734 0.92184 0.92082 0.90011 0.92962 0.92203 0.93305 0.92849 0.92867 0.93266 0.86230 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.11 -1.63 5.88 -104.59 -0.62 -2.24 16 3 C -0.11 -1.71 9.69 -39.61 -0.38 -2.09 16 4 C -0.13 -2.31 9.35 -39.40 -0.37 -2.68 16 5 C 0.17 3.50 5.09 -83.69 -0.43 3.08 16 6 N -0.56 -11.64 2.55 -114.74 -0.29 -11.93 16 7 C 0.21 4.62 3.92 -5.19 -0.02 4.60 16 8 C -0.54 -14.03 9.70 -34.44 -0.33 -14.36 16 9 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 10 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.89 -25.42 13.96 55.43 0.77 -24.65 16 12 Si 0.87 19.58 27.47 -169.99 -4.67 14.91 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 16 C 0.52 10.52 7.15 -10.99 -0.08 10.44 16 17 O -0.55 -11.80 13.43 5.56 0.07 -11.73 16 18 C -0.13 -2.31 3.74 -27.88 -0.10 -2.42 16 19 C -0.08 -1.16 1.92 -90.62 -0.17 -1.33 16 20 H 0.08 1.28 6.04 -51.93 -0.31 0.96 16 21 C -0.15 -2.17 8.98 37.16 0.33 -1.84 16 22 C -0.11 -1.38 4.13 -26.73 -0.11 -1.49 16 23 C -0.11 -1.41 2.81 -90.62 -0.25 -1.66 16 24 C -0.15 -1.90 9.05 37.16 0.34 -1.57 16 25 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 26 C -0.10 -1.98 9.07 -39.39 -0.36 -2.34 16 27 C -0.11 -1.78 9.69 -39.61 -0.38 -2.17 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.06 0.62 8.08 -51.92 -0.42 0.20 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.12 1.98 7.93 -52.48 -0.42 1.56 16 33 H 0.04 0.82 5.54 -51.93 -0.29 0.53 16 34 H 0.03 0.68 6.90 -51.93 -0.36 0.32 16 35 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 36 H 0.09 1.42 7.25 -51.93 -0.38 1.04 16 37 H 0.11 2.09 6.08 -51.93 -0.32 1.77 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.24 5.88 -51.93 -0.31 0.94 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.08 1.27 6.30 -51.93 -0.33 0.95 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.83 6.28 -51.93 -0.33 0.50 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 51 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 399.32 15.07 6.02 6.02 Total: -1.00 -29.12 399.32 -9.38 -38.51 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.95 Total: 7.12 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -2.34 Total: -18.24 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.48 Total: -36.58 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.67 Total: 14.91 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.12 -9.38 -38.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727675022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.715 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds