Wall clock time and date at job start Tue Mar 31 2020 11:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38286 * 119.93095 * 2 1 4 4 C 1.38110 * 120.06803 * 180.02562 * 3 2 1 5 5 C 1.38863 * 119.93160 * 0.23306 * 4 3 2 6 6 N 1.39931 * 120.07333 * 179.72534 * 5 4 3 7 7 C 1.46503 * 119.99993 * 58.70546 * 6 5 4 8 8 C 1.50702 * 109.46855 * 90.00232 * 7 6 5 9 9 H 1.08004 * 119.99981 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99983 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99728 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00037 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47121 * 90.00202 * 12 10 8 14 14 H 1.48504 * 109.47080 * 210.00248 * 12 10 8 15 15 H 1.48503 * 109.47311 * 329.99969 * 12 10 8 16 16 C 1.34776 * 120.00115 * 238.71504 * 6 5 4 17 17 O 1.21282 * 119.99992 * 5.09706 * 16 6 5 18 18 C 1.50698 * 120.00021 * 185.10004 * 16 6 5 19 19 C 1.53002 * 109.47117 * 179.97438 * 18 16 6 20 20 H 1.09001 * 109.47178 * 305.00072 * 19 18 16 21 21 C 1.53003 * 109.46777 * 65.00333 * 19 18 16 22 22 C 1.53003 * 109.47133 * 185.00031 * 19 18 16 23 23 C 1.53000 * 109.47085 * 66.69805 * 22 19 18 24 24 C 1.53002 * 109.46831 * 65.51153 * 23 22 19 25 25 C 1.52999 * 109.47318 * 185.50898 * 23 22 19 26 26 C 1.38874 * 119.86095 * 359.49437 * 5 4 3 27 27 C 1.38112 * 119.92283 * 0.50239 * 26 5 4 28 28 H 1.08998 * 109.47052 * 89.99617 * 1 2 3 29 29 H 1.08994 * 109.47058 * 210.00193 * 1 2 3 30 30 H 1.09009 * 109.46832 * 329.99919 * 1 2 3 31 31 H 1.07995 * 119.96339 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.03207 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47266 * 210.00201 * 7 6 5 34 34 H 1.08999 * 109.47047 * 330.01033 * 7 6 5 35 35 H 0.96994 * 119.99575 * 179.97438 * 11 10 8 36 36 H 1.08991 * 109.47247 * 299.99879 * 18 16 6 37 37 H 1.09005 * 109.47200 * 59.99489 * 18 16 6 38 38 H 1.08997 * 109.46598 * 184.68802 * 21 19 18 39 39 H 1.08997 * 109.47136 * 304.68518 * 21 19 18 40 40 H 1.09003 * 109.47156 * 64.68809 * 21 19 18 41 41 H 1.08998 * 109.47307 * 186.69990 * 22 19 18 42 42 H 1.09008 * 109.46987 * 306.70468 * 22 19 18 43 43 H 1.09002 * 109.47316 * 305.51524 * 23 22 19 44 44 H 1.08997 * 109.47113 * 184.10623 * 24 23 22 45 45 H 1.09006 * 109.47309 * 304.10373 * 24 23 22 46 46 H 1.09003 * 109.47276 * 64.09964 * 24 23 22 47 47 H 1.08997 * 109.46908 * 60.00342 * 25 23 22 48 48 H 1.08997 * 109.47299 * 180.02562 * 25 23 22 49 49 H 1.09003 * 109.46914 * 300.00518 * 25 23 22 50 50 H 1.08002 * 120.03721 * 180.23366 * 26 5 4 51 51 H 1.08008 * 119.95951 * 179.74642 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2017 -0.0005 5 6 4.2738 0.0000 -0.0060 6 7 5.6731 -0.0001 -0.0123 7 6 6.4106 0.6568 1.0697 8 6 6.6668 -0.3335 2.1764 9 1 6.3157 -1.3506 2.0829 10 6 7.3493 0.0589 3.3084 11 7 7.5732 -0.8055 4.2739 12 14 7.9558 1.8182 3.4704 13 1 6.9064 2.6459 4.1177 14 1 9.1874 1.8428 4.2999 15 1 8.2558 2.3646 2.1226 16 6 6.3424 -0.6044 -1.0140 17 8 5.7353 -1.0672 -1.9564 18 6 7.8452 -0.7051 -0.9630 19 6 8.3504 -1.4309 -2.2115 20 1 7.8527 -2.3969 -2.2966 21 6 8.0431 -0.5878 -3.4508 22 6 9.8615 -1.6436 -2.1013 23 6 10.1572 -2.6215 -0.9623 24 6 9.5901 -3.9987 -1.3125 25 6 11.6702 -2.7289 -0.7621 26 6 3.5780 -1.2019 -0.0002 27 6 2.1969 -1.1983 0.0004 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6553 2.1327 0.0004 32 1 4.1164 2.1381 -0.0010 33 1 7.3613 1.0289 0.6879 34 1 5.8232 1.4897 1.4563 35 1 8.0537 -0.5295 5.0700 36 1 8.2753 0.2957 -0.9250 37 1 8.1421 -1.2620 -0.0742 38 1 8.3273 -1.1409 -4.3460 39 1 6.9764 -0.3661 -3.4840 40 1 8.6067 0.3441 -3.4052 41 1 10.2403 -2.0520 -3.0383 42 1 10.3488 -0.6901 -1.8972 43 1 9.6938 -2.2606 -0.0441 44 1 9.7361 -4.6763 -0.4714 45 1 8.5250 -3.9094 -1.5265 46 1 10.1051 -4.3915 -2.1893 47 1 12.0742 -1.7477 -0.5126 48 1 11.8808 -3.4258 0.0490 49 1 12.1335 -3.0898 -1.6804 50 1 4.1163 -2.1382 -0.0006 51 1 1.6552 -2.1327 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727675022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:37 Heat of formation + Delta-G solvation = -54.167693 kcal Electronic energy + Delta-G solvation = -27615.530503 eV Core-core repulsion = 24092.094990 eV Total energy + Delta-G solvation = -3523.435513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61302 -39.85778 -38.30554 -36.92441 -34.77760 -34.37309 -32.90125 -31.90425 -29.93460 -29.31606 -28.02361 -27.44143 -26.78768 -24.74367 -23.41998 -22.94390 -21.75301 -20.73033 -19.82968 -19.12596 -18.35588 -17.84898 -16.86384 -16.39274 -16.22452 -15.97246 -15.90471 -15.29206 -15.25327 -14.82294 -14.68080 -14.55390 -14.39325 -14.32218 -13.88049 -13.77184 -13.70234 -13.41463 -13.04575 -13.01747 -12.93336 -12.81913 -12.70774 -12.54124 -12.44270 -12.34176 -12.17932 -12.10145 -11.94452 -11.86707 -11.73790 -11.39447 -11.20662 -11.15100 -10.83262 -10.65720 -10.13327 -9.87053 -8.97019 -8.32073 -6.39941 0.34516 0.47291 1.37815 1.37843 1.47860 1.66950 2.17533 2.31618 2.81142 3.01628 3.69224 3.83256 3.89168 3.93355 4.04282 4.07861 4.13817 4.18294 4.32714 4.44211 4.47729 4.51357 4.54705 4.63065 4.71396 4.75155 4.77272 4.80333 4.81688 4.84846 4.90006 4.91068 5.00618 5.02547 5.10367 5.12518 5.13851 5.16690 5.19303 5.29061 5.36446 5.39696 5.41504 5.51954 5.54528 5.60372 5.60853 5.67206 5.77114 6.09782 6.20877 6.51147 6.64069 7.20096 7.30428 8.84247 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009331 B = 0.005043 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.977866 B = 5550.689351 C = 7471.344079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.102 4.102 3 C -0.107 4.107 4 C -0.140 4.140 5 C 0.132 3.868 6 N -0.560 5.560 7 C 0.219 3.781 8 C -0.538 4.538 9 H 0.026 0.974 10 C 0.023 3.977 11 N -0.939 5.939 12 Si 0.937 3.063 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.233 1.233 16 C 0.516 3.484 17 O -0.569 6.569 18 C -0.127 4.127 19 C -0.072 4.072 20 H 0.060 0.940 21 C -0.144 4.144 22 C -0.098 4.098 23 C -0.108 4.108 24 C -0.146 4.146 25 C -0.140 4.140 26 C -0.131 4.131 27 C -0.115 4.115 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.157 0.843 32 H 0.132 0.868 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.269 0.731 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.041 0.959 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.068 0.932 50 H 0.091 0.909 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 3.629 -11.655 12.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.103 4.103 3 C -0.125 4.125 4 C -0.159 4.159 5 C 0.041 3.959 6 N -0.287 5.287 7 C 0.098 3.902 8 C -0.576 4.576 9 H 0.044 0.956 10 C -0.176 4.176 11 N -0.578 5.578 12 Si 0.759 3.241 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.156 1.156 16 C 0.307 3.693 17 O -0.450 6.450 18 C -0.167 4.167 19 C -0.091 4.091 20 H 0.078 0.922 21 C -0.201 4.201 22 C -0.135 4.135 23 C -0.126 4.126 24 C -0.203 4.203 25 C -0.198 4.198 26 C -0.151 4.151 27 C -0.133 4.133 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.174 0.826 32 H 0.149 0.851 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.110 0.890 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.084 3.369 -11.974 12.612 hybrid contribution 0.437 0.001 1.055 1.142 sum -1.646 3.370 -10.919 11.545 Atomic orbital electron populations 1.20788 0.88241 1.03826 1.03237 1.20297 0.98057 0.92281 0.99638 1.21209 0.92557 0.99086 0.99646 1.21318 0.95551 0.96585 1.02486 1.17972 0.83230 0.94318 1.00375 1.45727 1.03992 1.54945 1.23986 1.19755 0.92765 0.92874 0.84765 1.21366 1.36894 0.97069 1.02319 0.95606 1.25742 0.95215 1.02083 0.94578 1.70048 1.41988 1.37310 1.08500 0.85872 0.78467 0.79336 0.80412 1.19198 1.20608 1.15627 1.21231 0.91571 0.75961 0.80523 1.90570 1.71281 1.48884 1.34215 1.21813 0.89752 1.03729 1.01393 1.20943 0.96436 0.98668 0.93046 0.92165 1.21857 1.01600 0.99729 0.96920 1.21631 0.93616 0.99507 0.98778 1.21209 0.96964 0.95920 0.98529 1.21861 1.00412 0.96505 1.01522 1.21780 0.94290 1.01793 1.01907 1.21136 0.95605 0.96533 1.01852 1.21111 0.92356 0.99340 1.00506 0.90025 0.90890 0.90027 0.82564 0.85059 0.92574 0.94131 0.92205 0.88065 0.89203 0.91726 0.93558 0.92067 0.90075 0.91029 0.93205 0.93416 0.93977 0.91187 0.92478 0.93235 0.91341 0.89031 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 10.01 71.24 0.71 -1.22 16 2 C -0.10 -2.85 5.88 -19.84 -0.12 -2.97 16 3 C -0.11 -3.03 9.69 22.25 0.22 -2.82 16 4 C -0.14 -4.89 9.35 22.39 0.21 -4.68 16 5 C 0.13 5.54 5.09 38.15 0.19 5.74 16 6 N -0.56 -24.46 2.55 -635.31 -1.62 -26.08 16 7 C 0.22 9.81 3.92 85.63 0.34 10.14 16 8 C -0.54 -29.38 9.70 25.60 0.25 -29.13 16 9 H 0.03 1.64 8.06 -2.91 -0.02 1.61 16 10 C 0.02 1.26 5.47 84.65 0.46 1.72 16 11 N -0.94 -56.10 13.96 21.45 0.30 -55.80 16 12 Si 0.94 39.97 27.47 68.60 1.88 41.85 16 13 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 14 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.23 -8.76 6.54 99.48 0.65 -8.10 16 16 C 0.52 21.77 7.15 87.66 0.63 22.40 16 17 O -0.57 -25.73 13.43 -3.03 -0.04 -25.77 16 18 C -0.13 -4.57 3.74 29.85 0.11 -4.46 16 19 C -0.07 -2.18 1.92 -10.79 -0.02 -2.20 16 20 H 0.06 2.04 6.04 -2.39 -0.01 2.03 16 21 C -0.14 -4.02 8.98 71.98 0.65 -3.37 16 22 C -0.10 -2.40 4.13 30.60 0.13 -2.27 16 23 C -0.11 -2.90 2.81 -10.79 -0.03 -2.93 16 24 C -0.15 -3.85 9.05 71.98 0.65 -3.20 16 25 C -0.14 -3.15 9.19 71.98 0.66 -2.49 16 26 C -0.13 -5.42 9.07 22.39 0.20 -5.22 16 27 C -0.11 -3.77 9.69 22.25 0.22 -3.55 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 30 H 0.08 1.24 8.08 -2.38 -0.02 1.22 16 31 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.13 4.16 7.93 -2.91 -0.02 4.13 16 33 H 0.06 2.31 5.54 -2.39 -0.01 2.30 16 34 H 0.04 1.75 6.90 -2.39 -0.02 1.73 16 35 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 36 H 0.10 3.27 7.25 -2.39 -0.02 3.26 16 37 H 0.09 3.63 6.08 -2.38 -0.01 3.62 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 1.56 5.88 -2.39 -0.01 1.54 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.05 1.65 6.30 -2.39 -0.02 1.64 16 44 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.04 1.24 6.28 -2.38 -0.01 1.22 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.09 4.12 8.06 -2.91 -0.02 4.10 16 51 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -68.07 399.32 6.80 -61.27 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: 0.82 Total: 35.04 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 5.45 Total: -30.50 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -1.32 Total: -81.89 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.04 Total: -25.77 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.88 Total: 41.85 kcal Total: -68.07 6.80 -61.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727675022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.103 kcal (2) G-P(sol) polarization free energy of solvation -68.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds