Wall clock time and date at job start Tue Mar 31 2020 11:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38278 * 119.92637 * 2 1 4 4 C 1.38117 * 120.06715 * 179.97438 * 3 2 1 5 5 C 1.38877 * 119.93060 * 359.97438 * 4 3 2 6 6 N 1.39919 * 120.07415 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99728 * 293.07519 * 6 5 4 8 8 C 1.50703 * 109.47243 * 269.99934 * 7 6 5 9 9 H 1.08001 * 119.99651 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00246 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00311 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00115 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46935 * 59.99970 * 12 10 8 14 14 H 1.48497 * 109.47183 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47057 * 300.00030 * 12 10 8 16 16 C 1.34776 * 120.00477 * 113.07214 * 6 5 4 17 17 O 1.21291 * 119.99384 * 4.97738 * 16 6 5 18 18 C 1.50693 * 120.00131 * 184.98012 * 16 6 5 19 19 C 1.53010 * 109.47049 * 180.02562 * 18 16 6 20 20 H 1.08998 * 109.47225 * 54.99775 * 19 18 16 21 21 C 1.53001 * 109.46903 * 294.99970 * 19 18 16 22 22 C 1.53001 * 109.46988 * 175.00174 * 19 18 16 23 23 C 1.53003 * 109.46851 * 294.37080 * 22 19 18 24 24 C 1.52998 * 109.47036 * 174.07636 * 23 22 19 25 25 C 1.53003 * 109.47348 * 294.07737 * 23 22 19 26 26 C 1.38876 * 119.85578 * 0.27085 * 5 4 3 27 27 C 1.38116 * 119.92963 * 359.43141 * 26 5 4 28 28 H 1.09008 * 109.47217 * 89.99896 * 1 2 3 29 29 H 1.09002 * 109.47491 * 210.00401 * 1 2 3 30 30 H 1.09002 * 109.47396 * 330.00265 * 1 2 3 31 31 H 1.07998 * 119.97108 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.03878 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47619 * 29.99775 * 7 6 5 34 34 H 1.09004 * 109.47200 * 149.99748 * 7 6 5 35 35 H 0.96990 * 120.00119 * 179.97438 * 11 10 8 36 36 H 1.09001 * 109.47204 * 60.00004 * 18 16 6 37 37 H 1.09000 * 109.47050 * 299.99641 * 18 16 6 38 38 H 1.09004 * 109.46884 * 295.34436 * 21 19 18 39 39 H 1.09001 * 109.46999 * 55.34302 * 21 19 18 40 40 H 1.08996 * 109.47198 * 175.34542 * 21 19 18 41 41 H 1.08998 * 109.46995 * 54.37069 * 22 19 18 42 42 H 1.08999 * 109.47020 * 174.37695 * 22 19 18 43 43 H 1.09003 * 109.47022 * 54.07999 * 23 22 19 44 44 H 1.09003 * 109.46919 * 60.00299 * 24 23 22 45 45 H 1.09001 * 109.47491 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47174 * 300.00296 * 24 23 22 47 47 H 1.08995 * 109.46919 * 305.62039 * 25 23 22 48 48 H 1.09004 * 109.46510 * 65.61318 * 25 23 22 49 49 H 1.08990 * 109.47103 * 185.61174 * 25 23 22 50 50 H 1.07998 * 120.03914 * 179.72476 * 26 5 4 51 51 H 1.08001 * 119.96512 * 180.28811 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.2739 0.0000 0.0016 6 7 5.6731 -0.0001 0.0027 7 6 6.4065 0.4966 -1.1642 8 6 6.6583 -0.6405 -2.1206 9 1 6.3076 -1.6338 -1.8828 10 6 7.3374 -0.4128 -3.2987 11 7 7.7650 0.7968 -3.5882 12 14 7.6502 -1.8225 -4.4839 13 1 6.3532 -2.3972 -4.9228 14 1 8.3935 -1.3190 -5.6668 15 1 8.4520 -2.8716 -3.8046 16 6 6.3462 -0.4570 1.0772 17 8 5.7424 -0.9513 2.0058 18 6 7.8489 -0.3538 1.1249 19 6 8.3589 -0.9413 2.4425 20 1 7.9895 -1.9608 2.5528 21 6 7.8573 -0.0881 3.6093 22 6 9.8889 -0.9506 2.4383 23 6 10.3900 -1.9140 1.3604 24 6 11.9130 -1.8140 1.2552 25 6 9.9974 -3.3451 1.7329 26 6 3.5780 -1.2018 -0.0035 27 6 2.1969 -1.1984 0.0021 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6552 2.1327 -0.0004 32 1 4.1163 2.1380 0.0001 33 1 5.8178 1.2668 -1.6625 34 1 7.3587 0.9184 -0.8424 35 1 8.2431 0.9568 -4.4167 36 1 8.1435 0.6933 1.0554 37 1 8.2778 -0.9082 0.2902 38 1 8.2931 0.9089 3.5440 39 1 6.7708 -0.0133 3.5639 40 1 8.1506 -0.5519 4.5510 41 1 10.2577 0.0533 2.2283 42 1 10.2529 -1.2751 3.4131 43 1 9.9416 -1.6520 0.4020 44 1 12.3614 -2.0760 2.2136 45 1 12.2702 -2.5006 0.4876 46 1 12.1927 -0.7944 0.9898 47 1 10.3616 -3.5727 2.7347 48 1 8.9118 -3.4415 1.7104 49 1 10.4388 -4.0404 1.0191 50 1 4.1162 -2.1382 -0.0072 51 1 1.6551 -2.1328 0.0028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727675024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:40 Heat of formation + Delta-G solvation = -57.577974 kcal Electronic energy + Delta-G solvation = -27561.658992 eV Core-core repulsion = 24038.075598 eV Total energy + Delta-G solvation = -3523.583394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.53572 -39.84145 -38.28130 -36.84557 -34.80890 -34.35607 -32.80671 -31.88429 -29.35960 -29.26930 -28.00289 -27.43613 -26.76290 -25.03098 -23.53807 -22.92454 -21.74171 -20.72823 -19.84142 -18.67210 -18.29535 -17.75914 -16.72997 -16.46023 -16.38197 -15.96243 -15.91513 -15.26914 -15.22499 -14.77818 -14.54417 -14.48366 -14.36411 -14.30343 -13.83110 -13.71269 -13.51237 -13.29471 -13.04551 -12.99332 -12.93692 -12.78769 -12.70740 -12.63948 -12.47320 -12.35808 -12.18300 -12.09742 -12.04087 -11.86612 -11.74454 -11.37543 -11.22172 -11.13937 -10.72622 -10.54375 -9.98831 -9.85989 -9.09859 -8.24254 -6.39056 0.36370 0.48287 1.37880 1.38463 1.46227 1.71112 2.22390 2.39786 2.81320 3.05633 3.74132 3.84770 3.91007 3.94825 4.05177 4.08688 4.15561 4.19533 4.35755 4.48574 4.50909 4.53722 4.58008 4.68187 4.74340 4.76505 4.82892 4.83462 4.90071 4.91117 4.94218 5.01280 5.02052 5.08030 5.11184 5.14231 5.15218 5.20171 5.21081 5.29484 5.40256 5.42768 5.52244 5.56123 5.59771 5.61033 5.67079 5.67713 5.83637 6.00368 6.18631 6.49603 6.73341 7.26854 7.37961 8.81006 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009127 B = 0.005026 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.102124 B = 5569.870911 C = 7681.783839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.099 4.099 3 C -0.110 4.110 4 C -0.138 4.138 5 C 0.129 3.871 6 N -0.566 5.566 7 C 0.258 3.742 8 C -0.547 4.547 9 H 0.046 0.954 10 C 0.028 3.972 11 N -0.916 5.916 12 Si 0.951 3.049 13 H -0.276 1.276 14 H -0.276 1.276 15 H -0.269 1.269 16 C 0.515 3.485 17 O -0.574 6.574 18 C -0.124 4.124 19 C -0.070 4.070 20 H 0.062 0.938 21 C -0.145 4.145 22 C -0.098 4.098 23 C -0.108 4.108 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.124 4.124 27 C -0.116 4.116 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.121 0.879 33 H 0.016 0.984 34 H 0.039 0.961 35 H 0.269 0.731 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.039 0.961 49 H 0.053 0.947 50 H 0.098 0.902 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.467 -1.344 9.414 9.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.158 4.158 5 C 0.039 3.961 6 N -0.293 5.293 7 C 0.138 3.862 8 C -0.585 4.585 9 H 0.064 0.936 10 C -0.173 4.173 11 N -0.554 5.554 12 Si 0.776 3.224 13 H -0.202 1.202 14 H -0.201 1.201 15 H -0.194 1.194 16 C 0.307 3.693 17 O -0.455 6.455 18 C -0.163 4.163 19 C -0.089 4.089 20 H 0.081 0.919 21 C -0.202 4.202 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.198 4.198 25 C -0.202 4.202 26 C -0.144 4.144 27 C -0.134 4.134 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.171 0.829 32 H 0.139 0.861 33 H 0.034 0.966 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.116 0.884 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.634 -1.473 9.745 10.202 hybrid contribution 0.431 -0.612 -1.236 1.445 sum -2.203 -2.085 8.509 9.033 Atomic orbital electron populations 1.20795 0.88162 1.03917 1.03218 1.20307 0.98076 0.92245 0.99307 1.21183 0.92430 0.99178 1.00082 1.21348 0.95636 0.96641 1.02142 1.17958 0.83438 0.94131 1.00595 1.45947 1.03971 1.62183 1.17244 1.19153 0.91404 0.94135 0.81504 1.21524 1.37055 0.95230 1.04690 0.93573 1.25561 0.94859 0.97955 0.98926 1.69982 1.38245 1.21579 1.25638 0.85718 0.78394 0.79717 0.78598 1.20180 1.20095 1.19392 1.21209 0.91364 0.76172 0.80576 1.90558 1.71367 1.45894 1.37709 1.21753 0.89900 1.03661 1.00990 1.20910 0.95944 0.99481 0.92530 0.91947 1.21861 1.01183 0.99478 0.97649 1.21641 0.92905 0.99681 0.99329 1.21221 0.96860 0.95754 0.98809 1.21783 0.94203 1.01711 1.02096 1.21840 1.00535 0.95971 1.01809 1.21232 0.95502 0.96658 1.01009 1.21150 0.92414 0.99286 1.00575 0.90215 0.90540 0.90061 0.82901 0.86108 0.96558 0.94287 0.92138 0.88910 0.89061 0.92422 0.93644 0.91611 0.91417 0.90104 0.92957 0.91453 0.92957 0.92686 0.91392 0.94193 0.92820 0.88363 0.83853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 10.01 71.24 0.71 -1.23 16 2 C -0.10 -2.80 5.88 -19.84 -0.12 -2.91 16 3 C -0.11 -3.31 9.69 22.25 0.22 -3.10 16 4 C -0.14 -5.17 9.65 22.39 0.22 -4.96 16 5 C 0.13 5.60 4.86 38.16 0.19 5.78 16 6 N -0.57 -25.87 2.51 -635.30 -1.59 -27.46 16 7 C 0.26 12.87 4.93 85.63 0.42 13.29 16 8 C -0.55 -29.50 9.39 25.60 0.24 -29.26 16 9 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 10 C 0.03 1.49 5.46 84.65 0.46 1.95 16 11 N -0.92 -50.73 13.29 21.45 0.28 -50.44 16 12 Si 0.95 42.60 29.54 68.60 2.03 44.62 16 13 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 14 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 16 C 0.52 22.47 7.23 87.66 0.63 23.10 16 17 O -0.57 -26.57 13.54 -3.07 -0.04 -26.62 16 18 C -0.12 -4.59 3.51 29.85 0.10 -4.48 16 19 C -0.07 -2.15 1.92 -10.79 -0.02 -2.17 16 20 H 0.06 2.12 6.29 -2.39 -0.02 2.10 16 21 C -0.14 -4.23 8.98 71.98 0.65 -3.58 16 22 C -0.10 -2.45 4.13 30.60 0.13 -2.32 16 23 C -0.11 -2.84 2.80 -10.79 -0.03 -2.87 16 24 C -0.14 -3.09 9.19 71.98 0.66 -2.42 16 25 C -0.14 -3.65 8.84 71.98 0.64 -3.01 16 26 C -0.12 -5.08 9.32 22.39 0.21 -4.87 16 27 C -0.12 -3.75 9.69 22.25 0.22 -3.53 16 28 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 30 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 31 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 32 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 33 H 0.02 0.87 7.83 -2.39 -0.02 0.85 16 34 H 0.04 1.96 6.44 -2.38 -0.02 1.94 16 35 H 0.27 14.13 8.31 -92.72 -0.77 13.36 16 36 H 0.09 3.29 7.58 -2.39 -0.02 3.27 16 37 H 0.09 3.68 6.16 -2.39 -0.01 3.67 16 38 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.04 1.60 5.88 -2.39 -0.01 1.58 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.05 1.67 6.24 -2.39 -0.01 1.66 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.04 1.14 6.75 -2.38 -0.02 1.13 16 49 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 50 H 0.10 4.27 8.06 -2.91 -0.02 4.24 16 51 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -63.21 404.79 7.07 -56.14 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.87 Total: 30.35 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 5.52 Total: -26.59 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -1.31 Total: -77.90 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.04 Total: -26.62 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -63.21 7.07 -56.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727675024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.439 kcal (2) G-P(sol) polarization free energy of solvation -63.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds