Wall clock time and date at job start Tue Mar 31 2020 11:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47401 * 2 1 4 4 C 1.38233 * 120.00147 * 269.73353 * 3 2 1 5 5 C 1.38240 * 119.99648 * 179.76529 * 4 3 2 6 6 C 1.38229 * 120.00265 * 0.50269 * 5 4 3 7 7 C 1.50693 * 120.00038 * 179.72538 * 6 5 4 8 8 H 1.09009 * 109.47253 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47384 * 60.02373 * 7 6 5 10 10 C 1.50698 * 109.47288 * 300.01934 * 7 6 5 11 11 O 1.21277 * 119.99895 * 13.61736 * 10 7 6 12 12 N 1.34776 * 119.99991 * 193.61054 * 10 7 6 13 13 C 1.46499 * 120.00071 * 3.82729 * 12 10 7 14 14 C 1.50700 * 109.47138 * 85.96672 * 13 12 10 15 15 H 1.08002 * 120.00006 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00147 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00006 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00003 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47392 * 90.00217 * 18 16 14 20 20 H 1.48502 * 109.46870 * 209.99994 * 18 16 14 21 21 H 1.48497 * 109.47165 * 329.99891 * 18 16 14 22 22 C 1.46505 * 119.99928 * 183.82481 * 12 10 7 23 23 C 1.53000 * 109.46879 * 95.48579 * 22 12 10 24 24 C 1.53001 * 109.47097 * 174.40359 * 23 22 12 25 25 C 1.52998 * 109.47165 * 294.40463 * 23 22 12 26 26 C 1.38236 * 119.99849 * 359.74799 * 6 5 4 27 27 C 1.38233 * 119.99721 * 89.99764 * 3 2 1 28 28 H 1.08998 * 109.47579 * 59.99864 * 1 2 3 29 29 H 1.09003 * 109.47342 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47042 * 299.99460 * 1 2 3 31 31 H 1.09003 * 109.47445 * 120.00600 * 2 1 3 32 32 H 1.09004 * 109.47042 * 240.00540 * 2 1 3 33 33 H 1.08001 * 120.00312 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.99741 * 180.22796 * 5 4 3 35 35 H 1.09003 * 109.46906 * 55.80595 * 9 7 6 36 36 H 1.08995 * 109.47250 * 175.80962 * 9 7 6 37 37 H 1.09001 * 109.46932 * 295.81345 * 9 7 6 38 38 H 1.09005 * 109.47211 * 205.96750 * 13 12 10 39 39 H 1.08999 * 109.46997 * 325.96628 * 13 12 10 40 40 H 0.97010 * 120.00158 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.46874 * 215.48355 * 22 12 10 42 42 H 1.08996 * 109.47138 * 335.48757 * 22 12 10 43 43 H 1.09005 * 109.47115 * 54.40650 * 23 22 12 44 44 H 1.08997 * 109.47189 * 60.00158 * 24 23 22 45 45 H 1.09002 * 109.47043 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.46977 * 299.99698 * 24 23 22 47 47 H 1.08996 * 109.47189 * 65.43007 * 25 23 22 48 48 H 1.09003 * 109.46801 * 185.42730 * 25 23 22 49 49 H 1.08995 * 109.47423 * 305.42568 * 25 23 22 50 50 H 1.08000 * 120.00395 * 179.97438 * 26 6 5 51 51 H 1.08001 * 120.00106 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1970 6 6 2.9547 4.0271 0.0001 7 6 3.4579 5.4475 0.0001 8 1 3.5794 5.7900 1.0279 9 6 2.4507 6.3455 -0.7210 10 6 4.7855 5.5102 -0.7103 11 8 5.1595 4.5711 -1.3804 12 7 5.5571 6.6098 -0.6010 13 6 5.1451 7.7096 0.2747 14 6 5.6200 7.4386 1.6790 15 1 6.1738 6.5374 1.8973 16 6 5.3476 8.3410 2.6852 17 7 4.6738 9.4386 2.4193 18 14 5.9370 8.0053 4.4257 19 1 7.2911 8.5862 4.6105 20 1 4.9967 8.6236 5.3946 21 1 5.9917 6.5393 4.6557 22 6 6.8078 6.7053 -1.3578 23 6 6.5587 7.4684 -2.6603 24 6 7.8884 7.6898 -3.3840 25 6 5.6199 6.6569 -3.5553 26 6 2.7240 3.3755 1.1972 27 6 2.2627 2.0724 1.1972 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 2.0925 1.5600 -2.1325 34 1 2.9049 3.8845 -2.1323 35 1 1.4719 6.2431 -0.2523 36 1 2.7777 7.3833 -0.6564 37 1 2.3848 6.0498 -1.7680 38 1 5.5819 8.6421 -0.0829 39 1 4.0582 7.7916 0.2683 40 1 4.4818 10.0734 3.1273 41 1 7.5526 7.2344 -0.7635 42 1 7.1709 5.7035 -1.5874 43 1 6.1027 8.4325 -2.4350 44 1 8.3444 6.7258 -3.6093 45 1 7.7110 8.2339 -4.3117 46 1 8.5572 8.2680 -2.7464 47 1 4.6413 6.5814 -3.0814 48 1 5.5189 7.1533 -4.5205 49 1 6.0308 5.6580 -3.7018 50 1 2.9044 3.8844 2.1326 51 1 2.0830 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727737875.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:01 Heat of formation + Delta-G solvation = -44.440687 kcal Electronic energy + Delta-G solvation = -27686.685351 eV Core-core repulsion = 24163.671633 eV Total energy + Delta-G solvation = -3523.013718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.94343 -38.68413 -36.05360 -34.70803 -34.09567 -32.41210 -32.01778 -30.57068 -28.36387 -27.45595 -26.79885 -25.80697 -24.42757 -23.14297 -22.43570 -22.19365 -20.51044 -19.63739 -18.18571 -16.68728 -16.39524 -15.92615 -15.43675 -15.16311 -14.74343 -14.55674 -14.30281 -14.14572 -13.65002 -13.62326 -13.48043 -13.29563 -12.94746 -12.78385 -12.53383 -12.26087 -12.19743 -11.95691 -11.89232 -11.65820 -11.48134 -11.42923 -11.26591 -11.15466 -10.99154 -10.88436 -10.85962 -10.62593 -10.54615 -10.46342 -10.37104 -10.29804 -10.04160 -9.67101 -8.91300 -8.56742 -8.47286 -8.15534 -7.63103 -6.19410 -4.26563 1.66774 1.79617 3.21451 3.29024 3.32155 3.48672 3.90393 4.19443 4.34677 4.85260 4.94810 5.12255 5.16264 5.22399 5.26026 5.30044 5.31613 5.37484 5.41229 5.55284 5.56799 5.68896 5.77175 5.80688 5.82807 5.88560 5.92562 5.99296 6.04297 6.05987 6.12393 6.15418 6.19489 6.30580 6.33913 6.36071 6.39055 6.41924 6.45979 6.54848 6.64279 6.75971 6.78807 6.84710 6.89737 7.10635 7.24243 7.37170 7.59328 7.76783 8.06665 8.39019 8.80149 9.09436 9.41599 10.86815 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.004622 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.573067 B = 6056.237749 C = 8175.449096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.093 4.093 4 C -0.126 4.126 5 C -0.076 4.076 6 C -0.060 4.060 7 C -0.074 4.074 8 H 0.117 0.883 9 C -0.137 4.137 10 C 0.527 3.473 11 O -0.566 6.566 12 N -0.593 5.593 13 C 0.230 3.770 14 C -0.538 4.538 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.123 3.877 23 C -0.112 4.112 24 C -0.141 4.141 25 C -0.135 4.135 26 C -0.109 4.109 27 C -0.125 4.125 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.265 0.735 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.042 0.958 49 H 0.056 0.944 50 H 0.122 0.878 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -9.593 -7.144 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.144 4.144 5 C -0.094 4.094 6 C -0.060 4.060 7 C -0.096 4.096 8 H 0.135 0.865 9 C -0.194 4.194 10 C 0.315 3.685 11 O -0.446 6.446 12 N -0.323 5.323 13 C 0.111 3.889 14 C -0.577 4.577 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.001 4.001 23 C -0.131 4.131 24 C -0.199 4.199 25 C -0.192 4.192 26 C -0.127 4.127 27 C -0.143 4.143 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.075 0.925 50 H 0.140 0.860 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.810 -9.881 -7.394 13.246 hybrid contribution 0.449 0.155 1.213 1.303 sum -4.361 -9.726 -6.181 12.322 Atomic orbital electron populations 1.21742 0.95069 1.01228 1.02217 1.20490 0.95892 0.93165 1.02382 1.19768 1.00247 0.95882 0.93368 1.20905 1.01358 0.95098 0.97041 1.20912 0.96366 0.94243 0.97838 1.19515 0.98274 0.95015 0.93214 1.20275 0.93207 0.92705 1.03365 0.86519 1.21808 0.98141 1.00047 0.99448 1.20166 0.85880 0.81922 0.80536 1.90586 1.74089 1.36838 1.43130 1.48129 1.21147 1.19047 1.43958 1.19583 0.96929 0.84354 0.88063 1.21526 1.36359 1.06719 0.93095 0.92191 1.24916 0.94836 0.94802 0.99101 1.69918 1.39235 1.10222 1.33479 0.86563 0.78698 0.78664 0.83997 1.20533 1.21033 1.19750 1.21360 0.86961 1.00605 0.91173 1.21499 0.96119 0.99770 0.95761 1.21750 0.97024 1.01292 0.99859 1.21730 0.99637 0.99795 0.98050 1.21093 0.99180 0.94697 0.97743 1.20865 1.01381 0.94910 0.97138 0.92626 0.92799 0.92592 0.91412 0.91417 0.86814 0.86301 0.91960 0.90541 0.92968 0.94751 0.93567 0.92538 0.90972 0.90785 0.91094 0.92880 0.93002 0.92688 0.93068 0.93890 0.92528 0.86005 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 37.16 0.37 -0.98 16 2 C -0.08 -0.87 6.06 -27.89 -0.17 -1.03 16 3 C -0.09 -1.27 5.13 -104.63 -0.54 -1.80 16 4 C -0.13 -1.84 9.70 -39.58 -0.38 -2.22 16 5 C -0.08 -1.25 7.88 -39.58 -0.31 -1.56 16 6 C -0.06 -1.05 4.54 -104.63 -0.47 -1.52 16 7 C -0.07 -1.39 2.07 -92.93 -0.19 -1.58 16 8 H 0.12 2.39 6.69 -51.92 -0.35 2.04 16 9 C -0.14 -2.25 8.67 37.16 0.32 -1.93 16 10 C 0.53 10.78 5.50 -10.99 -0.06 10.72 16 11 O -0.57 -12.33 13.47 5.56 0.07 -12.25 16 12 N -0.59 -12.21 2.29 -175.06 -0.40 -12.61 16 13 C 0.23 5.30 4.80 -5.19 -0.02 5.27 16 14 C -0.54 -13.77 8.75 -34.44 -0.30 -14.07 16 15 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -23.99 13.29 55.43 0.74 -23.26 16 18 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.12 2.26 4.94 -4.04 -0.02 2.24 16 23 C -0.11 -1.76 3.12 -90.62 -0.28 -2.05 16 24 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 25 C -0.13 -2.10 8.14 37.16 0.30 -1.79 16 26 C -0.11 -1.79 9.67 -39.58 -0.38 -2.17 16 27 C -0.12 -1.80 9.70 -39.58 -0.38 -2.19 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.98 7.23 -52.49 -0.38 1.60 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.33 5.81 -51.93 -0.30 1.03 16 37 H 0.05 0.80 7.54 -51.93 -0.39 0.41 16 38 H 0.03 0.84 8.04 -51.93 -0.42 0.42 16 39 H 0.05 1.08 4.50 -51.93 -0.23 0.84 16 40 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 42 H 0.07 1.41 7.22 -51.93 -0.37 1.03 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.87 7.00 -51.93 -0.36 0.51 16 48 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 50 H 0.12 1.92 7.95 -52.49 -0.42 1.51 16 51 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 403.00 15.07 6.07 6.07 Total: -1.00 -27.86 403.00 -9.93 -37.79 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -9.10 Total: 5.43 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.29 Total: -16.53 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.34 Total: -35.86 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.25 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -27.86 -9.93 -37.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727737875.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.655 kcal (2) G-P(sol) polarization free energy of solvation -27.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds