Wall clock time and date at job start Tue Mar 31 2020 11:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47401 * 2 1 4 4 C 1.38233 * 120.00147 * 269.73353 * 3 2 1 5 5 C 1.38240 * 119.99648 * 179.76529 * 4 3 2 6 6 C 1.38229 * 120.00265 * 0.50269 * 5 4 3 7 7 C 1.50693 * 120.00038 * 179.72538 * 6 5 4 8 8 H 1.09009 * 109.47253 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47384 * 60.02373 * 7 6 5 10 10 C 1.50698 * 109.47288 * 300.01934 * 7 6 5 11 11 O 1.21277 * 119.99895 * 13.61736 * 10 7 6 12 12 N 1.34776 * 119.99991 * 193.61054 * 10 7 6 13 13 C 1.46499 * 120.00071 * 3.82729 * 12 10 7 14 14 C 1.50700 * 109.47138 * 85.96672 * 13 12 10 15 15 H 1.08002 * 120.00006 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00147 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00006 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00003 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47392 * 90.00217 * 18 16 14 20 20 H 1.48502 * 109.46870 * 209.99994 * 18 16 14 21 21 H 1.48497 * 109.47165 * 329.99891 * 18 16 14 22 22 C 1.46505 * 119.99928 * 183.82481 * 12 10 7 23 23 C 1.53000 * 109.46879 * 95.48579 * 22 12 10 24 24 C 1.53001 * 109.47097 * 174.40359 * 23 22 12 25 25 C 1.52998 * 109.47165 * 294.40463 * 23 22 12 26 26 C 1.38236 * 119.99849 * 359.74799 * 6 5 4 27 27 C 1.38233 * 119.99721 * 89.99764 * 3 2 1 28 28 H 1.08998 * 109.47579 * 59.99864 * 1 2 3 29 29 H 1.09003 * 109.47342 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47042 * 299.99460 * 1 2 3 31 31 H 1.09003 * 109.47445 * 120.00600 * 2 1 3 32 32 H 1.09004 * 109.47042 * 240.00540 * 2 1 3 33 33 H 1.08001 * 120.00312 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.99741 * 180.22796 * 5 4 3 35 35 H 1.09003 * 109.46906 * 55.80595 * 9 7 6 36 36 H 1.08995 * 109.47250 * 175.80962 * 9 7 6 37 37 H 1.09001 * 109.46932 * 295.81345 * 9 7 6 38 38 H 1.09005 * 109.47211 * 205.96750 * 13 12 10 39 39 H 1.08999 * 109.46997 * 325.96628 * 13 12 10 40 40 H 0.97010 * 120.00158 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.46874 * 215.48355 * 22 12 10 42 42 H 1.08996 * 109.47138 * 335.48757 * 22 12 10 43 43 H 1.09005 * 109.47115 * 54.40650 * 23 22 12 44 44 H 1.08997 * 109.47189 * 60.00158 * 24 23 22 45 45 H 1.09002 * 109.47043 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.46977 * 299.99698 * 24 23 22 47 47 H 1.08996 * 109.47189 * 65.43007 * 25 23 22 48 48 H 1.09003 * 109.46801 * 185.42730 * 25 23 22 49 49 H 1.08995 * 109.47423 * 305.42568 * 25 23 22 50 50 H 1.08000 * 120.00395 * 179.97438 * 26 6 5 51 51 H 1.08001 * 120.00106 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1970 6 6 2.9547 4.0271 0.0001 7 6 3.4579 5.4475 0.0001 8 1 3.5794 5.7900 1.0279 9 6 2.4507 6.3455 -0.7210 10 6 4.7855 5.5102 -0.7103 11 8 5.1595 4.5711 -1.3804 12 7 5.5571 6.6098 -0.6010 13 6 5.1451 7.7096 0.2747 14 6 5.6200 7.4386 1.6790 15 1 6.1738 6.5374 1.8973 16 6 5.3476 8.3410 2.6852 17 7 4.6738 9.4386 2.4193 18 14 5.9370 8.0053 4.4257 19 1 7.2911 8.5862 4.6105 20 1 4.9967 8.6236 5.3946 21 1 5.9917 6.5393 4.6557 22 6 6.8078 6.7053 -1.3578 23 6 6.5587 7.4684 -2.6603 24 6 7.8884 7.6898 -3.3840 25 6 5.6199 6.6569 -3.5553 26 6 2.7240 3.3755 1.1972 27 6 2.2627 2.0724 1.1972 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 2.0925 1.5600 -2.1325 34 1 2.9049 3.8845 -2.1323 35 1 1.4719 6.2431 -0.2523 36 1 2.7777 7.3833 -0.6564 37 1 2.3848 6.0498 -1.7680 38 1 5.5819 8.6421 -0.0829 39 1 4.0582 7.7916 0.2683 40 1 4.4818 10.0734 3.1273 41 1 7.5526 7.2344 -0.7635 42 1 7.1709 5.7035 -1.5874 43 1 6.1027 8.4325 -2.4350 44 1 8.3444 6.7258 -3.6093 45 1 7.7110 8.2339 -4.3117 46 1 8.5572 8.2680 -2.7464 47 1 4.6413 6.5814 -3.0814 48 1 5.5189 7.1533 -4.5205 49 1 6.0308 5.6580 -3.7018 50 1 2.9044 3.8844 2.1326 51 1 2.0830 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727737875.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:00 Heat of formation + Delta-G solvation = -54.870579 kcal Electronic energy + Delta-G solvation = -27687.137625 eV Core-core repulsion = 24163.671633 eV Total energy + Delta-G solvation = -3523.465992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.42517 -40.00287 -37.49306 -36.16102 -35.52836 -34.21847 -33.25468 -31.76319 -29.53410 -29.26492 -28.01905 -27.30013 -25.72038 -24.83052 -23.63392 -23.46747 -21.68356 -20.95559 -19.78059 -18.61014 -17.98580 -17.41175 -16.75891 -16.48798 -16.24765 -16.12310 -15.70637 -15.45345 -14.90990 -14.78220 -14.64044 -14.46758 -14.40826 -14.07930 -13.95497 -13.74343 -13.53425 -13.30312 -13.14639 -13.07474 -12.86994 -12.76787 -12.73373 -12.51492 -12.44238 -12.28922 -12.21852 -12.02530 -11.94936 -11.82132 -11.63193 -11.59074 -11.52649 -11.51153 -10.65956 -10.42801 -9.71762 -9.37859 -9.33906 -8.20174 -6.34375 0.46252 0.58789 1.38758 1.41429 1.50349 1.84121 2.32206 2.45878 2.93698 3.09251 3.71228 3.76957 3.92426 3.97835 4.02691 4.07774 4.18367 4.20761 4.27952 4.36038 4.46642 4.56757 4.61815 4.66649 4.66696 4.70522 4.76168 4.79810 4.82306 4.89282 4.93614 4.97977 5.00806 5.05861 5.10087 5.10999 5.11501 5.20013 5.20397 5.28261 5.35677 5.41959 5.43562 5.46474 5.58158 5.68001 5.76914 5.82822 5.91921 6.08866 6.18707 6.59703 6.84534 7.33155 7.46548 8.84564 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.004622 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.573067 B = 6056.237749 C = 8175.449096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.088 4.088 4 C -0.129 4.129 5 C -0.087 4.087 6 C -0.082 4.082 7 C -0.069 4.069 8 H 0.092 0.908 9 C -0.128 4.128 10 C 0.525 3.475 11 O -0.580 6.580 12 N -0.596 5.596 13 C 0.247 3.753 14 C -0.548 4.548 15 H 0.046 0.954 16 C 0.027 3.973 17 N -0.915 5.915 18 Si 0.950 3.050 19 H -0.275 1.275 20 H -0.278 1.278 21 H -0.274 1.274 22 C 0.119 3.881 23 C -0.106 4.106 24 C -0.135 4.135 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.126 4.126 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.018 0.982 39 H 0.044 0.956 40 H 0.268 0.732 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.030 0.970 48 H 0.067 0.933 49 H 0.047 0.953 50 H 0.118 0.882 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 -11.151 -7.461 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.147 4.147 5 C -0.105 4.105 6 C -0.082 4.082 7 C -0.091 4.091 8 H 0.110 0.890 9 C -0.185 4.185 10 C 0.314 3.686 11 O -0.461 6.461 12 N -0.326 5.326 13 C 0.126 3.874 14 C -0.587 4.587 15 H 0.064 0.936 16 C -0.174 4.174 17 N -0.554 5.554 18 Si 0.775 3.225 19 H -0.201 1.201 20 H -0.203 1.203 21 H -0.198 1.198 22 C -0.004 4.004 23 C -0.126 4.126 24 C -0.193 4.193 25 C -0.184 4.184 26 C -0.145 4.145 27 C -0.144 4.144 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.049 0.951 48 H 0.086 0.914 49 H 0.066 0.934 50 H 0.136 0.864 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.247 -11.440 -7.721 14.765 hybrid contribution 0.584 0.574 1.293 1.530 sum -4.662 -10.866 -6.429 13.459 Atomic orbital electron populations 1.21722 0.93936 1.02444 1.01889 1.20566 0.96737 0.90935 1.03541 1.20176 0.98640 0.97378 0.92609 1.21197 1.00552 0.94344 0.98568 1.20918 0.97280 0.95288 0.97047 1.19496 0.99989 0.94529 0.94232 1.20187 0.92849 0.94345 1.01673 0.88992 1.21729 0.98196 0.98615 0.99974 1.20488 0.86388 0.81450 0.80323 1.90560 1.74564 1.37129 1.43871 1.48129 1.21918 1.18605 1.43938 1.19238 0.96467 0.84305 0.87373 1.21671 1.36274 1.06204 0.94523 0.93614 1.25553 0.94889 0.94594 1.02346 1.69993 1.39990 1.10859 1.34586 0.85678 0.78389 0.78329 0.80056 1.20100 1.20298 1.19843 1.21500 0.86016 1.00581 0.92281 1.21442 0.97873 0.98642 0.94637 1.21705 0.95204 1.02015 1.00347 1.21647 0.98274 0.99529 0.98942 1.21210 1.00150 0.95846 0.97246 1.21157 1.00473 0.94102 0.98663 0.92937 0.90843 0.92988 0.90287 0.90296 0.84563 0.87098 0.90498 0.91940 0.91991 0.96358 0.93865 0.92283 0.91610 0.91424 0.92107 0.92271 0.91041 0.92355 0.95084 0.91420 0.93387 0.86409 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 71.98 0.71 -1.51 16 2 C -0.08 -1.45 6.06 29.85 0.18 -1.27 16 3 C -0.09 -2.23 5.13 -19.87 -0.10 -2.33 16 4 C -0.13 -3.57 9.70 22.27 0.22 -3.35 16 5 C -0.09 -2.88 7.88 22.27 0.18 -2.71 16 6 C -0.08 -2.93 4.54 -19.87 -0.09 -3.02 16 7 C -0.07 -2.69 2.07 -12.29 -0.03 -2.71 16 8 H 0.09 3.99 6.69 -2.38 -0.02 3.97 16 9 C -0.13 -4.33 8.67 71.98 0.62 -3.71 16 10 C 0.52 22.22 5.50 87.66 0.48 22.70 16 11 O -0.58 -25.87 13.47 -3.02 -0.04 -25.91 16 12 N -0.60 -25.48 2.29 -826.16 -1.89 -27.37 16 13 C 0.25 11.80 4.80 85.63 0.41 12.22 16 14 C -0.55 -28.83 8.75 25.60 0.22 -28.61 16 15 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 16 C 0.03 1.42 5.46 84.65 0.46 1.88 16 17 N -0.92 -49.94 13.29 21.45 0.28 -49.65 16 18 Si 0.95 42.04 29.54 68.60 2.03 44.07 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.12 4.51 4.94 86.38 0.43 4.94 16 23 C -0.11 -3.34 3.12 -10.79 -0.03 -3.38 16 24 C -0.13 -3.32 9.19 71.98 0.66 -2.66 16 25 C -0.13 -3.89 8.14 71.98 0.59 -3.30 16 26 C -0.13 -4.18 9.67 22.27 0.22 -3.97 16 27 C -0.13 -3.47 9.70 22.27 0.22 -3.26 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 32 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.11 3.76 7.23 -2.91 -0.02 3.74 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 2.27 5.81 -2.39 -0.01 2.25 16 37 H 0.06 1.94 7.54 -2.39 -0.02 1.92 16 38 H 0.02 0.93 8.04 -2.38 -0.02 0.91 16 39 H 0.04 2.11 4.50 -2.39 -0.01 2.09 16 40 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 41 H 0.07 2.53 8.11 -2.39 -0.02 2.51 16 42 H 0.07 2.63 7.22 -2.39 -0.02 2.61 16 43 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 44 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 47 H 0.03 1.05 7.00 -2.39 -0.02 1.04 16 48 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 50 H 0.12 3.86 7.95 -2.91 -0.02 3.83 16 51 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -59.97 403.00 6.60 -53.37 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.87 Total: 29.55 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 5.34 Total: -24.06 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -1.60 Total: -77.02 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.04 Total: -25.91 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -59.97 6.60 -53.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727737875.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.499 kcal (2) G-P(sol) polarization free energy of solvation -59.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds