Wall clock time and date at job start Tue Mar 31 2020 11:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47437 * 2 1 4 4 C 1.38234 * 120.00037 * 269.73352 * 3 2 1 5 5 C 1.38239 * 119.99636 * 179.74430 * 4 3 2 6 6 C 1.38229 * 120.00141 * 0.54818 * 5 4 3 7 7 C 1.50696 * 120.00003 * 179.72789 * 6 5 4 8 8 H 1.09006 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47344 * 299.97326 * 7 6 5 10 10 C 1.50702 * 109.47518 * 59.97432 * 7 6 5 11 11 O 1.21278 * 119.99440 * 332.29718 * 10 7 6 12 12 N 1.34774 * 119.99975 * 152.29650 * 10 7 6 13 13 C 1.46498 * 120.00223 * 4.97518 * 12 10 7 14 14 C 1.50707 * 109.46761 * 93.12129 * 13 12 10 15 15 H 1.07994 * 119.99913 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99493 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00376 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99492 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47483 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47282 * 120.00135 * 18 16 14 21 21 H 1.48500 * 109.47219 * 239.99916 * 18 16 14 22 22 C 1.46504 * 119.99657 * 184.97690 * 12 10 7 23 23 C 1.53005 * 109.46988 * 95.51325 * 22 12 10 24 24 C 1.52999 * 109.47025 * 174.81136 * 23 22 12 25 25 C 1.52997 * 109.47146 * 294.81681 * 23 22 12 26 26 C 1.38237 * 119.99905 * 359.70200 * 6 5 4 27 27 C 1.38232 * 120.00275 * 0.02562 * 26 6 5 28 28 H 1.08997 * 109.47285 * 59.99976 * 1 2 3 29 29 H 1.09002 * 109.46841 * 299.99677 * 1 2 3 30 30 H 1.09003 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46962 * 120.00912 * 2 1 3 32 32 H 1.09004 * 109.46719 * 239.99549 * 2 1 3 33 33 H 1.08003 * 120.00228 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.99771 * 180.26991 * 5 4 3 35 35 H 1.09001 * 109.46596 * 65.60749 * 9 7 6 36 36 H 1.08994 * 109.47846 * 185.61041 * 9 7 6 37 37 H 1.09007 * 109.47198 * 305.61435 * 9 7 6 38 38 H 1.08997 * 109.47244 * 213.11686 * 13 12 10 39 39 H 1.08992 * 109.47041 * 333.11934 * 13 12 10 40 40 H 0.97004 * 119.99870 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47100 * 215.51108 * 22 12 10 42 42 H 1.08995 * 109.47383 * 335.51651 * 22 12 10 43 43 H 1.09005 * 109.46925 * 54.81379 * 23 22 12 44 44 H 1.09005 * 109.47071 * 60.00332 * 24 23 22 45 45 H 1.09000 * 109.46731 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.47279 * 300.00418 * 24 23 22 47 47 H 1.09002 * 109.46817 * 305.83881 * 25 23 22 48 48 H 1.08996 * 109.47599 * 65.83761 * 25 23 22 49 49 H 1.09003 * 109.47162 * 185.84004 * 25 23 22 50 50 H 1.07998 * 119.99819 * 180.02562 * 26 6 5 51 51 H 1.07999 * 120.00573 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2681 2.0705 -1.1971 5 6 2.7239 3.3756 -1.1971 6 6 2.9548 4.0270 0.0000 7 6 3.4576 5.4476 0.0001 8 1 3.5787 5.7902 1.0278 9 6 4.8055 5.5117 -0.7210 10 6 2.4654 6.3317 -0.7105 11 8 1.7508 5.8690 -1.5743 12 7 2.3721 7.6365 -0.3860 13 6 3.3078 8.2202 0.5783 14 6 4.4808 8.8156 -0.1571 15 1 4.5250 8.7639 -1.2349 16 6 5.4980 9.4253 0.5462 17 7 5.4444 9.4878 1.8588 18 14 6.9523 10.1626 -0.3654 19 1 6.7746 9.9615 -1.8259 20 1 7.0354 11.6158 -0.0717 21 1 8.2033 9.4959 0.0769 22 6 1.3350 8.4711 -0.9977 23 6 0.1220 8.5405 -0.0677 24 6 -0.9078 9.5139 -0.6446 25 6 -0.5045 7.1504 0.0579 26 6 2.7241 3.3754 1.1972 27 6 2.2629 2.0723 1.1972 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5140 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 2.0926 1.5598 -2.1325 34 1 2.9039 3.8847 -2.1324 35 1 4.6665 5.2649 -1.7735 36 1 5.2164 6.5175 -0.6348 37 1 5.4940 4.7980 -0.2683 38 1 2.8028 9.0000 1.1484 39 1 3.6607 7.4443 1.2576 40 1 6.1602 9.9164 2.3535 41 1 1.7260 9.4755 -1.1604 42 1 1.0365 8.0382 -1.9524 43 1 0.4380 8.8869 0.9163 44 1 -1.2238 9.1676 -1.6287 45 1 -1.7718 9.5637 0.0182 46 1 -0.4614 10.5043 -0.7341 47 1 -0.7257 6.7605 -0.9357 48 1 0.1923 6.4820 0.5636 49 1 -1.4267 7.2182 0.6352 50 1 2.9041 3.8845 2.1325 51 1 2.0830 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727737878.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:03 Heat of formation + Delta-G solvation = -45.150231 kcal Electronic energy + Delta-G solvation = -27728.398764 eV Core-core repulsion = 24205.354278 eV Total energy + Delta-G solvation = -3523.044486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.95359 -38.70362 -36.07924 -34.69480 -34.09165 -32.36608 -32.02180 -30.61073 -28.31374 -27.44368 -26.79276 -25.95169 -24.27632 -23.05175 -22.50514 -22.30693 -20.53161 -19.61195 -18.15457 -16.63478 -16.45821 -16.00098 -15.49496 -15.16925 -14.73855 -14.56065 -14.29759 -14.17620 -13.72049 -13.58762 -13.24090 -13.23116 -12.99822 -12.85043 -12.46717 -12.37072 -12.23023 -11.91239 -11.74546 -11.57058 -11.47463 -11.35633 -11.30851 -11.11248 -10.98086 -10.94857 -10.84326 -10.71069 -10.60122 -10.47518 -10.30917 -10.26359 -10.04329 -9.67665 -8.92519 -8.58063 -8.51117 -8.18378 -7.63911 -6.20109 -4.26442 1.61711 1.75190 3.19844 3.29124 3.32400 3.46435 3.87927 4.17027 4.32855 4.82843 4.92041 5.11737 5.16758 5.23087 5.27477 5.29987 5.32304 5.33862 5.41721 5.54525 5.55759 5.67643 5.74921 5.81634 5.84304 5.90401 5.93307 6.01358 6.04815 6.06080 6.12342 6.17591 6.28300 6.32064 6.35101 6.39099 6.42986 6.43698 6.48274 6.66266 6.71360 6.76244 6.84030 6.86311 6.95279 7.05949 7.20681 7.33606 7.57417 7.75417 8.04894 8.39204 8.79218 9.07396 9.40690 10.86294 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011924 B = 0.004191 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.740088 B = 6679.524862 C = 8252.700677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.092 4.092 4 C -0.126 4.126 5 C -0.074 4.074 6 C -0.066 4.066 7 C -0.068 4.068 8 H 0.101 0.899 9 C -0.140 4.140 10 C 0.526 3.474 11 O -0.567 6.567 12 N -0.593 5.593 13 C 0.235 3.765 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.124 3.876 23 C -0.112 4.112 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.112 4.112 27 C -0.126 4.126 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.033 0.967 39 H 0.041 0.959 40 H 0.264 0.736 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.049 0.951 49 H 0.042 0.958 50 H 0.119 0.881 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 -11.403 -1.543 13.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.144 4.144 5 C -0.092 4.092 6 C -0.066 4.066 7 C -0.089 4.089 8 H 0.119 0.881 9 C -0.198 4.198 10 C 0.314 3.686 11 O -0.447 6.447 12 N -0.322 5.322 13 C 0.115 3.885 14 C -0.571 4.571 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.000 4.000 23 C -0.132 4.132 24 C -0.199 4.199 25 C -0.192 4.192 26 C -0.130 4.130 27 C -0.144 4.144 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.137 0.863 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.889 -11.542 -1.819 14.099 hybrid contribution 0.944 0.675 -0.197 1.177 sum -6.945 -10.867 -2.016 13.054 Atomic orbital electron populations 1.21746 0.95026 1.01227 1.02348 1.20490 0.95985 0.93086 1.02317 1.19791 1.00080 0.96000 0.93378 1.20956 1.01255 0.95120 0.97079 1.21043 0.96563 0.93382 0.98251 1.19615 0.98944 0.94805 0.93256 1.20229 0.95786 0.90663 1.02265 0.88112 1.21809 0.93935 1.04976 0.99056 1.20185 0.83067 0.82595 0.82742 1.90571 1.46205 1.74599 1.33357 1.48141 1.31798 1.08192 1.44067 1.19467 0.87178 0.94355 0.87481 1.21496 1.04554 1.37239 0.93838 0.91978 1.24926 0.98263 0.95742 0.94801 1.69928 1.33484 1.43644 1.05733 0.86523 0.82362 0.78988 0.80143 1.19622 1.20894 1.20795 1.21346 0.87158 0.95489 0.95990 1.21498 0.95636 0.95799 1.00252 1.21745 0.98442 0.99032 1.00658 1.21719 0.99344 0.96464 1.01630 1.21044 0.99637 0.94844 0.97514 1.20847 1.01414 0.94966 0.97136 0.92536 0.92608 0.92769 0.91426 0.91406 0.86738 0.85674 0.93113 0.88607 0.92568 0.94880 0.94164 0.92587 0.90800 0.90802 0.91098 0.92892 0.93019 0.92658 0.92550 0.93145 0.93903 0.86252 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.90 37.16 0.37 -1.02 16 2 C -0.08 -0.83 6.06 -27.88 -0.17 -1.00 16 3 C -0.09 -1.22 5.13 -104.63 -0.54 -1.76 16 4 C -0.13 -1.81 9.70 -39.58 -0.38 -2.20 16 5 C -0.07 -1.23 7.97 -39.58 -0.32 -1.55 16 6 C -0.07 -1.12 4.67 -104.63 -0.49 -1.61 16 7 C -0.07 -1.27 2.19 -92.92 -0.20 -1.47 16 8 H 0.10 1.91 5.79 -51.93 -0.30 1.61 16 9 C -0.14 -2.54 8.89 37.16 0.33 -2.21 16 10 C 0.53 10.70 5.41 -10.99 -0.06 10.64 16 11 O -0.57 -12.22 13.41 5.56 0.07 -12.14 16 12 N -0.59 -12.18 2.27 -175.06 -0.40 -12.58 16 13 C 0.24 5.39 5.01 -5.19 -0.03 5.36 16 14 C -0.53 -13.29 7.54 -34.44 -0.26 -13.55 16 15 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 16 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -23.83 13.29 55.43 0.74 -23.09 16 18 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 C 0.12 2.29 4.99 -4.04 -0.02 2.27 16 23 C -0.11 -1.81 3.12 -90.62 -0.28 -2.09 16 24 C -0.14 -1.87 9.19 37.16 0.34 -1.53 16 25 C -0.13 -2.18 8.16 37.16 0.30 -1.88 16 26 C -0.11 -1.72 9.67 -39.58 -0.38 -2.10 16 27 C -0.13 -1.71 9.70 -39.58 -0.38 -2.09 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.13 2.18 6.90 -52.48 -0.36 1.82 16 35 H 0.05 0.89 7.59 -51.93 -0.39 0.49 16 36 H 0.10 1.96 6.07 -51.93 -0.32 1.65 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.81 8.02 -51.93 -0.42 0.39 16 39 H 0.04 0.95 5.65 -51.93 -0.29 0.66 16 40 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 41 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 42 H 0.07 1.40 7.21 -51.93 -0.37 1.02 16 43 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 48 H 0.05 0.91 7.03 -51.93 -0.37 0.55 16 49 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.12 1.68 7.95 -52.49 -0.42 1.26 16 51 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 402.62 15.07 6.07 6.07 Total: -1.00 -27.28 402.62 -9.92 -37.19 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -9.11 Total: 5.68 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -2.27 Total: -16.20 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.34 Total: -35.67 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -27.28 -9.92 -37.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727737878.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.955 kcal (2) G-P(sol) polarization free energy of solvation -27.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds