Wall clock time and date at job start Tue Mar 31 2020 11:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47437 * 2 1 4 4 C 1.38234 * 120.00037 * 269.73352 * 3 2 1 5 5 C 1.38239 * 119.99636 * 179.74430 * 4 3 2 6 6 C 1.38229 * 120.00141 * 0.54818 * 5 4 3 7 7 C 1.50696 * 120.00003 * 179.72789 * 6 5 4 8 8 H 1.09006 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47344 * 299.97326 * 7 6 5 10 10 C 1.50702 * 109.47518 * 59.97432 * 7 6 5 11 11 O 1.21278 * 119.99440 * 332.29718 * 10 7 6 12 12 N 1.34774 * 119.99975 * 152.29650 * 10 7 6 13 13 C 1.46498 * 120.00223 * 4.97518 * 12 10 7 14 14 C 1.50707 * 109.46761 * 93.12129 * 13 12 10 15 15 H 1.07994 * 119.99913 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99493 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00376 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99492 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47483 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47282 * 120.00135 * 18 16 14 21 21 H 1.48500 * 109.47219 * 239.99916 * 18 16 14 22 22 C 1.46504 * 119.99657 * 184.97690 * 12 10 7 23 23 C 1.53005 * 109.46988 * 95.51325 * 22 12 10 24 24 C 1.52999 * 109.47025 * 174.81136 * 23 22 12 25 25 C 1.52997 * 109.47146 * 294.81681 * 23 22 12 26 26 C 1.38237 * 119.99905 * 359.70200 * 6 5 4 27 27 C 1.38232 * 120.00275 * 0.02562 * 26 6 5 28 28 H 1.08997 * 109.47285 * 59.99976 * 1 2 3 29 29 H 1.09002 * 109.46841 * 299.99677 * 1 2 3 30 30 H 1.09003 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46962 * 120.00912 * 2 1 3 32 32 H 1.09004 * 109.46719 * 239.99549 * 2 1 3 33 33 H 1.08003 * 120.00228 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.99771 * 180.26991 * 5 4 3 35 35 H 1.09001 * 109.46596 * 65.60749 * 9 7 6 36 36 H 1.08994 * 109.47846 * 185.61041 * 9 7 6 37 37 H 1.09007 * 109.47198 * 305.61435 * 9 7 6 38 38 H 1.08997 * 109.47244 * 213.11686 * 13 12 10 39 39 H 1.08992 * 109.47041 * 333.11934 * 13 12 10 40 40 H 0.97004 * 119.99870 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47100 * 215.51108 * 22 12 10 42 42 H 1.08995 * 109.47383 * 335.51651 * 22 12 10 43 43 H 1.09005 * 109.46925 * 54.81379 * 23 22 12 44 44 H 1.09005 * 109.47071 * 60.00332 * 24 23 22 45 45 H 1.09000 * 109.46731 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.47279 * 300.00418 * 24 23 22 47 47 H 1.09002 * 109.46817 * 305.83881 * 25 23 22 48 48 H 1.08996 * 109.47599 * 65.83761 * 25 23 22 49 49 H 1.09003 * 109.47162 * 185.84004 * 25 23 22 50 50 H 1.07998 * 119.99819 * 180.02562 * 26 6 5 51 51 H 1.07999 * 120.00573 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2681 2.0705 -1.1971 5 6 2.7239 3.3756 -1.1971 6 6 2.9548 4.0270 0.0000 7 6 3.4576 5.4476 0.0001 8 1 3.5787 5.7902 1.0278 9 6 4.8055 5.5117 -0.7210 10 6 2.4654 6.3317 -0.7105 11 8 1.7508 5.8690 -1.5743 12 7 2.3721 7.6365 -0.3860 13 6 3.3078 8.2202 0.5783 14 6 4.4808 8.8156 -0.1571 15 1 4.5250 8.7639 -1.2349 16 6 5.4980 9.4253 0.5462 17 7 5.4444 9.4878 1.8588 18 14 6.9523 10.1626 -0.3654 19 1 6.7746 9.9615 -1.8259 20 1 7.0354 11.6158 -0.0717 21 1 8.2033 9.4959 0.0769 22 6 1.3350 8.4711 -0.9977 23 6 0.1220 8.5405 -0.0677 24 6 -0.9078 9.5139 -0.6446 25 6 -0.5045 7.1504 0.0579 26 6 2.7241 3.3754 1.1972 27 6 2.2629 2.0723 1.1972 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5140 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 2.0926 1.5598 -2.1325 34 1 2.9039 3.8847 -2.1324 35 1 4.6665 5.2649 -1.7735 36 1 5.2164 6.5175 -0.6348 37 1 5.4940 4.7980 -0.2683 38 1 2.8028 9.0000 1.1484 39 1 3.6607 7.4443 1.2576 40 1 6.1602 9.9164 2.3535 41 1 1.7260 9.4755 -1.1604 42 1 1.0365 8.0382 -1.9524 43 1 0.4380 8.8869 0.9163 44 1 -1.2238 9.1676 -1.6287 45 1 -1.7718 9.5637 0.0182 46 1 -0.4614 10.5043 -0.7341 47 1 -0.7257 6.7605 -0.9357 48 1 0.1923 6.4820 0.5636 49 1 -1.4267 7.2182 0.6352 50 1 2.9041 3.8845 2.1325 51 1 2.0830 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727737878.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:03 Heat of formation + Delta-G solvation = -55.063261 kcal Electronic energy + Delta-G solvation = -27728.828625 eV Core-core repulsion = 24205.354278 eV Total energy + Delta-G solvation = -3523.474348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42125 -40.00557 -37.53056 -36.13546 -35.52650 -34.18834 -33.24068 -31.76479 -29.51120 -29.22676 -28.08103 -27.45397 -25.47975 -24.90202 -23.66997 -23.51694 -21.67338 -20.94591 -19.77089 -18.47299 -18.12741 -17.46914 -16.75691 -16.48519 -16.23060 -16.05652 -15.77332 -15.50002 -14.83570 -14.71984 -14.54673 -14.48359 -14.34729 -14.13206 -13.97211 -13.77904 -13.59284 -13.24128 -13.21282 -13.02381 -12.86273 -12.72389 -12.65557 -12.59935 -12.46276 -12.26816 -12.20912 -12.08800 -11.92065 -11.85356 -11.63019 -11.60295 -11.56776 -11.48545 -10.65253 -10.40881 -9.72295 -9.40959 -9.32194 -8.18381 -6.30972 0.44837 0.58599 1.39646 1.43821 1.53281 1.82532 2.31787 2.46332 2.92996 3.11567 3.74425 3.76483 3.92470 3.97906 4.01305 4.06308 4.16715 4.19925 4.23013 4.39111 4.44208 4.55712 4.62985 4.65388 4.66275 4.72171 4.76482 4.77341 4.88076 4.89906 4.91911 4.99036 5.00751 5.05948 5.10053 5.10763 5.18197 5.18660 5.24607 5.27435 5.37665 5.38921 5.42394 5.44239 5.58832 5.69051 5.77074 5.82020 5.90856 6.08401 6.18293 6.61879 6.85028 7.34204 7.46051 8.87132 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011924 B = 0.004191 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.740088 B = 6679.524862 C = 8252.700677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.088 4.088 4 C -0.131 4.131 5 C -0.090 4.090 6 C -0.087 4.087 7 C -0.063 4.063 8 H 0.091 0.909 9 C -0.132 4.132 10 C 0.524 3.476 11 O -0.580 6.580 12 N -0.597 5.597 13 C 0.253 3.747 14 C -0.535 4.535 15 H 0.051 0.949 16 C 0.025 3.975 17 N -0.918 5.918 18 Si 0.950 3.050 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.277 1.277 22 C 0.121 3.879 23 C -0.107 4.107 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.124 4.124 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.016 0.984 39 H 0.032 0.968 40 H 0.267 0.733 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.046 0.954 48 H 0.025 0.975 49 H 0.066 0.934 50 H 0.125 0.875 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.364 -12.901 -1.479 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.148 4.148 5 C -0.109 4.109 6 C -0.087 4.087 7 C -0.084 4.084 8 H 0.109 0.891 9 C -0.189 4.189 10 C 0.313 3.687 11 O -0.461 6.461 12 N -0.326 5.326 13 C 0.132 3.868 14 C -0.573 4.573 15 H 0.069 0.931 16 C -0.175 4.175 17 N -0.557 5.557 18 Si 0.776 3.224 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.203 1.203 22 C -0.002 4.002 23 C -0.127 4.127 24 C -0.192 4.192 25 C -0.182 4.182 26 C -0.140 4.140 27 C -0.142 4.142 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.151 0.849 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.034 0.966 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.044 0.956 49 H 0.085 0.915 50 H 0.143 0.857 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.638 -13.039 -1.766 15.740 hybrid contribution 1.123 1.070 -0.227 1.568 sum -7.515 -11.969 -1.993 14.272 Atomic orbital electron populations 1.21737 0.94452 1.02413 1.01620 1.20566 0.96316 0.90981 1.03810 1.20197 0.98442 0.97488 0.92636 1.21197 1.00688 0.94327 0.98636 1.20987 0.97971 0.94546 0.97351 1.19535 1.00869 0.93982 0.94316 1.20151 0.95417 0.91688 1.01187 0.89115 1.21698 0.94133 1.03737 0.99340 1.20519 0.83145 0.82535 0.82550 1.90549 1.46825 1.74757 1.34002 1.48151 1.32001 1.08650 1.43800 1.19095 0.86863 0.93418 0.87443 1.21593 1.05272 1.37155 0.93314 0.93056 1.25560 1.00433 0.96111 0.95408 1.70009 1.34370 1.44479 1.06843 0.85626 0.79628 0.78245 0.78930 1.19628 1.20552 1.20295 1.21476 0.87658 0.94714 0.96362 1.21446 0.95376 0.96669 0.99177 1.21698 0.98044 0.98226 1.01220 1.21623 0.99714 0.95761 1.01111 1.21212 0.99899 0.95833 0.97103 1.21182 1.00215 0.94224 0.98604 0.93533 0.93102 0.90671 0.89747 0.90181 0.84899 0.87398 0.93026 0.91185 0.90852 0.96573 0.95038 0.92386 0.91335 0.91300 0.92212 0.92210 0.91118 0.92195 0.93437 0.95624 0.91479 0.85661 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.90 71.98 0.71 -1.63 16 2 C -0.08 -1.36 6.06 29.85 0.18 -1.17 16 3 C -0.09 -2.12 5.13 -19.87 -0.10 -2.23 16 4 C -0.13 -3.61 9.70 22.27 0.22 -3.39 16 5 C -0.09 -3.03 7.97 22.27 0.18 -2.85 16 6 C -0.09 -2.99 4.67 -19.87 -0.09 -3.09 16 7 C -0.06 -2.43 2.19 -12.29 -0.03 -2.46 16 8 H 0.09 3.61 5.79 -2.38 -0.01 3.60 16 9 C -0.13 -4.92 8.89 71.98 0.64 -4.29 16 10 C 0.52 22.09 5.41 87.66 0.47 22.56 16 11 O -0.58 -25.78 13.41 -3.02 -0.04 -25.82 16 12 N -0.60 -25.47 2.27 -826.15 -1.87 -27.34 16 13 C 0.25 12.04 5.01 85.64 0.43 12.47 16 14 C -0.53 -27.38 7.54 25.60 0.19 -27.18 16 15 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 16 C 0.03 1.31 5.46 84.66 0.46 1.78 16 17 N -0.92 -49.81 13.29 21.45 0.28 -49.52 16 18 Si 0.95 41.49 29.54 68.60 2.03 43.52 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 C 0.12 4.58 4.99 86.38 0.43 5.01 16 23 C -0.11 -3.45 3.12 -10.79 -0.03 -3.48 16 24 C -0.13 -3.36 9.19 71.98 0.66 -2.70 16 25 C -0.12 -4.03 8.16 71.98 0.59 -3.44 16 26 C -0.12 -3.70 9.67 22.27 0.22 -3.48 16 27 C -0.12 -3.14 9.70 22.27 0.22 -2.93 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 32 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.11 3.90 6.90 -2.91 -0.02 3.88 16 35 H 0.05 1.87 7.59 -2.39 -0.02 1.86 16 36 H 0.07 2.97 6.07 -2.39 -0.01 2.96 16 37 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.02 0.82 8.02 -2.39 -0.02 0.80 16 39 H 0.03 1.57 5.65 -2.39 -0.01 1.55 16 40 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 41 H 0.07 2.63 8.11 -2.39 -0.02 2.61 16 42 H 0.07 2.67 7.21 -2.39 -0.02 2.65 16 43 H 0.06 2.06 8.06 -2.38 -0.02 2.04 16 44 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 48 H 0.02 0.93 7.03 -2.39 -0.02 0.91 16 49 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.13 3.52 7.95 -2.91 -0.02 3.50 16 51 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -58.96 402.62 6.61 -52.35 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.87 Total: 29.32 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 5.34 Total: -22.50 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -1.59 Total: -76.87 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.04 Total: -25.82 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -58.96 6.61 -52.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727737878.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.716 kcal (2) G-P(sol) polarization free energy of solvation -58.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds