Wall clock time and date at job start Tue Mar 31 2020 11:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46751 * 2 1 4 4 C 1.52999 * 109.46822 * 175.00028 * 3 2 1 5 5 C 1.52998 * 109.47292 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47243 * 300.00412 * 5 4 3 7 7 N 1.46900 * 109.47430 * 179.97438 * 6 5 4 8 8 C 1.46907 * 110.99773 * 56.04492 * 7 6 5 9 9 C 1.46897 * 111.00015 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47168 * 170.00172 * 9 7 6 11 11 C 1.38299 * 119.93217 * 269.73195 * 10 9 7 12 12 C 1.38093 * 120.06953 * 179.72477 * 11 10 9 13 13 C 1.38883 * 119.92808 * 0.56550 * 12 11 10 14 14 O 1.35754 * 120.06438 * 179.68623 * 13 12 11 15 15 C 1.34826 * 116.99724 * 174.49160 * 14 13 12 16 16 H 1.07998 * 120.00100 * 5.04739 * 15 14 13 17 17 C 1.38654 * 119.99970 * 185.05457 * 15 14 13 18 18 N 1.31557 * 120.00012 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99959 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47303 * 60.00249 * 19 17 15 21 21 H 1.48499 * 109.46956 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47359 * 299.99968 * 19 17 15 23 23 C 1.38871 * 119.86468 * 359.70509 * 13 12 11 24 24 C 1.38101 * 119.93230 * 0.02562 * 23 13 12 25 25 C 1.52999 * 109.47001 * 59.99382 * 6 5 4 26 26 C 1.52996 * 109.47433 * 295.00365 * 3 2 1 27 27 H 1.08998 * 109.46775 * 299.99546 * 1 2 3 28 28 H 1.09000 * 109.46875 * 59.99647 * 1 2 3 29 29 H 1.08996 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46775 * 240.00453 * 2 1 3 31 31 H 1.08992 * 109.47008 * 120.00061 * 2 1 3 32 32 H 1.08998 * 109.47201 * 55.00678 * 3 2 1 33 33 H 1.09000 * 109.47216 * 60.00378 * 4 3 2 34 34 H 1.09006 * 109.47352 * 300.00109 * 4 3 2 35 35 H 1.08996 * 109.47814 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47296 * 59.99645 * 5 4 3 37 37 H 1.09001 * 109.46348 * 299.99814 * 6 5 4 38 38 H 1.08997 * 109.47084 * 183.95093 * 8 7 6 39 39 H 1.09001 * 109.47058 * 303.95359 * 8 7 6 40 40 H 1.09002 * 109.47350 * 63.95211 * 8 7 6 41 41 H 1.09002 * 109.46852 * 49.99998 * 9 7 6 42 42 H 1.09001 * 109.47162 * 290.00440 * 9 7 6 43 43 H 1.08005 * 119.96050 * 359.97425 * 11 10 9 44 44 H 1.07999 * 120.03730 * 180.26989 * 12 11 10 45 45 H 0.97002 * 120.00021 * 179.97438 * 18 17 15 46 46 H 1.08002 * 120.03853 * 179.97438 * 23 13 12 47 47 H 1.07997 * 119.96732 * 179.97438 * 24 23 13 48 48 H 1.09001 * 109.47216 * 60.00964 * 25 6 5 49 49 H 1.09003 * 109.46554 * 180.02562 * 25 6 5 50 50 H 1.09000 * 109.46953 * 299.99835 * 26 3 2 51 51 H 1.08998 * 109.47324 * 60.00267 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0748 2.8869 0.1264 6 6 3.6699 3.5716 -1.1806 7 7 4.1590 4.9568 -1.1798 8 6 5.6117 5.0020 -0.9661 9 6 3.7884 5.6467 -2.4226 10 6 4.0853 7.1180 -2.2882 11 6 3.1161 7.9759 -1.8011 12 6 3.3870 9.3238 -1.6714 13 6 4.6304 9.8194 -2.0417 14 8 4.8975 11.1449 -1.9213 15 6 6.1577 11.5422 -2.1897 16 1 6.8799 10.8314 -2.5633 17 6 6.5264 12.8631 -1.9859 18 7 5.6466 13.7290 -1.5311 19 14 8.2726 13.4134 -2.3571 20 1 8.5725 13.1745 -3.7917 21 1 8.4094 14.8614 -2.0577 22 1 9.2238 12.6418 -1.5174 23 6 5.5997 8.9563 -2.5357 24 6 5.3246 7.6085 -2.6578 25 6 2.1451 3.5697 -1.3063 26 6 1.6351 2.1266 -1.3072 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6054 1.9815 0.8419 33 1 3.9994 0.9054 -0.7161 34 1 3.8532 0.9570 1.0571 35 1 5.1610 2.8883 0.2164 36 1 3.6401 3.4256 0.9684 37 1 4.1046 3.0329 -2.0227 38 1 5.9371 6.0401 -0.8999 39 1 5.8590 4.4839 -0.0395 40 1 6.1170 4.5154 -1.8004 41 1 2.7242 5.5066 -2.6125 42 1 4.3628 5.2344 -3.2522 43 1 2.1476 7.5906 -1.5181 44 1 2.6312 9.9925 -1.2869 45 1 5.9046 14.6531 -1.3881 46 1 6.5674 9.3387 -2.8249 47 1 6.0778 6.9368 -3.0423 48 1 1.7104 4.1083 -0.4643 49 1 1.8568 4.0571 -2.2377 50 1 2.0698 1.5877 -2.1491 51 1 0.5488 2.1254 -1.3968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731211976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:25 Heat of formation + Delta-G solvation = -24.225888 kcal Electronic energy + Delta-G solvation = -26408.058867 eV Core-core repulsion = 22885.921728 eV Total energy + Delta-G solvation = -3522.137139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.79538 -38.93321 -37.26772 -35.90070 -33.14173 -32.23499 -31.22195 -30.15791 -29.96676 -28.24436 -26.59623 -25.39680 -24.12185 -22.73301 -22.23453 -21.88639 -20.50055 -20.07361 -19.81627 -17.94005 -16.93198 -16.25433 -15.55169 -15.03674 -14.80582 -14.74564 -14.53919 -14.25962 -14.10462 -13.92931 -13.56190 -13.54788 -13.44128 -13.10535 -12.92377 -12.67787 -12.60766 -12.25565 -12.03860 -11.81382 -11.72633 -11.45827 -11.37811 -11.32739 -11.18387 -11.15490 -10.97547 -10.77153 -10.67529 -10.61487 -10.47590 -10.39693 -10.25679 -9.93360 -9.29937 -8.80326 -8.18817 -8.08951 -7.12647 -6.42406 -4.01234 2.26705 2.33247 3.14127 3.15136 3.18030 3.97517 3.99995 4.41344 4.46714 4.60613 4.69193 4.84063 4.90245 5.11768 5.13129 5.15873 5.22436 5.24227 5.29054 5.32909 5.36185 5.37329 5.45163 5.46969 5.59649 5.61797 5.65017 5.67368 5.72292 5.76503 5.81261 5.85385 5.88198 5.93626 6.01180 6.02652 6.08782 6.13786 6.16320 6.21550 6.26086 6.34969 6.47121 6.75461 6.94791 7.06395 7.20154 7.24959 7.33751 7.45450 7.48875 7.87749 8.02646 9.03176 9.74245 10.75643 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.033406 B = 0.002165 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.971490 B =12929.849697 C =13343.971712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.112 4.112 5 C -0.114 4.114 6 C 0.086 3.914 7 N -0.531 5.531 8 C 0.020 3.980 9 C 0.109 3.891 10 C -0.176 4.176 11 C -0.053 4.053 12 C -0.194 4.194 13 C 0.155 3.845 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.235 4.235 24 C -0.066 4.066 25 C -0.115 4.115 26 C -0.112 4.112 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.018 0.982 41 H 0.077 0.923 42 H 0.029 0.971 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.270 0.730 46 H 0.125 0.875 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 -25.080 1.424 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.107 4.107 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.022 4.022 7 N -0.255 5.255 8 C -0.128 4.128 9 C -0.017 4.017 10 C -0.177 4.177 11 C -0.072 4.072 12 C -0.213 4.213 13 C 0.101 3.899 14 O -0.082 6.082 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.254 4.254 24 C -0.085 4.085 25 C -0.152 4.152 26 C -0.150 4.150 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.119 0.881 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.864 -24.374 1.931 25.144 hybrid contribution 1.431 -0.114 -0.886 1.687 sum -4.432 -24.488 1.045 24.907 Atomic orbital electron populations 1.21825 0.95983 1.01334 1.02018 1.21573 0.95861 0.96572 1.01722 1.21212 0.95496 0.95562 0.98399 1.21572 0.95217 0.96633 1.01557 1.21651 1.00641 0.95013 0.97888 1.21608 0.95283 0.88576 0.96732 1.62087 1.13398 1.13772 1.36278 1.22478 0.87458 1.03027 0.99802 1.20882 1.00325 0.91308 0.89228 1.19072 0.95401 0.93675 1.09564 1.20437 0.97857 0.92042 0.96853 1.20212 0.96426 0.95308 1.09393 1.19392 0.93264 0.84916 0.92301 1.83980 1.31138 1.17088 1.76023 1.21259 0.85414 0.95025 1.45073 0.89205 1.25278 0.99838 0.94881 0.96540 1.70030 1.34231 1.03871 1.41705 0.85796 0.80549 0.78068 0.79092 1.19561 1.20291 1.19535 1.21109 1.01133 0.93581 1.09561 1.20590 0.95333 0.94503 0.98048 1.21659 0.94630 0.96348 1.02598 1.21625 1.00611 0.95588 0.97217 0.92771 0.92431 0.93085 0.92206 0.92208 0.91059 0.92290 0.92009 0.91861 0.91030 0.94842 0.90380 0.91614 0.96378 0.90513 0.95312 0.87171 0.86636 0.92014 0.85737 0.88053 0.90966 0.91750 0.92322 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.67 37.16 0.36 -0.60 16 2 C -0.12 -0.78 5.40 -26.73 -0.14 -0.93 16 3 C -0.09 -0.66 2.19 -90.62 -0.20 -0.86 16 4 C -0.11 -0.88 5.20 -26.73 -0.14 -1.01 16 5 C -0.11 -1.09 4.85 -26.73 -0.13 -1.22 16 6 C 0.09 0.92 1.95 -67.71 -0.13 0.79 16 7 N -0.53 -6.97 4.62 -236.32 -1.09 -8.06 16 8 C 0.02 0.26 8.76 60.07 0.53 0.79 16 9 C 0.11 1.52 4.93 -4.98 -0.02 1.50 16 10 C -0.18 -3.03 4.89 -104.57 -0.51 -3.54 16 11 C -0.05 -0.97 9.69 -39.61 -0.38 -1.35 16 12 C -0.19 -4.18 9.99 -39.40 -0.39 -4.57 16 13 C 0.15 3.80 6.65 -39.11 -0.26 3.54 16 14 O -0.18 -5.17 9.76 0.05 0.00 -5.17 16 15 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 16 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.52 13.67 55.48 0.76 -24.77 16 19 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 C -0.23 -5.14 9.17 -39.40 -0.36 -5.50 16 24 C -0.07 -1.22 7.96 -39.61 -0.32 -1.53 16 25 C -0.11 -1.11 5.00 -26.71 -0.13 -1.25 16 26 C -0.11 -0.89 4.96 -26.71 -0.13 -1.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.60 6.26 -51.93 -0.33 0.28 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 1.17 6.16 -51.93 -0.32 0.85 16 39 H 0.07 0.76 6.01 -51.93 -0.31 0.45 16 40 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.08 0.99 5.77 -51.93 -0.30 0.69 16 42 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 43 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 44 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.12 2.74 5.64 -52.49 -0.30 2.44 16 47 H 0.10 1.63 8.03 -52.49 -0.42 1.21 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.06 0.64 6.20 -51.93 -0.32 0.32 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 51 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 LS Contribution 387.76 15.07 5.84 5.84 Total: -1.00 -29.80 387.76 -10.41 -40.22 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.72 Total: 2.82 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -2.18 Total: -26.55 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: -0.33 Total: -32.82 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.17 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.80 -10.41 -40.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731211976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.990 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds