Wall clock time and date at job start Tue Mar 31 2020 12:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 C 1.52999 * 109.47277 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47277 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47409 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47409 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46523 * 305.00293 * 7 6 5 9 9 C 1.53004 * 109.47055 * 64.99947 * 7 6 5 10 10 C 1.53002 * 109.46773 * 53.57200 * 9 7 6 11 11 C 1.50697 * 109.46976 * 185.00114 * 7 6 5 12 12 O 1.21272 * 120.00118 * 308.70393 * 11 7 6 13 13 N 1.34778 * 119.99879 * 128.70245 * 11 7 6 14 14 C 1.39233 * 120.00222 * 172.12662 * 13 11 7 15 15 C 1.39481 * 119.83331 * 25.88406 * 14 13 11 16 16 C 1.36377 * 120.17019 * 179.71719 * 15 14 13 17 17 C 1.40866 * 119.82526 * 0.57330 * 16 15 14 18 18 C 1.41153 * 120.16244 * 179.67924 * 17 16 15 19 19 H 1.08001 * 119.99687 * 194.24721 * 18 17 16 20 20 C 1.39907 * 119.99780 * 14.24658 * 18 17 16 21 21 N 1.30867 * 120.00384 * 21.91572 * 20 18 17 22 22 Si 1.86799 * 119.99715 * 201.91677 * 20 18 17 23 23 H 1.48499 * 109.47395 * 59.99934 * 22 20 18 24 24 H 1.48497 * 109.47216 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47352 * 300.00058 * 22 20 18 26 26 C 1.40870 * 119.67382 * 359.69795 * 17 16 15 27 27 C 1.36378 * 119.82669 * 0.02562 * 26 17 16 28 28 H 1.08999 * 109.46958 * 59.99861 * 1 2 3 29 29 H 1.08997 * 109.47493 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47225 * 300.00497 * 1 2 3 31 31 H 1.08989 * 109.47131 * 239.99952 * 2 1 3 32 32 H 1.09005 * 109.46996 * 119.99719 * 2 1 3 33 33 H 1.09003 * 109.46937 * 59.99864 * 3 2 1 34 34 H 1.08999 * 109.47240 * 299.99966 * 3 2 1 35 35 H 1.08990 * 109.47108 * 59.99401 * 4 3 2 36 36 H 1.09005 * 109.46996 * 299.99719 * 4 3 2 37 37 H 1.09003 * 109.46937 * 59.99864 * 5 4 3 38 38 H 1.08999 * 109.47240 * 299.99966 * 5 4 3 39 39 H 1.08998 * 109.46445 * 59.99614 * 6 5 4 40 40 H 1.08999 * 109.47181 * 300.00356 * 6 5 4 41 41 H 1.08995 * 109.46989 * 293.57043 * 9 7 6 42 42 H 1.08995 * 109.46783 * 173.56818 * 9 7 6 43 43 H 1.08996 * 109.47228 * 55.42730 * 10 9 7 44 44 H 1.08996 * 109.47316 * 295.42808 * 10 9 7 45 45 H 1.09002 * 109.46742 * 175.42664 * 10 9 7 46 46 H 0.97007 * 119.99854 * 352.13218 * 13 11 7 47 47 H 1.08004 * 119.91344 * 359.97438 * 15 14 13 48 48 H 1.07995 * 120.08242 * 180.25022 * 16 15 14 49 49 H 0.96998 * 120.00274 * 179.97438 * 21 20 18 50 50 H 1.07998 * 120.08362 * 179.97438 * 26 17 16 51 51 H 1.08000 * 119.90846 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6101 2.8850 0.0013 7 6 6.1201 4.3274 0.0013 8 1 5.6861 4.8662 -0.8411 9 6 5.7142 5.0119 1.3081 10 6 6.1871 4.1684 2.4938 11 6 7.6221 4.3291 -0.1213 12 8 8.2923 3.6498 0.6270 13 7 8.2205 5.0856 -1.0626 14 6 9.6066 5.2168 -1.0729 15 6 10.4026 4.2137 -0.5200 16 6 11.7611 4.3324 -0.5315 17 6 12.3597 5.4774 -1.0929 18 6 13.7648 5.6107 -1.1025 19 1 14.2148 6.5691 -1.3157 20 6 14.5746 4.5014 -0.8358 21 7 14.1022 3.2920 -0.9993 22 14 16.3300 4.7466 -0.2462 23 1 16.3218 5.5007 1.0331 24 1 16.9711 3.4237 -0.0363 25 1 17.0926 5.5105 -1.2660 26 6 11.5489 6.4888 -1.6443 27 6 10.1919 6.3533 -1.6305 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8890 36 1 3.9330 0.9288 0.8909 37 1 3.7163 3.3993 0.8895 38 1 3.7171 3.3983 -0.8904 39 1 5.9740 2.3704 -0.8880 40 1 5.9727 2.3718 0.8919 41 1 4.6296 5.1129 1.3437 42 1 6.1730 5.9993 1.3588 43 1 7.2609 3.9991 2.4140 44 1 5.6670 3.2105 2.4887 45 1 5.9703 4.6946 3.4234 46 1 7.6855 5.5388 -1.7330 47 1 9.9420 3.3388 -0.0854 48 1 12.3762 3.5530 -0.1066 49 1 14.6637 2.5229 -0.8148 50 1 12.0007 7.3696 -2.0760 51 1 9.5691 7.1278 -2.0533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734994774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:33 Heat of formation + Delta-G solvation = -58.032127 kcal Electronic energy + Delta-G solvation = -25942.007586 eV Core-core repulsion = 22418.404498 eV Total energy + Delta-G solvation = -3523.603087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.02113 -37.71894 -36.79214 -35.38187 -34.38920 -32.95219 -32.47836 -29.66145 -29.34442 -28.92220 -26.98762 -24.88047 -23.92738 -22.49006 -21.46168 -21.25026 -21.04414 -20.02072 -18.96776 -17.33223 -16.66760 -16.45065 -16.13804 -15.29051 -15.13987 -15.12787 -14.25894 -14.15042 -13.93489 -13.69787 -13.46677 -13.17930 -12.91968 -12.70596 -12.59731 -12.41726 -12.27429 -12.03394 -11.82133 -11.77105 -11.59876 -11.35433 -11.26003 -11.14559 -11.08267 -11.03468 -10.93985 -10.79517 -10.74800 -10.60279 -10.46868 -10.39824 -9.95236 -9.69318 -9.35973 -8.89299 -8.45278 -7.44586 -7.00556 -6.71378 -4.24265 2.63347 3.01402 3.06901 3.10103 3.19377 3.45201 3.79786 3.92083 4.45636 4.62395 4.62842 4.74417 4.79766 4.89529 4.94624 5.04488 5.19485 5.21267 5.30919 5.43113 5.46288 5.50058 5.59974 5.64307 5.68341 5.70234 5.78100 5.80782 5.83648 5.85486 5.94077 6.00710 6.03566 6.13259 6.18760 6.18808 6.25905 6.36622 6.50270 6.60882 6.92036 7.00688 7.12346 7.21246 7.37578 7.67581 7.75305 8.09004 8.11139 8.29465 8.42244 8.70292 8.85755 8.92489 9.08258 10.13565 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002120 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.748283 B =13202.412748 C =13597.429528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.103 4.103 8 H 0.080 0.920 9 C -0.106 4.106 10 C -0.165 4.165 11 C 0.501 3.499 12 O -0.526 6.526 13 N -0.649 5.649 14 C -0.013 4.013 15 C -0.101 4.101 16 C -0.172 4.172 17 C 0.097 3.903 18 C -0.452 4.452 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.781 5.781 22 Si 0.909 3.091 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.265 1.265 26 C -0.221 4.221 27 C -0.108 4.108 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.393 0.607 47 H 0.126 0.874 48 H 0.133 0.867 49 H 0.282 0.718 50 H 0.093 0.907 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.005 -2.541 1.751 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.159 4.159 5 C -0.155 4.155 6 C -0.146 4.146 7 C -0.124 4.124 8 H 0.098 0.902 9 C -0.144 4.144 10 C -0.222 4.222 11 C 0.288 3.712 12 O -0.403 6.403 13 N -0.290 5.290 14 C -0.106 4.106 15 C -0.120 4.120 16 C -0.192 4.192 17 C 0.094 3.906 18 C -0.481 4.481 19 H 0.095 0.905 20 C -0.145 4.145 21 N -0.406 5.406 22 Si 0.733 3.267 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.190 1.190 26 C -0.241 4.241 27 C -0.128 4.128 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.226 0.774 47 H 0.143 0.857 48 H 0.150 0.850 49 H 0.093 0.907 50 H 0.111 0.889 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.468 -3.269 2.304 20.855 hybrid contribution 0.521 0.458 -0.285 0.750 sum -19.947 -2.811 2.019 20.245 Atomic orbital electron populations 1.21781 0.96077 1.01463 1.01710 1.21551 0.95676 0.97179 1.02035 1.21625 0.95650 0.96540 1.01906 1.21611 0.95010 0.97023 1.02237 1.21630 0.95161 0.96699 1.02047 1.21555 0.94993 0.94589 1.03467 1.21299 0.92699 0.98640 0.99804 0.90206 1.21360 1.00630 0.98941 0.93437 1.22006 1.04312 0.99345 0.96508 1.20505 0.89722 0.80441 0.80492 1.90549 1.65190 1.41127 1.43480 1.43074 1.06770 1.49150 1.29999 1.17324 0.80456 0.98243 1.14536 1.21081 0.93859 0.97632 0.99477 1.21411 0.93033 1.00874 1.03896 1.17699 0.93126 0.91251 0.88505 1.19567 0.91262 0.96022 1.41255 0.90463 1.25983 1.01124 0.94550 0.92824 1.69839 1.38031 0.99274 1.33452 0.86358 0.81370 0.78524 0.80450 1.18759 1.20279 1.18960 1.20430 0.92454 1.01589 1.09643 1.19962 0.95128 0.94951 1.02809 0.92834 0.92921 0.92835 0.92085 0.92075 0.92124 0.92144 0.92023 0.91935 0.91655 0.92151 0.91938 0.90147 0.91348 0.91963 0.89984 0.92616 0.93511 0.77400 0.85662 0.84966 0.90713 0.88900 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.86 5.21 -26.73 -0.14 -1.00 16 4 C -0.12 -1.00 5.21 -26.73 -0.14 -1.14 16 5 C -0.12 -1.02 4.97 -26.73 -0.13 -1.16 16 6 C -0.11 -1.23 4.11 -26.73 -0.11 -1.34 16 7 C -0.10 -1.25 2.56 -91.77 -0.24 -1.49 16 8 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 9 C -0.11 -1.21 5.29 -26.73 -0.14 -1.35 16 10 C -0.16 -2.09 9.02 37.16 0.34 -1.76 16 11 C 0.50 8.68 6.44 -10.99 -0.07 8.61 16 12 O -0.53 -11.09 11.25 5.56 0.06 -11.03 16 13 N -0.65 -11.64 5.33 -9.74 -0.05 -11.69 16 14 C -0.01 -0.30 6.47 -83.57 -0.54 -0.84 16 15 C -0.10 -2.58 8.76 -39.79 -0.35 -2.93 16 16 C -0.17 -4.73 8.76 -39.26 -0.34 -5.08 16 17 C 0.10 2.65 5.67 -106.80 -0.61 2.05 16 18 C -0.45 -12.16 9.05 -37.85 -0.34 -12.50 16 19 H 0.08 1.98 7.93 -52.49 -0.42 1.56 16 20 C 0.07 1.88 5.16 -17.34 -0.09 1.79 16 21 N -0.78 -20.43 10.56 55.55 0.59 -19.85 16 22 Si 0.91 18.81 29.61 -169.99 -5.03 13.77 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 26 C -0.22 -5.48 9.74 -39.26 -0.38 -5.86 16 27 C -0.11 -2.43 9.87 -39.79 -0.39 -2.82 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.42 8.14 -51.94 -0.42 0.00 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.54 6.71 -51.93 -0.35 0.19 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.02 6.09 -51.93 -0.32 0.71 16 41 H 0.07 0.62 6.89 -51.93 -0.36 0.27 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.33 5.77 -51.93 -0.30 1.03 16 44 H 0.05 0.65 6.50 -51.93 -0.34 0.31 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.39 5.57 8.64 -40.82 -0.35 5.22 16 47 H 0.13 3.24 5.39 -52.48 -0.28 2.96 16 48 H 0.13 3.76 5.55 -52.49 -0.29 3.47 16 49 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 50 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 51 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 397.88 15.07 6.00 6.00 Total: -1.00 -29.47 397.88 -10.80 -40.27 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -8.89 Total: 10.95 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -3.47 Total: -28.42 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.53 Total: -31.54 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.06 Total: -11.03 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.47 -10.80 -40.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734994774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.759 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds