Wall clock time and date at job start Tue Mar 31 2020 12:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 C 1.52999 * 109.47277 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47277 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47409 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47409 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46523 * 305.00293 * 7 6 5 9 9 C 1.53004 * 109.47055 * 64.99947 * 7 6 5 10 10 C 1.53002 * 109.46773 * 53.57200 * 9 7 6 11 11 C 1.50697 * 109.46976 * 185.00114 * 7 6 5 12 12 O 1.21272 * 120.00118 * 308.70393 * 11 7 6 13 13 N 1.34778 * 119.99879 * 128.70245 * 11 7 6 14 14 C 1.39233 * 120.00222 * 172.12662 * 13 11 7 15 15 C 1.39481 * 119.83331 * 25.88406 * 14 13 11 16 16 C 1.36377 * 120.17019 * 179.71719 * 15 14 13 17 17 C 1.40866 * 119.82526 * 0.57330 * 16 15 14 18 18 C 1.41153 * 120.16244 * 179.67924 * 17 16 15 19 19 H 1.08001 * 119.99687 * 194.24721 * 18 17 16 20 20 C 1.39907 * 119.99780 * 14.24658 * 18 17 16 21 21 N 1.30867 * 120.00384 * 21.91572 * 20 18 17 22 22 Si 1.86799 * 119.99715 * 201.91677 * 20 18 17 23 23 H 1.48499 * 109.47395 * 59.99934 * 22 20 18 24 24 H 1.48497 * 109.47216 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47352 * 300.00058 * 22 20 18 26 26 C 1.40870 * 119.67382 * 359.69795 * 17 16 15 27 27 C 1.36378 * 119.82669 * 0.02562 * 26 17 16 28 28 H 1.08999 * 109.46958 * 59.99861 * 1 2 3 29 29 H 1.08997 * 109.47493 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47225 * 300.00497 * 1 2 3 31 31 H 1.08989 * 109.47131 * 239.99952 * 2 1 3 32 32 H 1.09005 * 109.46996 * 119.99719 * 2 1 3 33 33 H 1.09003 * 109.46937 * 59.99864 * 3 2 1 34 34 H 1.08999 * 109.47240 * 299.99966 * 3 2 1 35 35 H 1.08990 * 109.47108 * 59.99401 * 4 3 2 36 36 H 1.09005 * 109.46996 * 299.99719 * 4 3 2 37 37 H 1.09003 * 109.46937 * 59.99864 * 5 4 3 38 38 H 1.08999 * 109.47240 * 299.99966 * 5 4 3 39 39 H 1.08998 * 109.46445 * 59.99614 * 6 5 4 40 40 H 1.08999 * 109.47181 * 300.00356 * 6 5 4 41 41 H 1.08995 * 109.46989 * 293.57043 * 9 7 6 42 42 H 1.08995 * 109.46783 * 173.56818 * 9 7 6 43 43 H 1.08996 * 109.47228 * 55.42730 * 10 9 7 44 44 H 1.08996 * 109.47316 * 295.42808 * 10 9 7 45 45 H 1.09002 * 109.46742 * 175.42664 * 10 9 7 46 46 H 0.97007 * 119.99854 * 352.13218 * 13 11 7 47 47 H 1.08004 * 119.91344 * 359.97438 * 15 14 13 48 48 H 1.07995 * 120.08242 * 180.25022 * 16 15 14 49 49 H 0.96998 * 120.00274 * 179.97438 * 21 20 18 50 50 H 1.07998 * 120.08362 * 179.97438 * 26 17 16 51 51 H 1.08000 * 119.90846 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6101 2.8850 0.0013 7 6 6.1201 4.3274 0.0013 8 1 5.6861 4.8662 -0.8411 9 6 5.7142 5.0119 1.3081 10 6 6.1871 4.1684 2.4938 11 6 7.6221 4.3291 -0.1213 12 8 8.2923 3.6498 0.6270 13 7 8.2205 5.0856 -1.0626 14 6 9.6066 5.2168 -1.0729 15 6 10.4026 4.2137 -0.5200 16 6 11.7611 4.3324 -0.5315 17 6 12.3597 5.4774 -1.0929 18 6 13.7648 5.6107 -1.1025 19 1 14.2148 6.5691 -1.3157 20 6 14.5746 4.5014 -0.8358 21 7 14.1022 3.2920 -0.9993 22 14 16.3300 4.7466 -0.2462 23 1 16.3218 5.5007 1.0331 24 1 16.9711 3.4237 -0.0363 25 1 17.0926 5.5105 -1.2660 26 6 11.5489 6.4888 -1.6443 27 6 10.1919 6.3533 -1.6305 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8890 36 1 3.9330 0.9288 0.8909 37 1 3.7163 3.3993 0.8895 38 1 3.7171 3.3983 -0.8904 39 1 5.9740 2.3704 -0.8880 40 1 5.9727 2.3718 0.8919 41 1 4.6296 5.1129 1.3437 42 1 6.1730 5.9993 1.3588 43 1 7.2609 3.9991 2.4140 44 1 5.6670 3.2105 2.4887 45 1 5.9703 4.6946 3.4234 46 1 7.6855 5.5388 -1.7330 47 1 9.9420 3.3388 -0.0854 48 1 12.3762 3.5530 -0.1066 49 1 14.6637 2.5229 -0.8148 50 1 12.0007 7.3696 -2.0760 51 1 9.5691 7.1278 -2.0533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734994774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:32 Heat of formation + Delta-G solvation = -71.628495 kcal Electronic energy + Delta-G solvation = -25942.597168 eV Core-core repulsion = 22418.404498 eV Total energy + Delta-G solvation = -3524.192670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.46334 -39.32595 -37.83276 -36.40664 -35.97729 -34.73020 -33.21212 -31.40884 -31.00210 -30.15247 -28.05501 -26.53346 -24.75787 -23.70474 -23.19038 -22.46276 -21.81317 -21.39279 -20.24797 -19.27461 -18.15583 -17.83673 -16.98708 -16.95145 -16.39284 -16.06729 -15.81346 -15.36049 -14.90724 -14.85527 -14.58233 -14.48176 -14.17179 -14.13556 -13.91946 -13.60579 -13.52858 -13.22095 -13.14978 -12.95601 -12.87232 -12.76069 -12.57976 -12.38557 -12.35711 -12.14688 -11.80712 -11.77483 -11.73678 -11.62255 -11.50586 -11.38508 -11.24264 -11.21976 -11.11965 -10.73606 -10.05035 -9.41553 -8.89194 -8.59969 -6.23644 0.85427 1.17076 1.35864 1.46335 1.50698 1.87964 2.18255 2.43111 2.72810 3.70468 3.73706 3.79480 3.96485 4.06711 4.09755 4.22365 4.33791 4.38186 4.44973 4.47091 4.53102 4.60074 4.63361 4.70495 4.80140 4.86665 4.89326 4.98894 5.01696 5.04726 5.05695 5.09856 5.12570 5.17429 5.22861 5.25222 5.28919 5.32661 5.34233 5.36058 5.44346 5.49837 5.55397 5.55978 5.63798 5.72337 5.90132 6.12217 6.18083 6.35487 6.71869 6.84241 6.92999 7.04661 7.49955 8.26745 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002120 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.748283 B =13202.412748 C =13597.429528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.115 4.115 4 C -0.121 4.121 5 C -0.108 4.108 6 C -0.105 4.105 7 C -0.091 4.091 8 H 0.116 0.884 9 C -0.103 4.103 10 C -0.164 4.164 11 C 0.495 3.505 12 O -0.567 6.567 13 N -0.644 5.644 14 C 0.000 4.000 15 C -0.118 4.118 16 C -0.201 4.201 17 C 0.063 3.937 18 C -0.489 4.489 19 H 0.081 0.919 20 C 0.030 3.970 21 N -0.816 5.816 22 Si 0.985 3.015 23 H -0.262 1.262 24 H -0.268 1.268 25 H -0.253 1.253 26 C -0.231 4.231 27 C -0.104 4.104 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.416 0.584 47 H 0.115 0.885 48 H 0.111 0.889 49 H 0.288 0.712 50 H 0.108 0.892 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.444 -0.976 1.255 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.152 4.152 4 C -0.159 4.159 5 C -0.146 4.146 6 C -0.143 4.143 7 C -0.112 4.112 8 H 0.134 0.866 9 C -0.141 4.141 10 C -0.221 4.221 11 C 0.285 3.715 12 O -0.446 6.446 13 N -0.287 5.287 14 C -0.094 4.094 15 C -0.138 4.138 16 C -0.221 4.221 17 C 0.060 3.940 18 C -0.518 4.518 19 H 0.099 0.901 20 C -0.186 4.186 21 N -0.441 5.441 22 Si 0.805 3.195 23 H -0.187 1.187 24 H -0.192 1.192 25 H -0.177 1.177 26 C -0.251 4.251 27 C -0.124 4.124 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.253 0.747 47 H 0.133 0.867 48 H 0.128 0.872 49 H 0.099 0.901 50 H 0.126 0.874 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.958 -1.691 1.783 23.089 hybrid contribution 1.118 -0.073 -0.118 1.127 sum -21.840 -1.764 1.664 21.974 Atomic orbital electron populations 1.21773 0.95391 1.01778 1.02004 1.21566 0.96305 0.97111 1.01708 1.21582 0.94583 0.96690 1.02387 1.21598 0.95914 0.96810 1.01585 1.21571 0.92587 0.97107 1.03304 1.21525 0.97126 0.93648 1.02021 1.21360 0.88233 0.99815 1.01816 0.86615 1.21416 1.02745 0.97999 0.91893 1.21964 1.01611 1.00465 0.98075 1.21593 0.91991 0.78778 0.79145 1.90548 1.66774 1.42536 1.44773 1.43052 1.04892 1.49680 1.31120 1.17404 0.82744 0.97113 1.12151 1.21136 0.93673 0.98507 1.00497 1.21327 0.93796 1.01273 1.05716 1.18058 0.94152 0.92097 0.89656 1.19850 0.91732 0.96821 1.43392 0.90102 1.26914 1.05640 0.93811 0.92189 1.69909 1.39899 1.00213 1.34127 0.85210 0.75633 0.78828 0.79806 1.18685 1.19220 1.17716 1.20718 0.93575 1.01455 1.09315 1.20334 0.94773 0.95560 1.01686 0.92508 0.92670 0.92545 0.92428 0.92478 0.91641 0.91559 0.92656 0.92774 0.90562 0.90549 0.93046 0.92173 0.87668 0.92382 0.94181 0.91799 0.92315 0.74741 0.86733 0.87154 0.90085 0.87434 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.13 -1.59 5.93 30.59 0.18 -1.41 16 3 C -0.11 -1.39 5.21 30.59 0.16 -1.23 16 4 C -0.12 -1.78 5.21 30.59 0.16 -1.62 16 5 C -0.11 -1.54 4.97 30.59 0.15 -1.39 16 6 C -0.11 -2.21 4.11 30.59 0.13 -2.08 16 7 C -0.09 -1.98 2.56 -11.54 -0.03 -2.01 16 8 H 0.12 1.75 7.94 -2.39 -0.02 1.73 16 9 C -0.10 -2.04 5.29 30.60 0.16 -1.88 16 10 C -0.16 -4.01 9.02 71.98 0.65 -3.36 16 11 C 0.50 16.76 6.44 87.66 0.56 17.33 16 12 O -0.57 -24.68 11.25 -3.01 -0.03 -24.71 16 13 N -0.64 -21.99 5.33 -303.13 -1.62 -23.61 16 14 C 0.00 -0.01 6.47 38.56 0.25 0.24 16 15 C -0.12 -6.31 8.76 22.14 0.19 -6.12 16 16 C -0.20 -11.68 8.76 22.48 0.20 -11.48 16 17 C 0.06 3.58 5.67 -21.28 -0.12 3.46 16 18 C -0.49 -27.25 9.05 23.39 0.21 -27.03 16 19 H 0.08 4.25 7.93 -2.91 -0.02 4.23 16 20 C 0.03 1.56 5.16 85.24 0.44 2.00 16 21 N -0.82 -44.68 10.56 21.82 0.23 -44.45 16 22 Si 0.99 39.29 29.61 68.60 2.03 41.32 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 25 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 26 C -0.23 -11.44 9.74 22.48 0.22 -11.22 16 27 C -0.10 -4.49 9.87 22.13 0.22 -4.27 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.08 0.95 6.71 -2.39 -0.02 0.93 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.51 6.09 -2.39 -0.01 1.50 16 41 H 0.11 1.40 6.89 -2.39 -0.02 1.38 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.04 1.33 5.77 -2.39 -0.01 1.32 16 44 H 0.06 1.42 6.50 -2.39 -0.02 1.40 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.42 10.36 8.64 -92.70 -0.80 9.56 16 47 H 0.12 6.29 5.39 -2.91 -0.02 6.28 16 48 H 0.11 6.77 5.55 -2.91 -0.02 6.76 16 49 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 50 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 51 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -68.82 397.88 5.16 -63.66 By element: Atomic # 1 Polarization: 40.64 SS G_CDS: 0.10 Total: 40.74 kcal Atomic # 6 Polarization: -57.41 SS G_CDS: 4.45 Total: -52.96 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -1.39 Total: -68.05 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.03 Total: -24.71 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -68.82 5.16 -63.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734994774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.968 kcal (2) G-P(sol) polarization free energy of solvation -68.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds