Wall clock time and date at job start Tue Mar 31 2020 12:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47049 * 2 1 4 4 C 1.53006 * 109.47049 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.50028 * 59.99730 * 4 3 2 6 6 C 1.53110 * 109.50135 * 299.91830 * 4 3 2 7 7 C 1.53119 * 109.16313 * 182.40473 * 6 4 3 8 8 C 1.53039 * 109.27649 * 57.65156 * 7 6 4 9 9 N 1.46852 * 109.52512 * 300.82555 * 8 7 6 10 10 C 1.46902 * 110.99799 * 185.84064 * 9 8 7 11 11 C 1.50698 * 109.47018 * 293.94725 * 10 9 8 12 12 C 1.38297 * 119.93556 * 269.73015 * 11 10 9 13 13 C 1.38101 * 120.06908 * 179.72253 * 12 11 10 14 14 C 1.38879 * 119.93025 * 0.55223 * 13 12 11 15 15 O 1.35758 * 120.06989 * 179.74265 * 14 13 12 16 16 C 1.34825 * 117.00118 * 174.43959 * 15 14 13 17 17 H 1.07997 * 119.99893 * 5.06411 * 16 15 14 18 18 C 1.38651 * 119.99984 * 185.05479 * 16 15 14 19 19 N 1.31561 * 119.99867 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00032 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47273 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47393 * 120.00390 * 20 18 16 23 23 H 1.48504 * 109.47520 * 240.00601 * 20 18 16 24 24 C 1.38878 * 119.86281 * 359.72349 * 14 13 12 25 25 C 1.38098 * 119.93035 * 359.97438 * 24 14 13 26 26 C 1.46846 * 111.23124 * 61.72079 * 9 8 7 27 27 H 1.09001 * 109.46786 * 60.00024 * 1 2 3 28 28 H 1.08999 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46980 * 300.00170 * 1 2 3 30 30 H 1.08997 * 109.47221 * 239.99373 * 2 1 3 31 31 H 1.09001 * 109.46986 * 119.99217 * 2 1 3 32 32 H 1.09001 * 109.46855 * 299.99941 * 3 2 1 33 33 H 1.08997 * 109.47621 * 59.99618 * 3 2 1 34 34 H 1.09000 * 109.47750 * 60.00632 * 5 4 3 35 35 H 1.09008 * 109.46641 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47160 * 299.99378 * 5 4 3 37 37 H 1.09008 * 109.52554 * 302.30812 * 6 4 3 38 38 H 1.08999 * 109.52636 * 62.50029 * 6 4 3 39 39 H 1.08995 * 109.50985 * 177.59200 * 7 6 4 40 40 H 1.08998 * 109.50338 * 297.71978 * 7 6 4 41 41 H 1.09000 * 109.46507 * 60.84012 * 8 7 6 42 42 H 1.08999 * 109.46230 * 180.81665 * 8 7 6 43 43 H 1.08994 * 109.47362 * 53.95224 * 10 9 8 44 44 H 1.09003 * 109.46961 * 173.95422 * 10 9 8 45 45 H 1.08002 * 119.96519 * 0.02562 * 12 11 10 46 46 H 1.08003 * 120.03140 * 180.27027 * 13 12 11 47 47 H 0.97001 * 119.99787 * 179.97438 * 19 18 16 48 48 H 1.08000 * 120.03216 * 179.97438 * 24 14 13 49 49 H 1.07992 * 119.96798 * 180.02562 * 25 24 14 50 50 H 1.09002 * 109.49258 * 178.28223 * 26 9 8 51 51 H 1.09001 * 109.42909 * 58.31466 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0813 0.7211 -1.2480 6 6 4.0807 0.7228 1.2519 7 6 5.6106 0.7797 1.2753 8 6 6.0624 2.2415 1.2413 9 7 5.5492 2.8856 0.0254 10 6 6.0774 4.2496 -0.1107 11 6 5.5406 5.1097 1.0043 12 6 4.3572 5.8041 0.8317 13 6 3.8599 6.5885 1.8537 14 6 4.5553 6.6887 3.0517 15 8 4.0717 7.4631 4.0563 16 6 4.7331 7.4258 5.2306 17 1 5.6514 6.8637 5.3155 18 6 4.2346 8.1093 6.3291 19 7 3.1159 8.7939 6.2256 20 14 5.1513 8.0583 7.9558 21 1 6.3726 7.2262 7.8099 22 1 5.5366 9.4371 8.3504 23 1 4.2740 7.4714 9.0003 24 6 5.7464 5.9946 3.2198 25 6 6.2353 5.2069 2.1963 26 6 4.0810 2.8851 0.0025 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.7188 1.2347 -2.1385 35 1 5.1714 0.7219 -1.2472 36 1 3.7184 -0.3066 -1.2480 37 1 3.6843 1.2129 2.1413 38 1 3.7552 -0.3172 1.2323 39 1 5.9786 0.3063 2.1855 40 1 6.0076 0.2559 0.4058 41 1 5.6766 2.7615 2.1181 42 1 7.1515 2.2852 1.2432 43 1 7.1658 4.2247 -0.0587 44 1 5.7688 4.6646 -1.0703 45 1 3.8188 5.7291 -0.1015 46 1 2.9333 7.1272 1.7199 47 1 2.7669 9.2717 6.9943 48 1 6.2897 6.0708 4.1501 49 1 7.1613 4.6666 2.3266 50 1 3.7310 3.3955 -0.8947 51 1 3.7044 3.4025 0.8849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743872291.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:26 Heat of formation + Delta-G solvation = -25.754976 kcal Electronic energy + Delta-G solvation = -27456.195403 eV Core-core repulsion = 23933.991958 eV Total energy + Delta-G solvation = -3522.203445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.12471 -38.89904 -37.05537 -35.45296 -33.14413 -32.23607 -31.57385 -30.23020 -29.29576 -27.04332 -26.41252 -26.00016 -25.10721 -22.97057 -22.41892 -21.64401 -20.92552 -20.02358 -18.25978 -17.97906 -16.95537 -15.88514 -15.37062 -15.12941 -14.92651 -14.56782 -14.48127 -14.37021 -14.13816 -13.83870 -13.58999 -13.51561 -13.26245 -13.12728 -12.75833 -12.66560 -12.27911 -12.08088 -11.97302 -11.74294 -11.70732 -11.51098 -11.29789 -11.26707 -11.08032 -10.97897 -10.93961 -10.77668 -10.59344 -10.53522 -10.44837 -10.34267 -10.06617 -9.95444 -9.36167 -8.86183 -8.20174 -8.07857 -7.20320 -6.48379 -4.07279 2.17643 2.25883 3.09571 3.11223 3.16731 3.93697 4.11782 4.55451 4.63360 4.77729 4.81131 5.00143 5.05155 5.06699 5.15365 5.23330 5.26570 5.38771 5.45616 5.47005 5.53185 5.55186 5.65564 5.66453 5.69632 5.76030 5.80521 5.81839 5.90364 5.93664 5.94088 6.00141 6.04750 6.06636 6.10668 6.14228 6.17508 6.22024 6.25348 6.29869 6.39217 6.44144 6.58072 6.67017 6.86843 7.01769 7.16506 7.24639 7.31063 7.39284 7.42904 7.79338 7.96730 8.97396 9.67376 10.69679 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014581 B = 0.003160 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.795307 B = 8857.234724 C = 9443.060540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.110 4.110 4 C -0.056 4.056 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.117 4.117 8 C 0.051 3.949 9 N -0.526 5.526 10 C 0.109 3.891 11 C -0.220 4.220 12 C -0.062 4.062 13 C -0.194 4.194 14 C 0.156 3.844 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.235 4.235 25 C -0.060 4.060 26 C 0.065 3.935 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.270 0.730 48 H 0.125 0.875 49 H 0.103 0.897 50 H 0.067 0.933 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 -16.236 -12.278 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.148 4.148 4 C -0.056 4.056 5 C -0.189 4.189 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.077 4.077 9 N -0.249 5.249 10 C -0.018 4.018 11 C -0.223 4.223 12 C -0.081 4.081 13 C -0.214 4.214 14 C 0.102 3.898 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.254 4.254 25 C -0.079 4.079 26 C -0.064 4.064 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.126 0.874 46 H 0.133 0.867 47 H 0.080 0.920 48 H 0.143 0.857 49 H 0.121 0.879 50 H 0.086 0.914 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.552 -16.212 -12.518 20.541 hybrid contribution 0.158 0.603 1.671 1.784 sum 1.710 -15.609 -10.846 19.084 Atomic orbital electron populations 1.21791 0.96256 1.01231 1.01803 1.21614 0.95370 0.97210 1.02032 1.21635 0.94445 0.96674 1.02059 1.20565 0.94157 0.95200 0.95710 1.21823 1.02119 0.98776 0.96220 1.21679 0.95602 1.00102 0.97481 1.21619 0.95873 0.96410 1.01544 1.22090 0.99276 0.94270 0.92045 1.62374 1.08090 1.17309 1.37102 1.20933 0.98847 0.86024 0.96041 1.19951 0.98989 1.05788 0.97524 1.20496 0.95035 0.95465 0.97108 1.20210 1.02037 1.05951 0.93159 1.19388 0.91655 0.89298 0.89445 1.83978 1.50624 1.54699 1.18836 1.21367 1.07085 1.33186 0.85159 0.89070 1.25292 0.96337 0.95909 0.98972 1.70050 1.19068 1.29369 1.31199 0.85653 0.78996 0.78487 0.80338 1.19104 1.20099 1.20095 1.21151 0.99077 1.04262 1.00946 1.20601 0.97851 0.96739 0.92689 1.22110 0.87768 0.95289 1.01183 0.92904 0.93101 0.92774 0.91868 0.91927 0.92052 0.91978 0.93397 0.91351 0.93502 0.92251 0.91967 0.92109 0.91288 0.93825 0.91466 0.91022 0.90935 0.87393 0.86692 0.92045 0.85714 0.87855 0.91440 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.12 -1.11 5.23 -26.73 -0.14 -1.25 16 3 C -0.11 -1.12 4.27 -26.73 -0.11 -1.24 16 4 C -0.06 -0.60 0.54 -154.43 -0.08 -0.68 16 5 C -0.13 -1.30 7.68 37.16 0.29 -1.02 16 6 C -0.11 -1.21 4.36 -26.61 -0.12 -1.33 16 7 C -0.12 -1.26 5.74 -26.65 -0.15 -1.41 16 8 C 0.05 0.64 4.82 -3.83 -0.02 0.63 16 9 N -0.53 -6.65 4.14 -236.11 -0.98 -7.63 16 10 C 0.11 1.46 5.55 -4.98 -0.03 1.43 16 11 C -0.22 -3.63 4.04 -104.57 -0.42 -4.05 16 12 C -0.06 -1.09 8.02 -39.61 -0.32 -1.41 16 13 C -0.19 -4.09 9.99 -39.39 -0.39 -4.49 16 14 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 15 O -0.18 -5.10 9.76 0.04 0.00 -5.10 16 16 C -0.39 -10.97 9.49 30.88 0.29 -10.67 16 17 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.29 13.67 55.48 0.76 -24.54 16 20 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 24 C -0.24 -5.08 9.17 -39.40 -0.36 -5.45 16 25 C -0.06 -1.08 8.10 -39.61 -0.32 -1.40 16 26 C 0.06 0.82 3.27 -3.84 -0.01 0.80 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 31 H 0.06 0.56 6.49 -51.93 -0.34 0.23 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.73 6.01 -51.92 -0.31 0.41 16 36 H 0.05 0.42 6.43 -51.93 -0.33 0.08 16 37 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 38 H 0.06 0.61 6.58 -51.93 -0.34 0.27 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.71 6.58 -51.93 -0.34 0.37 16 41 H 0.04 0.66 6.55 -51.93 -0.34 0.32 16 42 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 43 H 0.07 0.91 8.00 -51.93 -0.42 0.49 16 44 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 45 H 0.11 1.62 8.03 -52.49 -0.42 1.20 16 46 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 47 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 49 H 0.10 1.62 8.03 -52.49 -0.42 1.20 16 50 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 51 H 0.05 0.70 6.47 -51.93 -0.34 0.37 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -29.18 383.02 -10.07 -39.24 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.70 Total: 4.70 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -1.89 Total: -27.96 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: -0.22 Total: -32.16 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.18 -10.07 -39.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743872291.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.488 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds