Wall clock time and date at job start Tue Mar 31 2020 12:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46820 * 2 1 4 4 C 1.53002 * 109.47401 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.50306 * 299.92503 * 4 3 2 6 6 C 1.53128 * 109.49996 * 60.00102 * 4 3 2 7 7 C 1.53121 * 109.16065 * 177.59615 * 6 4 3 8 8 C 1.53034 * 109.27786 * 302.34872 * 7 6 4 9 9 N 1.46843 * 109.52634 * 59.17542 * 8 7 6 10 10 C 1.46903 * 111.00179 * 174.16082 * 9 8 7 11 11 C 1.50710 * 109.47000 * 314.21343 * 10 9 8 12 12 C 1.38293 * 119.92880 * 269.72818 * 11 10 9 13 13 C 1.38104 * 120.07057 * 179.72872 * 12 11 10 14 14 C 1.38877 * 119.92486 * 0.56014 * 13 12 11 15 15 O 1.35756 * 120.06990 * 179.68424 * 14 13 12 16 16 C 1.34828 * 117.00103 * 174.48822 * 15 14 13 17 17 H 1.08004 * 120.00167 * 5.06371 * 16 15 14 18 18 C 1.38657 * 120.00055 * 185.06137 * 16 15 14 19 19 N 1.31554 * 120.00061 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99789 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47015 * 90.00126 * 20 18 16 22 22 H 1.48502 * 109.47281 * 209.99964 * 20 18 16 23 23 H 1.48504 * 109.47198 * 330.00064 * 20 18 16 24 24 C 1.38885 * 119.86443 * 359.71274 * 14 13 12 25 25 C 1.38099 * 119.92856 * 359.97438 * 24 14 13 26 26 C 1.46849 * 111.20196 * 298.26011 * 9 8 7 27 27 H 1.09001 * 109.47270 * 299.99889 * 1 2 3 28 28 H 1.08994 * 109.47658 * 60.00042 * 1 2 3 29 29 H 1.09007 * 109.46835 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47270 * 240.00111 * 2 1 3 31 31 H 1.08997 * 109.47406 * 119.99502 * 2 1 3 32 32 H 1.09001 * 109.47396 * 60.00479 * 3 2 1 33 33 H 1.08998 * 109.47621 * 300.00075 * 3 2 1 34 34 H 1.09000 * 109.46855 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.47129 * 300.06918 * 5 4 3 36 36 H 1.09000 * 109.47284 * 60.07308 * 5 4 3 37 37 H 1.08998 * 109.52100 * 297.50462 * 6 4 3 38 38 H 1.08995 * 109.52109 * 57.69018 * 6 4 3 39 39 H 1.09001 * 109.50291 * 62.28708 * 7 6 4 40 40 H 1.08996 * 109.50306 * 182.40601 * 7 6 4 41 41 H 1.09009 * 109.46089 * 299.16080 * 8 7 6 42 42 H 1.09003 * 109.45272 * 179.19184 * 8 7 6 43 43 H 1.08996 * 109.47325 * 74.20876 * 10 9 8 44 44 H 1.08999 * 109.47348 * 194.21472 * 10 9 8 45 45 H 1.08007 * 119.97054 * 359.97337 * 12 11 10 46 46 H 1.07999 * 120.04203 * 180.27235 * 13 12 11 47 47 H 0.96999 * 120.00368 * 179.97438 * 19 18 16 48 48 H 1.07999 * 120.03310 * 180.02562 * 24 14 13 49 49 H 1.08005 * 119.96346 * 180.02562 * 25 24 14 50 50 H 1.09003 * 109.46030 * 301.72363 * 26 9 8 51 51 H 1.08996 * 109.45970 * 181.75654 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0802 0.7234 1.2509 6 6 4.0817 0.7208 -1.2491 7 6 5.6116 0.7778 -1.2713 8 6 6.0633 2.2397 -1.2393 9 7 5.5491 2.8858 -0.0251 10 6 6.0769 4.2501 0.1092 11 6 7.5597 4.2439 -0.1605 12 6 8.4495 4.0505 0.8804 13 6 9.8086 4.0387 0.6357 14 6 10.2818 4.2328 -0.6555 15 8 11.6175 4.2281 -0.8983 16 6 12.0056 4.3077 -2.1870 17 1 11.2703 4.4535 -2.9645 18 6 13.3489 4.2023 -2.5143 19 7 13.7277 4.2804 -3.7717 20 14 14.6207 3.9494 -1.1697 21 1 14.8176 2.4953 -0.9418 22 1 15.9075 4.5643 -1.5835 23 1 14.1480 4.5876 0.0851 24 6 9.3858 4.4323 -1.6977 25 6 8.0277 4.4366 -1.4475 26 6 4.0807 2.8852 -0.0043 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 5.1702 0.7243 1.2510 35 1 3.7158 1.2377 2.1401 36 1 3.7184 -0.3047 1.2518 37 1 3.7561 -0.3192 -1.2280 38 1 3.6860 1.2093 -2.1395 39 1 6.0079 0.2554 -0.4006 40 1 5.9803 0.3029 -2.1804 41 1 5.6781 2.7581 -2.1175 42 1 7.1524 2.2832 -1.2405 43 1 5.5801 4.9041 -0.6074 44 1 5.8931 4.6129 1.1205 45 1 8.0811 3.9047 1.8851 46 1 10.5029 3.8833 1.4482 47 1 14.6674 4.2071 -4.0006 48 1 9.7508 4.5831 -2.7029 49 1 7.3304 4.5913 -2.2576 50 1 3.7049 3.4006 -0.8882 51 1 3.7300 3.3978 0.8914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743872292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:29 Heat of formation + Delta-G solvation = -21.372299 kcal Electronic energy + Delta-G solvation = -26906.309742 eV Core-core repulsion = 23384.296345 eV Total energy + Delta-G solvation = -3522.013398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.11048 -39.10915 -37.20997 -35.61450 -33.21210 -32.36084 -31.61114 -30.27096 -29.79615 -27.10806 -26.37509 -26.17402 -24.91593 -23.02694 -22.31485 -21.99439 -20.92017 -19.98648 -18.32791 -17.87563 -17.23363 -16.08063 -15.49636 -15.25497 -15.08050 -14.69416 -14.49674 -14.23516 -14.04480 -13.88707 -13.73291 -13.66796 -13.44072 -13.13654 -12.80451 -12.65638 -12.41367 -12.18596 -12.15521 -11.93349 -11.86087 -11.67036 -11.54409 -11.39601 -11.14298 -11.08262 -10.79722 -10.73889 -10.66692 -10.57354 -10.46927 -10.16827 -10.12598 -10.00545 -9.39420 -8.87508 -8.25549 -8.15385 -7.29692 -6.42761 -4.09321 2.11864 2.17499 3.21365 3.25223 3.39796 3.98403 4.22876 4.49115 4.53292 4.65719 4.68288 4.85646 4.87319 4.95727 5.05707 5.09562 5.16605 5.24980 5.34968 5.37387 5.40162 5.46178 5.52807 5.57201 5.60617 5.62560 5.64790 5.73262 5.75794 5.77885 5.81845 5.90264 5.91366 5.92786 6.02883 6.03878 6.12430 6.13646 6.19853 6.22563 6.34744 6.37955 6.53017 6.57269 6.78391 7.00865 7.18357 7.25630 7.28383 7.33082 7.60583 7.78865 8.02760 8.92569 9.55156 10.64849 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.028671 B = 0.002444 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.376163 B =11455.654061 C =11681.406002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.056 4.056 5 C -0.134 4.134 6 C -0.110 4.110 7 C -0.119 4.119 8 C 0.053 3.947 9 N -0.529 5.529 10 C 0.112 3.888 11 C -0.175 4.175 12 C -0.055 4.055 13 C -0.194 4.194 14 C 0.161 3.839 15 O -0.217 6.217 16 C -0.389 4.389 17 H 0.106 0.894 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.221 4.221 25 C -0.067 4.067 26 C 0.066 3.934 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.090 0.910 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.279 0.721 48 H 0.132 0.868 49 H 0.104 0.896 50 H 0.028 0.972 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.697 -6.174 7.671 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.146 4.146 4 C -0.056 4.056 5 C -0.191 4.191 6 C -0.148 4.148 7 C -0.157 4.157 8 C -0.075 4.075 9 N -0.253 5.253 10 C -0.015 4.015 11 C -0.176 4.176 12 C -0.074 4.074 13 C -0.214 4.214 14 C 0.109 3.891 15 O -0.122 6.122 16 C -0.465 4.465 17 H 0.123 0.877 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.240 4.240 25 C -0.085 4.085 26 C -0.062 4.062 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.108 0.892 43 H 0.049 0.951 44 H 0.092 0.908 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.089 0.911 48 H 0.149 0.851 49 H 0.122 0.878 50 H 0.046 0.954 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.142 -6.445 8.056 24.427 hybrid contribution 0.300 0.457 -0.538 0.767 sum -21.842 -5.988 7.517 23.863 Atomic orbital electron populations 1.21785 0.96263 1.01359 1.01602 1.21626 0.95314 0.97140 1.02329 1.21627 0.94481 0.96806 1.01694 1.20563 0.93956 0.94912 0.96195 1.21828 1.02620 0.98786 0.95875 1.21694 0.95982 1.00159 0.96920 1.21648 0.95264 0.96685 1.02097 1.22195 1.01593 0.93796 0.89921 1.62022 1.06634 1.18222 1.38404 1.20823 0.91777 0.88343 1.00531 1.19157 0.93752 1.10991 0.93716 1.20465 0.91718 0.97326 0.97845 1.20218 0.95308 1.11042 0.94799 1.19145 0.83783 0.92882 0.93283 1.83576 1.18118 1.80700 1.29838 1.20759 0.94494 1.51048 0.80174 0.87667 1.24472 0.97002 0.95752 0.96814 1.69643 1.17946 1.47850 1.16299 0.86178 0.79609 0.79062 0.82038 1.19868 1.20800 1.18361 1.21233 0.92860 1.09687 1.00261 1.20660 0.94702 0.97817 0.95366 1.22097 0.88071 0.95838 1.00171 0.92920 0.92955 0.92987 0.91822 0.91648 0.92066 0.92334 0.90948 0.93341 0.93371 0.91850 0.92631 0.90924 0.91883 0.95626 0.89191 0.95118 0.90789 0.86808 0.86587 0.91052 0.85052 0.87759 0.95419 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.91 5.23 -26.73 -0.14 -1.05 16 3 C -0.11 -0.84 4.27 -26.73 -0.11 -0.96 16 4 C -0.06 -0.51 0.54 -154.43 -0.08 -0.60 16 5 C -0.13 -1.27 7.68 37.16 0.29 -0.98 16 6 C -0.11 -1.06 4.36 -26.60 -0.12 -1.18 16 7 C -0.12 -1.35 5.74 -26.65 -0.15 -1.51 16 8 C 0.05 0.69 4.57 -3.84 -0.02 0.68 16 9 N -0.53 -6.59 4.08 -236.11 -0.96 -7.56 16 10 C 0.11 1.48 5.43 -4.97 -0.03 1.45 16 11 C -0.18 -2.82 4.13 -104.57 -0.43 -3.25 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 13 C -0.19 -3.82 9.99 -39.39 -0.39 -4.21 16 14 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 15 O -0.22 -5.72 8.59 0.04 0.00 -5.72 16 16 C -0.39 -10.93 9.95 30.89 0.31 -10.62 16 17 H 0.11 3.02 5.44 -52.48 -0.29 2.73 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 19 N -0.88 -25.35 13.96 55.48 0.77 -24.58 16 20 Si 0.91 21.67 28.62 -169.99 -4.86 16.80 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.22 -4.70 9.17 -39.39 -0.36 -5.06 16 25 C -0.07 -1.18 7.78 -39.61 -0.31 -1.49 16 26 C 0.07 0.70 4.15 -3.84 -0.02 0.68 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 30 H 0.06 0.47 6.49 -51.93 -0.34 0.13 16 31 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.81 6.01 -51.93 -0.31 0.50 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.41 6.44 -51.93 -0.33 0.08 16 37 H 0.06 0.56 6.58 -51.93 -0.34 0.22 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.86 6.58 -51.93 -0.34 0.52 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 42 H 0.09 1.42 5.64 -51.93 -0.29 1.12 16 43 H 0.03 0.40 8.02 -51.93 -0.42 -0.02 16 44 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 45 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 46 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 47 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.13 2.96 5.64 -52.49 -0.30 2.66 16 49 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 50 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -28.05 384.69 -9.96 -38.01 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.76 Total: 2.15 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -1.94 Total: -24.90 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: -0.19 Total: -32.13 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: 0.00 Total: -5.72 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.86 Total: 16.80 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.05 -9.96 -38.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743872292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.635 kcal (2) G-P(sol) polarization free energy of solvation -28.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds