Wall clock time and date at job start Tue Mar 31 2020 12:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46820 * 2 1 4 4 C 1.53002 * 109.47401 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.50306 * 299.92503 * 4 3 2 6 6 C 1.53128 * 109.49996 * 60.00102 * 4 3 2 7 7 C 1.53121 * 109.16065 * 177.59615 * 6 4 3 8 8 C 1.53034 * 109.27786 * 302.34872 * 7 6 4 9 9 N 1.46843 * 109.52634 * 59.17542 * 8 7 6 10 10 C 1.46903 * 111.00179 * 174.16082 * 9 8 7 11 11 C 1.50710 * 109.47000 * 314.21343 * 10 9 8 12 12 C 1.38293 * 119.92880 * 269.72818 * 11 10 9 13 13 C 1.38104 * 120.07057 * 179.72872 * 12 11 10 14 14 C 1.38877 * 119.92486 * 0.56014 * 13 12 11 15 15 O 1.35756 * 120.06990 * 179.68424 * 14 13 12 16 16 C 1.34828 * 117.00103 * 174.48822 * 15 14 13 17 17 H 1.08004 * 120.00167 * 5.06371 * 16 15 14 18 18 C 1.38657 * 120.00055 * 185.06137 * 16 15 14 19 19 N 1.31554 * 120.00061 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99789 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47015 * 90.00126 * 20 18 16 22 22 H 1.48502 * 109.47281 * 209.99964 * 20 18 16 23 23 H 1.48504 * 109.47198 * 330.00064 * 20 18 16 24 24 C 1.38885 * 119.86443 * 359.71274 * 14 13 12 25 25 C 1.38099 * 119.92856 * 359.97438 * 24 14 13 26 26 C 1.46849 * 111.20196 * 298.26011 * 9 8 7 27 27 H 1.09001 * 109.47270 * 299.99889 * 1 2 3 28 28 H 1.08994 * 109.47658 * 60.00042 * 1 2 3 29 29 H 1.09007 * 109.46835 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47270 * 240.00111 * 2 1 3 31 31 H 1.08997 * 109.47406 * 119.99502 * 2 1 3 32 32 H 1.09001 * 109.47396 * 60.00479 * 3 2 1 33 33 H 1.08998 * 109.47621 * 300.00075 * 3 2 1 34 34 H 1.09000 * 109.46855 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.47129 * 300.06918 * 5 4 3 36 36 H 1.09000 * 109.47284 * 60.07308 * 5 4 3 37 37 H 1.08998 * 109.52100 * 297.50462 * 6 4 3 38 38 H 1.08995 * 109.52109 * 57.69018 * 6 4 3 39 39 H 1.09001 * 109.50291 * 62.28708 * 7 6 4 40 40 H 1.08996 * 109.50306 * 182.40601 * 7 6 4 41 41 H 1.09009 * 109.46089 * 299.16080 * 8 7 6 42 42 H 1.09003 * 109.45272 * 179.19184 * 8 7 6 43 43 H 1.08996 * 109.47325 * 74.20876 * 10 9 8 44 44 H 1.08999 * 109.47348 * 194.21472 * 10 9 8 45 45 H 1.08007 * 119.97054 * 359.97337 * 12 11 10 46 46 H 1.07999 * 120.04203 * 180.27235 * 13 12 11 47 47 H 0.96999 * 120.00368 * 179.97438 * 19 18 16 48 48 H 1.07999 * 120.03310 * 180.02562 * 24 14 13 49 49 H 1.08005 * 119.96346 * 180.02562 * 25 24 14 50 50 H 1.09003 * 109.46030 * 301.72363 * 26 9 8 51 51 H 1.08996 * 109.45970 * 181.75654 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0802 0.7234 1.2509 6 6 4.0817 0.7208 -1.2491 7 6 5.6116 0.7778 -1.2713 8 6 6.0633 2.2397 -1.2393 9 7 5.5491 2.8858 -0.0251 10 6 6.0769 4.2501 0.1092 11 6 7.5597 4.2439 -0.1605 12 6 8.4495 4.0505 0.8804 13 6 9.8086 4.0387 0.6357 14 6 10.2818 4.2328 -0.6555 15 8 11.6175 4.2281 -0.8983 16 6 12.0056 4.3077 -2.1870 17 1 11.2703 4.4535 -2.9645 18 6 13.3489 4.2023 -2.5143 19 7 13.7277 4.2804 -3.7717 20 14 14.6207 3.9494 -1.1697 21 1 14.8176 2.4953 -0.9418 22 1 15.9075 4.5643 -1.5835 23 1 14.1480 4.5876 0.0851 24 6 9.3858 4.4323 -1.6977 25 6 8.0277 4.4366 -1.4475 26 6 4.0807 2.8852 -0.0043 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 5.1702 0.7243 1.2510 35 1 3.7158 1.2377 2.1401 36 1 3.7184 -0.3047 1.2518 37 1 3.7561 -0.3192 -1.2280 38 1 3.6860 1.2093 -2.1395 39 1 6.0079 0.2554 -0.4006 40 1 5.9803 0.3029 -2.1804 41 1 5.6781 2.7581 -2.1175 42 1 7.1524 2.2832 -1.2405 43 1 5.5801 4.9041 -0.6074 44 1 5.8931 4.6129 1.1205 45 1 8.0811 3.9047 1.8851 46 1 10.5029 3.8833 1.4482 47 1 14.6674 4.2071 -4.0006 48 1 9.7508 4.5831 -2.7029 49 1 7.3304 4.5913 -2.2576 50 1 3.7049 3.4006 -0.8882 51 1 3.7300 3.3978 0.8914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743872292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:28 Heat of formation + Delta-G solvation = -34.905527 kcal Electronic energy + Delta-G solvation = -26906.896587 eV Core-core repulsion = 23384.296345 eV Total energy + Delta-G solvation = -3522.600243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.22963 -40.55731 -38.68197 -36.65106 -34.52115 -33.99028 -32.43178 -31.81229 -31.17856 -27.87613 -27.75532 -27.08267 -26.46522 -24.04948 -23.70883 -23.02895 -22.03275 -21.17267 -19.79039 -19.13455 -19.06206 -17.04444 -16.69063 -16.55944 -16.11442 -15.98421 -15.68079 -15.52659 -15.41073 -15.24786 -14.90865 -14.70034 -14.58692 -14.36735 -14.13597 -14.01774 -13.84731 -13.50227 -13.09839 -12.90585 -12.82510 -12.64897 -12.55799 -12.45789 -12.39730 -12.24712 -12.07889 -11.94837 -11.89986 -11.86588 -11.35947 -11.28205 -11.17414 -10.94708 -10.88767 -10.84852 -9.78659 -9.24743 -8.89696 -8.50768 -6.23212 0.56025 0.61499 1.30771 1.34916 1.51413 2.27427 2.69487 2.96332 3.12612 3.28308 3.72816 3.85643 3.93677 4.00812 4.04446 4.14876 4.19062 4.29109 4.35348 4.41267 4.45169 4.53047 4.57143 4.66851 4.68912 4.71658 4.76290 4.77870 4.86418 4.93528 4.96547 4.99760 5.01854 5.05249 5.09168 5.15641 5.22088 5.25202 5.26624 5.34511 5.37074 5.38848 5.42365 5.50488 5.57171 5.60401 5.75028 5.75700 5.80610 5.90052 6.18274 6.21665 6.31245 6.83593 7.58258 8.60845 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.028671 B = 0.002444 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.376163 B =11455.654061 C =11681.406002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.052 4.052 5 C -0.130 4.130 6 C -0.106 4.106 7 C -0.117 4.117 8 C 0.055 3.945 9 N -0.530 5.530 10 C 0.112 3.888 11 C -0.147 4.147 12 C -0.048 4.048 13 C -0.192 4.192 14 C 0.121 3.879 15 O -0.245 6.245 16 C -0.398 4.398 17 H 0.080 0.920 18 C 0.009 3.991 19 N -0.923 5.923 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.267 1.267 23 H -0.263 1.263 24 C -0.236 4.236 25 C -0.064 4.064 26 C 0.066 3.934 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.022 0.978 42 H 0.060 0.940 43 H 0.040 0.960 44 H 0.096 0.904 45 H 0.152 0.848 46 H 0.128 0.872 47 H 0.285 0.715 48 H 0.105 0.895 49 H 0.123 0.877 50 H 0.028 0.972 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.595 -6.700 10.246 28.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.052 4.052 5 C -0.187 4.187 6 C -0.143 4.143 7 C -0.155 4.155 8 C -0.073 4.073 9 N -0.254 5.254 10 C -0.014 4.014 11 C -0.148 4.148 12 C -0.066 4.066 13 C -0.211 4.211 14 C 0.072 3.928 15 O -0.153 6.153 16 C -0.474 4.474 17 H 0.097 0.903 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.192 1.192 23 H -0.187 1.187 24 C -0.255 4.255 25 C -0.083 4.083 26 C -0.062 4.062 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.115 0.885 45 H 0.170 0.830 46 H 0.146 0.854 47 H 0.094 0.906 48 H 0.123 0.877 49 H 0.141 0.859 50 H 0.046 0.954 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.092 -6.972 10.645 28.135 hybrid contribution 0.817 0.604 -1.267 1.624 sum -24.275 -6.368 9.379 26.791 Atomic orbital electron populations 1.21775 0.95687 1.01713 1.01768 1.21608 0.95821 0.96631 1.02215 1.21572 0.93129 0.97323 1.02005 1.20543 0.94950 0.93983 0.95757 1.21774 1.01336 0.99454 0.96110 1.21666 0.94381 1.00986 0.97275 1.21615 0.96737 0.95306 1.01836 1.22096 0.99706 0.95177 0.90293 1.62040 1.08174 1.17397 1.37787 1.20894 0.89158 0.89218 1.02158 1.19595 0.95882 1.06715 0.92595 1.20894 0.90387 0.95592 0.99776 1.20528 0.96959 1.10001 0.93614 1.19674 0.83018 0.95013 0.95112 1.83518 1.20004 1.83492 1.28274 1.20686 0.94511 1.51399 0.80854 0.90290 1.25295 0.98852 0.95726 0.99100 1.69728 1.18670 1.50019 1.18004 0.85206 0.77361 0.79251 0.78828 1.19078 1.19186 1.18702 1.21206 0.94516 1.10821 0.98970 1.20849 0.93288 0.97140 0.97031 1.22188 0.86366 0.96856 1.00759 0.92618 0.92936 0.92603 0.92079 0.91616 0.91463 0.92315 0.92781 0.92839 0.92587 0.90815 0.92676 0.91434 0.92011 0.95929 0.92191 0.94226 0.88529 0.83027 0.85404 0.90586 0.87684 0.85887 0.95417 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.84 16 2 C -0.13 -1.44 5.23 30.59 0.16 -1.28 16 3 C -0.10 -1.27 4.27 30.59 0.13 -1.14 16 4 C -0.05 -0.80 0.54 -52.13 -0.03 -0.83 16 5 C -0.13 -2.07 7.68 71.98 0.55 -1.52 16 6 C -0.11 -1.79 4.36 30.68 0.13 -1.66 16 7 C -0.12 -2.50 5.74 30.65 0.18 -2.33 16 8 C 0.06 1.38 4.57 86.33 0.39 1.77 16 9 N -0.53 -11.62 4.08 -900.92 -3.68 -15.30 16 10 C 0.11 2.55 5.43 85.56 0.46 3.02 16 11 C -0.15 -4.38 4.13 -19.83 -0.08 -4.46 16 12 C -0.05 -1.48 9.69 22.25 0.22 -1.26 16 13 C -0.19 -7.36 9.99 22.39 0.22 -7.14 16 14 C 0.12 5.71 6.65 22.58 0.15 5.86 16 15 O -0.25 -13.49 8.59 -22.78 -0.20 -13.68 16 16 C -0.40 -23.74 9.95 67.92 0.68 -23.07 16 17 H 0.08 4.95 5.44 -2.91 -0.02 4.93 16 18 C 0.01 0.50 5.49 84.83 0.47 0.96 16 19 N -0.92 -55.67 13.96 21.61 0.30 -55.36 16 20 Si 0.97 45.91 28.62 68.60 1.96 47.87 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.24 -10.48 9.17 22.39 0.21 -10.27 16 25 C -0.06 -2.25 7.78 22.25 0.17 -2.08 16 26 C 0.07 1.16 4.15 86.32 0.36 1.51 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.06 0.74 6.49 -2.39 -0.02 0.72 16 31 H 0.07 0.76 6.43 -2.39 -0.02 0.75 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 1.08 6.01 -2.39 -0.01 1.06 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.81 6.44 -2.39 -0.02 0.79 16 37 H 0.07 1.12 6.58 -2.39 -0.02 1.11 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.52 6.58 -2.39 -0.02 1.50 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.06 1.85 5.64 -2.39 -0.01 1.84 16 43 H 0.04 0.87 8.02 -2.39 -0.02 0.85 16 44 H 0.10 1.86 8.08 -2.39 -0.02 1.84 16 45 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 46 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 47 H 0.28 15.72 8.31 -92.71 -0.77 14.94 16 48 H 0.11 5.18 5.64 -2.91 -0.02 5.16 16 49 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 50 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 Total: -1.00 -64.00 384.69 4.36 -59.63 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.89 Total: 21.61 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 5.08 Total: -44.76 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -3.38 Total: -70.67 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.20 Total: -13.68 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.96 Total: 47.87 kcal Total: -64.00 4.36 -59.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743872292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.728 kcal (2) G-P(sol) polarization free energy of solvation -63.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds