Wall clock time and date at job start Tue Mar 31 2020 12:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46933 * 2 1 4 4 C 1.53009 * 109.46763 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46919 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47267 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47267 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47005 * 180.02562 * 7 6 5 9 9 O 1.21290 * 120.00067 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00181 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00556 * 180.02562 * 10 8 7 12 12 H 1.09009 * 109.46624 * 324.99750 * 11 10 8 13 13 C 1.52996 * 109.47466 * 205.00158 * 11 10 8 14 14 C 1.50702 * 109.47159 * 64.99479 * 13 11 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.50700 * 109.47471 * 84.99708 * 11 10 8 23 23 C 1.38233 * 119.99377 * 39.72808 * 22 11 10 24 24 C 1.38237 * 119.99600 * 179.78842 * 23 22 11 25 25 C 1.38241 * 119.99990 * 0.44354 * 24 23 22 26 26 C 1.38237 * 119.99716 * 359.81238 * 25 24 23 27 27 C 1.38228 * 120.00326 * 220.00479 * 22 11 10 28 28 H 1.09001 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47071 * 300.00095 * 1 2 3 30 30 H 1.08995 * 109.47235 * 60.00155 * 1 2 3 31 31 H 1.09001 * 109.46805 * 239.99431 * 2 1 3 32 32 H 1.09005 * 109.46749 * 119.99623 * 2 1 3 33 33 H 1.08992 * 109.47769 * 59.99903 * 3 2 1 34 34 H 1.09005 * 109.47096 * 299.99411 * 3 2 1 35 35 H 1.09003 * 109.47071 * 60.00009 * 4 3 2 36 36 H 1.08995 * 109.47405 * 299.99845 * 4 3 2 37 37 H 1.09003 * 109.46827 * 60.00367 * 5 4 3 38 38 H 1.08995 * 109.47370 * 300.00374 * 5 4 3 39 39 H 1.09003 * 109.46697 * 60.00533 * 6 5 4 40 40 H 1.09000 * 109.47045 * 300.00834 * 6 5 4 41 41 H 1.09003 * 109.46827 * 60.00613 * 7 6 5 42 42 H 1.08995 * 109.47370 * 300.00619 * 7 6 5 43 43 H 0.97002 * 120.00072 * 359.97438 * 10 8 7 44 44 H 1.09004 * 109.47066 * 304.99682 * 13 11 10 45 45 H 1.08994 * 109.47405 * 184.99512 * 13 11 10 46 46 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 47 47 H 1.07995 * 120.00514 * 359.97438 * 23 22 11 48 48 H 1.08001 * 120.00058 * 180.28006 * 24 23 22 49 49 H 1.07995 * 120.00194 * 179.83256 * 25 24 23 50 50 H 1.08001 * 119.99824 * 180.02562 * 26 25 24 51 51 H 1.08005 * 119.99906 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8850 0.0013 7 6 6.1200 4.3275 0.0013 8 6 7.6270 4.3274 0.0019 9 8 8.2334 3.2770 0.0019 10 7 8.3009 5.4946 0.0026 11 6 9.7659 5.4946 0.0026 12 1 10.1292 4.6525 0.5917 13 6 10.2759 6.8016 0.6129 14 6 9.8771 6.8673 2.0648 15 1 9.3163 6.0576 2.5080 16 6 10.2335 7.9583 2.8289 17 7 10.9166 8.9441 2.2893 18 14 9.7458 8.0362 4.6304 19 1 10.8129 7.4200 5.4592 20 1 9.5630 9.4539 5.0329 21 1 8.4739 7.2966 4.8314 22 6 10.2684 5.3715 -1.4128 23 6 9.6307 6.0507 -2.4340 24 6 10.0942 5.9412 -3.7318 25 6 11.1899 5.1453 -4.0096 26 6 11.8242 4.4620 -2.9890 27 6 11.3633 4.5749 -1.6907 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9337 0.9284 -0.8891 36 1 3.9330 0.9288 0.8908 37 1 3.7163 3.3992 0.8896 38 1 3.7171 3.3983 -0.8904 39 1 5.9741 2.3705 -0.8881 40 1 5.9726 2.3717 0.8919 41 1 5.7560 4.8415 0.8909 42 1 5.7574 4.8411 -0.8890 43 1 7.8159 6.3347 0.0022 44 1 9.8413 7.6462 0.0782 45 1 11.3621 6.8407 0.5325 46 1 11.1671 9.7118 2.8268 47 1 8.7722 6.6692 -2.2177 48 1 9.5988 6.4754 -4.5290 49 1 11.5504 5.0577 -5.0238 50 1 12.6805 3.8405 -3.2060 51 1 11.8591 4.0411 -0.8934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749046203.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:19 Heat of formation + Delta-G solvation = -67.218765 kcal Electronic energy + Delta-G solvation = -25810.937125 eV Core-core repulsion = 22286.935675 eV Total energy + Delta-G solvation = -3524.001450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.63036 -38.45549 -36.80348 -35.23420 -34.15929 -32.72677 -31.41897 -30.57453 -30.35710 -28.79624 -26.90235 -24.88747 -23.15821 -22.27765 -21.93848 -21.22577 -21.03225 -20.00334 -19.58628 -16.96095 -16.36522 -16.26106 -16.15575 -15.49529 -15.31190 -14.79841 -14.53695 -14.22603 -14.19196 -14.10454 -13.54001 -13.25005 -13.11276 -12.98263 -12.66074 -12.50834 -12.35217 -12.10740 -12.10419 -11.93963 -11.54754 -11.34522 -11.18675 -11.12425 -10.98802 -10.93332 -10.75426 -10.72851 -10.60502 -10.55561 -10.51503 -10.44704 -9.77324 -9.34896 -9.22146 -8.53577 -8.45801 -8.37022 -8.16646 -6.09487 -4.12839 1.79392 1.81367 3.20113 3.26977 3.33970 3.36836 3.79351 4.25195 4.39393 4.51375 4.67038 4.82049 4.95092 5.01845 5.09735 5.22324 5.26757 5.27363 5.28447 5.31360 5.38332 5.46408 5.48289 5.52592 5.56805 5.66281 5.72175 5.76149 5.78549 5.90092 5.91647 5.93138 5.95604 5.98143 6.06123 6.17190 6.20914 6.32455 6.37499 6.43186 6.45821 6.60052 6.85678 6.86478 6.96509 7.13393 7.41766 7.49750 7.63950 7.87313 8.18916 8.26615 8.84286 8.93048 9.52065 11.01024 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008484 B = 0.003034 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3299.526134 B = 9225.678737 C =11976.007491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.102 4.102 7 C -0.142 4.142 8 C 0.508 3.492 9 O -0.553 6.553 10 N -0.702 5.702 11 C 0.183 3.817 12 H 0.085 0.915 13 C 0.024 3.976 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.070 4.070 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.109 4.109 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.400 0.600 44 H 0.024 0.976 45 H 0.033 0.967 46 H 0.262 0.738 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.116 0.884 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.514 -10.668 -9.180 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.140 4.140 7 C -0.182 4.182 8 C 0.294 3.706 9 O -0.432 6.432 10 N -0.351 5.351 11 C 0.079 3.921 12 H 0.103 0.897 13 C -0.014 4.014 14 C -0.557 4.557 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.071 4.071 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.235 0.765 44 H 0.042 0.958 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.134 0.866 48 H 0.132 0.868 49 H 0.131 0.869 50 H 0.134 0.866 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.996 -11.231 -9.122 19.448 hybrid contribution -0.345 0.703 1.009 1.277 sum -13.341 -10.528 -8.113 18.832 Atomic orbital electron populations 1.21784 0.96093 1.01433 1.01744 1.21551 0.95662 0.97207 1.01992 1.21636 0.95708 0.96507 1.01950 1.21604 0.94939 0.97058 1.02203 1.21624 0.95528 0.96672 1.01923 1.21313 0.94150 0.95109 1.03417 1.21680 0.92864 0.99592 1.04033 1.20614 0.89899 0.84064 0.75983 1.90649 1.70547 1.31462 1.50495 1.46010 1.07511 1.08150 1.73458 1.20221 0.78841 1.02852 0.90186 0.89655 1.19388 0.97316 0.89157 0.95507 1.21134 1.35443 1.04428 0.94745 0.92415 1.24999 0.95071 0.95697 0.98461 1.69963 1.38395 1.08422 1.36288 0.86588 0.79002 0.77109 0.85278 1.20646 1.21258 1.19877 1.20569 0.95050 0.94881 0.96625 1.20905 0.99993 0.99359 0.92408 1.21043 0.97277 0.99498 0.96525 1.20992 0.97023 0.98708 0.98664 1.21041 0.99904 1.00056 0.93091 1.21020 0.96725 0.98450 0.96523 0.92945 0.92807 0.92828 0.92117 0.92084 0.92087 0.92134 0.92031 0.91957 0.92003 0.92115 0.91467 0.91322 0.89081 0.89474 0.76531 0.95762 0.94846 0.92881 0.86579 0.86754 0.86856 0.86624 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.94 5.21 -26.73 -0.14 -1.08 16 4 C -0.12 -1.08 5.22 -26.73 -0.14 -1.22 16 5 C -0.12 -1.15 5.21 -26.73 -0.14 -1.29 16 6 C -0.10 -1.25 4.50 -26.73 -0.12 -1.37 16 7 C -0.14 -1.81 5.70 -27.88 -0.16 -1.97 16 8 C 0.51 8.89 7.79 -10.99 -0.09 8.80 16 9 O -0.55 -11.62 15.65 5.55 0.09 -11.53 16 10 N -0.70 -12.62 4.02 -54.93 -0.22 -12.84 16 11 C 0.18 3.77 2.12 -69.08 -0.15 3.62 16 12 H 0.09 1.93 7.44 -51.92 -0.39 1.55 16 13 C 0.02 0.57 4.50 -27.88 -0.13 0.44 16 14 C -0.52 -13.75 8.84 -34.44 -0.30 -14.06 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 18 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 22 C -0.07 -1.32 4.91 -104.63 -0.51 -1.83 16 23 C -0.11 -1.84 9.33 -39.58 -0.37 -2.21 16 24 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 25 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 26 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 27 C -0.11 -1.93 9.67 -39.59 -0.38 -2.31 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.40 6.55 8.60 -40.82 -0.35 6.20 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.12 1.83 7.71 -52.49 -0.40 1.42 16 48 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 49 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 50 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 51 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16 LS Contribution 418.59 15.07 6.31 6.31 Total: -1.00 -30.74 418.59 -11.37 -42.11 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -9.56 Total: 6.37 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -3.71 Total: -21.57 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.52 Total: -37.69 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -30.74 -11.37 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749046203.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.105 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds