Wall clock time and date at job start Tue Mar 31 2020 11:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47033 * 2 1 4 4 C 1.53001 * 109.47315 * 239.99854 * 2 1 3 5 5 C 1.52992 * 109.47048 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47545 * 59.99591 * 5 4 2 7 7 C 1.53001 * 109.47281 * 300.00266 * 6 5 4 8 8 H 1.08997 * 109.47016 * 299.99889 * 7 6 5 9 9 C 1.53002 * 109.46938 * 179.97438 * 7 6 5 10 10 N 1.46905 * 109.47169 * 65.00254 * 9 7 6 11 11 C 1.46896 * 111.00138 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47096 * 179.97438 * 11 10 9 13 13 C 1.38303 * 119.92906 * 90.00006 * 12 11 10 14 14 C 1.38108 * 120.06534 * 179.97438 * 13 12 11 15 15 C 1.38877 * 119.93181 * 359.97438 * 14 13 12 16 16 O 1.35747 * 120.06827 * 179.97438 * 15 14 13 17 17 C 1.34822 * 117.00161 * 5.53068 * 16 15 14 18 18 H 1.08004 * 120.00205 * 354.94858 * 17 16 15 19 19 C 1.38654 * 120.00200 * 174.94014 * 17 16 15 20 20 N 1.31553 * 119.99993 * 359.72918 * 19 17 16 21 21 Si 1.86806 * 120.00148 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46984 * 269.72940 * 21 19 17 23 23 H 1.48499 * 109.46862 * 29.73098 * 21 19 17 24 24 H 1.48501 * 109.46908 * 149.72900 * 21 19 17 25 25 C 1.38884 * 119.86025 * 0.25082 * 15 14 13 26 26 C 1.38097 * 119.93210 * 359.49481 * 25 15 14 27 27 C 1.53001 * 109.46754 * 119.99732 * 2 1 3 28 28 H 1.08996 * 109.47214 * 300.00053 * 1 2 3 29 29 H 1.08998 * 109.46653 * 60.00235 * 1 2 3 30 30 H 1.08997 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47380 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47470 * 299.99902 * 3 2 1 33 33 H 1.09004 * 109.47284 * 59.99697 * 3 2 1 34 34 H 1.09003 * 109.46987 * 300.00231 * 4 2 1 35 35 H 1.08994 * 109.46772 * 59.99603 * 4 2 1 36 36 H 1.08994 * 109.47456 * 180.02562 * 5 4 2 37 37 H 1.09003 * 109.47193 * 299.99832 * 5 4 2 38 38 H 1.09000 * 109.47289 * 179.97438 * 6 5 4 39 39 H 1.09003 * 109.46678 * 59.99926 * 6 5 4 40 40 H 1.08998 * 109.47631 * 304.99955 * 9 7 6 41 41 H 1.09000 * 109.47062 * 184.99840 * 9 7 6 42 42 H 1.00905 * 111.00001 * 56.03888 * 10 9 7 43 43 H 1.08991 * 109.47140 * 59.99807 * 11 10 9 44 44 H 1.09003 * 109.47160 * 299.99648 * 11 10 9 45 45 H 1.07994 * 119.96977 * 359.97438 * 13 12 11 46 46 H 1.07996 * 120.03323 * 179.97438 * 14 13 12 47 47 H 0.97007 * 120.00140 * 0.27194 * 20 19 17 48 48 H 1.07997 * 120.03119 * 179.72764 * 25 15 14 49 49 H 1.08003 * 119.96612 * 180.23034 * 26 25 15 50 50 H 1.08997 * 109.47412 * 60.00288 * 27 2 1 51 51 H 1.08996 * 109.47436 * 300.00079 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0796 -1.4432 0.0004 7 6 3.5695 -0.7220 1.2496 8 1 3.9331 0.3056 1.2498 9 6 4.0786 -1.4439 2.4989 10 7 5.5427 -1.3411 2.5614 11 6 6.0681 -2.0240 3.7512 12 6 7.5695 -1.8980 3.7807 13 6 8.1594 -0.8234 4.4210 14 6 9.5351 -0.7055 4.4502 15 6 10.3263 -1.6676 3.8362 16 8 11.6787 -1.5541 3.8628 17 6 12.1943 -0.5484 4.5979 18 1 11.5377 0.1708 5.0650 19 6 13.5675 -0.4373 4.7544 20 7 14.3671 -1.3164 4.1901 21 14 14.2818 0.9567 5.7723 22 1 14.5428 2.1265 4.8956 23 1 13.3166 1.3393 6.8340 24 1 15.5539 0.5123 6.3966 25 6 9.7307 -2.7430 3.1900 26 6 8.3547 -2.8582 3.1688 27 6 2.0400 -0.7212 1.2493 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1391 36 1 3.9335 -1.2352 -2.1389 37 1 3.9337 0.3058 -1.2486 38 1 5.1696 -1.4440 0.0004 39 1 3.7159 -2.4708 0.0002 40 1 3.7896 -2.4939 2.4550 41 1 3.6439 -0.9843 3.3866 42 1 5.8389 -0.3768 2.5380 43 1 5.7929 -3.0780 3.7163 44 1 5.6472 -1.5680 4.6473 45 1 7.5436 -0.0757 4.8987 46 1 9.9951 0.1341 4.9500 47 1 13.9962 -2.0401 3.6612 48 1 10.3432 -3.4905 2.7079 49 1 7.8911 -3.6962 2.6696 50 1 1.6767 -1.7489 1.2494 51 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752065929.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:49 Heat of formation + Delta-G solvation = -45.219886 kcal Electronic energy + Delta-G solvation = -26013.874654 eV Core-core repulsion = 22490.827147 eV Total energy + Delta-G solvation = -3523.047507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.97304 -39.13904 -37.21692 -35.76487 -33.31944 -32.31137 -31.61878 -30.21381 -29.27996 -27.64038 -26.55609 -25.75123 -24.78003 -23.29558 -22.13530 -21.91433 -20.73438 -20.32051 -18.61629 -18.36097 -16.92929 -15.90517 -15.39217 -15.35252 -14.92407 -14.86197 -14.71105 -14.28368 -14.05303 -13.98654 -13.71984 -13.65957 -13.49592 -13.12341 -13.02551 -12.61330 -12.48438 -12.38658 -12.15315 -11.92700 -11.77835 -11.62130 -11.44929 -11.19963 -11.15057 -11.05978 -10.97359 -10.76501 -10.69470 -10.33426 -10.31896 -10.28394 -10.14547 -10.06377 -9.39865 -8.76877 -8.33914 -8.21154 -7.24368 -6.76898 -4.05967 2.17318 2.24155 3.23282 3.29483 3.42986 4.11399 4.13627 4.39160 4.42929 4.50048 4.69339 4.77973 4.96600 5.07467 5.08873 5.15117 5.18295 5.19557 5.26287 5.32229 5.34470 5.37629 5.41038 5.43721 5.50934 5.54999 5.63735 5.64347 5.70105 5.72968 5.78218 5.79565 5.80188 5.86370 5.88445 6.00765 6.06977 6.11981 6.16074 6.19227 6.33266 6.38144 6.40159 6.64702 6.83903 7.02194 7.13147 7.26805 7.31968 7.47746 7.57416 7.74539 8.40516 8.92419 9.61722 10.67193 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.002034 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.951005 B =13761.825032 C =13951.443156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.124 4.124 6 C -0.105 4.105 7 C -0.085 4.085 8 H 0.071 0.929 9 C 0.062 3.938 10 N -0.683 5.683 11 C 0.118 3.882 12 C -0.181 4.181 13 C -0.066 4.066 14 C -0.230 4.230 15 C 0.158 3.842 16 O -0.203 6.203 17 C -0.472 4.472 18 H 0.084 0.916 19 C 0.009 3.991 20 N -0.882 5.882 21 Si 1.099 2.901 22 H -0.281 1.281 23 H -0.283 1.283 24 H -0.275 1.275 25 C -0.197 4.197 26 C -0.052 4.052 27 C -0.101 4.101 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.340 0.660 43 H 0.069 0.931 44 H 0.026 0.974 45 H 0.103 0.897 46 H 0.127 0.873 47 H 0.282 0.718 48 H 0.114 0.886 49 H 0.112 0.888 50 H 0.061 0.939 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.081 2.263 -6.726 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.202 4.202 4 C -0.145 4.145 5 C -0.161 4.161 6 C -0.142 4.142 7 C -0.104 4.104 8 H 0.089 0.911 9 C -0.067 4.067 10 N -0.314 5.314 11 C -0.010 4.010 12 C -0.182 4.182 13 C -0.085 4.085 14 C -0.250 4.250 15 C 0.105 3.895 16 O -0.107 6.107 17 C -0.548 4.548 18 H 0.101 0.899 19 C -0.196 4.196 20 N -0.514 5.514 21 Si 0.923 3.077 22 H -0.207 1.207 23 H -0.209 1.209 24 H -0.200 1.200 25 C -0.216 4.216 26 C -0.070 4.070 27 C -0.139 4.139 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.158 0.842 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.121 0.879 46 H 0.144 0.856 47 H 0.092 0.908 48 H 0.132 0.868 49 H 0.130 0.870 50 H 0.080 0.920 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.318 2.237 -6.685 25.319 hybrid contribution -1.850 0.061 0.214 1.864 sum -26.168 2.298 -6.471 27.054 Atomic orbital electron populations 1.21869 0.94894 1.01569 1.01539 1.20513 0.94875 0.95589 0.95436 1.21978 1.01745 0.95218 1.01304 1.21589 0.95983 1.00101 0.96781 1.21617 0.95187 1.01039 0.98298 1.21464 1.01633 0.98419 0.92724 1.21180 0.94521 0.99773 0.94879 0.91097 1.22015 0.88264 1.00464 0.96000 1.60558 1.08694 1.20539 1.41576 1.20604 0.91645 0.98734 0.90031 1.19144 0.93665 0.98554 1.06879 1.20606 0.94052 0.96300 0.97530 1.21130 0.93524 1.02299 1.08024 1.19253 0.84205 0.92958 0.93089 1.83663 1.15564 1.49409 1.62086 1.22228 0.93887 1.06364 1.32283 0.89890 1.26538 0.90755 1.03091 0.99244 1.70541 1.38017 1.13686 1.29135 0.83052 0.76168 0.73235 0.75233 1.20701 1.20862 1.20049 1.20208 0.94402 0.99363 1.07667 1.20455 0.92195 0.97588 0.96798 1.21593 0.95111 1.00311 0.96929 0.92810 0.92819 0.92802 0.91793 0.92995 0.92979 0.92205 0.92431 0.92298 0.91866 0.90535 0.92558 0.91339 0.95822 0.84195 0.91241 0.95579 0.87871 0.85565 0.90766 0.86750 0.86999 0.92029 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.47 37.16 0.31 -0.59 16 2 C -0.06 -0.46 0.77 -154.51 -0.12 -0.58 16 3 C -0.15 -1.06 7.78 37.16 0.29 -0.77 16 4 C -0.11 -0.79 4.73 -26.73 -0.13 -0.92 16 5 C -0.12 -1.03 5.65 -26.74 -0.15 -1.18 16 6 C -0.10 -0.98 5.09 -26.73 -0.14 -1.12 16 7 C -0.08 -0.74 2.06 -90.64 -0.19 -0.93 16 8 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 9 C 0.06 0.61 5.07 -3.82 -0.02 0.59 16 10 N -0.68 -8.29 5.95 -115.06 -0.68 -8.97 16 11 C 0.12 1.58 5.81 -4.98 -0.03 1.55 16 12 C -0.18 -3.07 5.40 -104.57 -0.56 -3.63 16 13 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 14 C -0.23 -5.08 9.17 -39.39 -0.36 -5.44 16 15 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 16 O -0.20 -5.78 9.16 0.08 0.00 -5.78 16 17 C -0.47 -13.38 9.49 30.89 0.29 -13.08 16 18 H 0.08 2.22 5.20 -52.48 -0.27 1.94 16 19 C 0.01 0.25 5.49 -17.52 -0.10 0.16 16 20 N -0.88 -26.50 13.70 55.48 0.76 -25.74 16 21 Si 1.10 23.87 29.92 -169.99 -5.09 18.78 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 25 C -0.20 -4.19 9.99 -39.39 -0.39 -4.59 16 26 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 27 C -0.10 -0.78 4.01 -26.75 -0.11 -0.89 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.50 4.81 -51.93 -0.25 0.25 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 38 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.34 4.20 8.72 -39.29 -0.34 3.86 16 43 H 0.07 0.89 8.08 -51.93 -0.42 0.48 16 44 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 45 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 46 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 47 H 0.28 8.68 7.97 -40.82 -0.33 8.36 16 48 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 49 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -29.60 394.19 -10.45 -40.05 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.96 Total: 6.45 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -2.42 Total: -30.72 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.08 Total: -34.71 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: 0.00 Total: -5.78 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.09 Total: 18.78 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.60 -10.45 -40.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752065929.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.175 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds