Wall clock time and date at job start Tue Mar 31 2020 11:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47033 * 2 1 4 4 C 1.53001 * 109.47315 * 239.99854 * 2 1 3 5 5 C 1.52992 * 109.47048 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47545 * 59.99591 * 5 4 2 7 7 C 1.53001 * 109.47281 * 300.00266 * 6 5 4 8 8 H 1.08997 * 109.47016 * 299.99889 * 7 6 5 9 9 C 1.53002 * 109.46938 * 179.97438 * 7 6 5 10 10 N 1.46905 * 109.47169 * 65.00254 * 9 7 6 11 11 C 1.46896 * 111.00138 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47096 * 179.97438 * 11 10 9 13 13 C 1.38303 * 119.92906 * 90.00006 * 12 11 10 14 14 C 1.38108 * 120.06534 * 179.97438 * 13 12 11 15 15 C 1.38877 * 119.93181 * 359.97438 * 14 13 12 16 16 O 1.35747 * 120.06827 * 179.97438 * 15 14 13 17 17 C 1.34822 * 117.00161 * 5.53068 * 16 15 14 18 18 H 1.08004 * 120.00205 * 354.94858 * 17 16 15 19 19 C 1.38654 * 120.00200 * 174.94014 * 17 16 15 20 20 N 1.31553 * 119.99993 * 359.72918 * 19 17 16 21 21 Si 1.86806 * 120.00148 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46984 * 269.72940 * 21 19 17 23 23 H 1.48499 * 109.46862 * 29.73098 * 21 19 17 24 24 H 1.48501 * 109.46908 * 149.72900 * 21 19 17 25 25 C 1.38884 * 119.86025 * 0.25082 * 15 14 13 26 26 C 1.38097 * 119.93210 * 359.49481 * 25 15 14 27 27 C 1.53001 * 109.46754 * 119.99732 * 2 1 3 28 28 H 1.08996 * 109.47214 * 300.00053 * 1 2 3 29 29 H 1.08998 * 109.46653 * 60.00235 * 1 2 3 30 30 H 1.08997 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47380 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47470 * 299.99902 * 3 2 1 33 33 H 1.09004 * 109.47284 * 59.99697 * 3 2 1 34 34 H 1.09003 * 109.46987 * 300.00231 * 4 2 1 35 35 H 1.08994 * 109.46772 * 59.99603 * 4 2 1 36 36 H 1.08994 * 109.47456 * 180.02562 * 5 4 2 37 37 H 1.09003 * 109.47193 * 299.99832 * 5 4 2 38 38 H 1.09000 * 109.47289 * 179.97438 * 6 5 4 39 39 H 1.09003 * 109.46678 * 59.99926 * 6 5 4 40 40 H 1.08998 * 109.47631 * 304.99955 * 9 7 6 41 41 H 1.09000 * 109.47062 * 184.99840 * 9 7 6 42 42 H 1.00905 * 111.00001 * 56.03888 * 10 9 7 43 43 H 1.08991 * 109.47140 * 59.99807 * 11 10 9 44 44 H 1.09003 * 109.47160 * 299.99648 * 11 10 9 45 45 H 1.07994 * 119.96977 * 359.97438 * 13 12 11 46 46 H 1.07996 * 120.03323 * 179.97438 * 14 13 12 47 47 H 0.97007 * 120.00140 * 0.27194 * 20 19 17 48 48 H 1.07997 * 120.03119 * 179.72764 * 25 15 14 49 49 H 1.08003 * 119.96612 * 180.23034 * 26 25 15 50 50 H 1.08997 * 109.47412 * 60.00288 * 27 2 1 51 51 H 1.08996 * 109.47436 * 300.00079 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0796 -1.4432 0.0004 7 6 3.5695 -0.7220 1.2496 8 1 3.9331 0.3056 1.2498 9 6 4.0786 -1.4439 2.4989 10 7 5.5427 -1.3411 2.5614 11 6 6.0681 -2.0240 3.7512 12 6 7.5695 -1.8980 3.7807 13 6 8.1594 -0.8234 4.4210 14 6 9.5351 -0.7055 4.4502 15 6 10.3263 -1.6676 3.8362 16 8 11.6787 -1.5541 3.8628 17 6 12.1943 -0.5484 4.5979 18 1 11.5377 0.1708 5.0650 19 6 13.5675 -0.4373 4.7544 20 7 14.3671 -1.3164 4.1901 21 14 14.2818 0.9567 5.7723 22 1 14.5428 2.1265 4.8956 23 1 13.3166 1.3393 6.8340 24 1 15.5539 0.5123 6.3966 25 6 9.7307 -2.7430 3.1900 26 6 8.3547 -2.8582 3.1688 27 6 2.0400 -0.7212 1.2493 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1391 36 1 3.9335 -1.2352 -2.1389 37 1 3.9337 0.3058 -1.2486 38 1 5.1696 -1.4440 0.0004 39 1 3.7159 -2.4708 0.0002 40 1 3.7896 -2.4939 2.4550 41 1 3.6439 -0.9843 3.3866 42 1 5.8389 -0.3768 2.5380 43 1 5.7929 -3.0780 3.7163 44 1 5.6472 -1.5680 4.6473 45 1 7.5436 -0.0757 4.8987 46 1 9.9951 0.1341 4.9500 47 1 13.9962 -2.0401 3.6612 48 1 10.3432 -3.4905 2.7079 49 1 7.8911 -3.6962 2.6696 50 1 1.6767 -1.7489 1.2494 51 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752065929.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:48 Heat of formation + Delta-G solvation = -60.583126 kcal Electronic energy + Delta-G solvation = -26014.540854 eV Core-core repulsion = 22490.827147 eV Total energy + Delta-G solvation = -3523.713707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.92663 -40.58577 -38.78839 -36.87267 -34.47267 -33.92839 -32.52362 -31.84994 -30.60273 -28.18069 -27.32937 -27.09888 -26.36313 -24.39750 -23.60449 -22.80924 -22.09196 -21.25234 -20.24143 -19.22371 -18.74572 -17.13931 -16.75508 -16.27372 -15.96297 -15.81256 -15.73053 -15.62158 -15.52159 -15.29415 -15.07824 -14.80647 -14.67962 -14.35906 -14.02772 -13.81648 -13.37194 -13.18747 -12.94752 -12.91870 -12.71571 -12.61116 -12.57741 -12.33631 -12.24736 -12.22070 -12.07407 -11.99498 -11.92996 -11.76621 -11.63095 -11.27284 -10.99831 -10.81583 -10.77274 -10.73019 -9.84478 -9.30389 -8.98555 -8.93486 -6.24815 0.53486 0.61254 1.47855 1.61374 1.76851 2.35190 2.77245 3.08451 3.32916 3.44815 3.75991 3.79833 3.90678 3.98807 4.01852 4.12610 4.17852 4.30827 4.37168 4.47890 4.52018 4.54105 4.55260 4.64625 4.68764 4.73460 4.76035 4.80082 4.83857 4.87727 4.92948 4.97582 5.01202 5.06068 5.12883 5.15630 5.22613 5.23542 5.24084 5.24485 5.35984 5.44493 5.51506 5.52224 5.56874 5.59748 5.70457 5.72619 5.76976 6.04292 6.16660 6.29998 6.48944 6.86201 7.62778 8.50085 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.002034 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.951005 B =13761.825032 C =13951.443156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.144 4.144 4 C -0.104 4.104 5 C -0.123 4.123 6 C -0.101 4.101 7 C -0.079 4.079 8 H 0.066 0.934 9 C 0.066 3.934 10 N -0.690 5.690 11 C 0.122 3.878 12 C -0.152 4.152 13 C -0.063 4.063 14 C -0.241 4.241 15 C 0.115 3.885 16 O -0.254 6.254 17 C -0.486 4.486 18 H 0.091 0.909 19 C -0.047 4.047 20 N -0.918 5.918 21 Si 1.148 2.852 22 H -0.264 1.264 23 H -0.259 1.259 24 H -0.273 1.273 25 C -0.206 4.206 26 C -0.047 4.047 27 C -0.097 4.097 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.033 0.967 42 H 0.340 0.660 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.139 0.861 46 H 0.116 0.884 47 H 0.260 0.740 48 H 0.112 0.888 49 H 0.145 0.855 50 H 0.063 0.937 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.940 3.033 -6.235 30.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.160 4.160 6 C -0.139 4.139 7 C -0.098 4.098 8 H 0.085 0.915 9 C -0.063 4.063 10 N -0.321 5.321 11 C -0.006 4.006 12 C -0.153 4.153 13 C -0.081 4.081 14 C -0.260 4.260 15 C 0.065 3.935 16 O -0.162 6.162 17 C -0.562 4.562 18 H 0.108 0.892 19 C -0.243 4.243 20 N -0.553 5.553 21 Si 0.964 3.036 22 H -0.189 1.189 23 H -0.183 1.183 24 H -0.198 1.198 25 C -0.225 4.225 26 C -0.066 4.066 27 C -0.135 4.135 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.157 0.843 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.156 0.844 46 H 0.134 0.866 47 H 0.068 0.932 48 H 0.131 0.869 49 H 0.163 0.837 50 H 0.082 0.918 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -28.259 2.996 -6.209 29.088 hybrid contribution -1.062 -0.280 -0.035 1.099 sum -29.321 2.716 -6.245 30.102 Atomic orbital electron populations 1.21846 0.94096 1.01862 1.01873 1.20512 0.95487 0.95338 0.95008 1.21965 1.01201 0.95400 1.01584 1.21565 0.95075 1.00299 0.97227 1.21595 0.96005 1.00646 0.97790 1.21396 1.00259 0.98588 0.93613 1.21117 0.95351 0.99218 0.94076 0.91527 1.22026 0.86637 1.00853 0.96741 1.60503 1.10343 1.20517 1.40761 1.20599 0.88534 1.00093 0.91379 1.19670 0.96033 0.96476 1.03115 1.20963 0.92605 0.97426 0.97115 1.21241 0.95196 1.01555 1.07990 1.19834 0.83418 0.95042 0.95215 1.83642 1.17758 1.50506 1.64259 1.22601 0.94521 1.06729 1.32377 0.89171 1.28413 0.91389 1.04822 0.99632 1.70683 1.38080 1.14805 1.31702 0.82538 0.75927 0.70618 0.74541 1.18879 1.18339 1.19795 1.20479 0.96057 0.98655 1.07336 1.20856 0.90734 0.98761 0.96240 1.21554 0.94025 1.00573 0.97358 0.92517 0.92500 0.92535 0.92591 0.92714 0.92750 0.92106 0.91981 0.92455 0.92204 0.92604 0.92713 0.91082 0.94922 0.84254 0.89875 0.93894 0.84356 0.86640 0.93191 0.86948 0.83734 0.91832 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.47 71.98 0.61 -0.82 16 2 C -0.06 -0.76 0.77 -52.18 -0.04 -0.80 16 3 C -0.14 -1.80 7.78 71.98 0.56 -1.24 16 4 C -0.10 -1.33 4.73 30.59 0.14 -1.19 16 5 C -0.12 -1.87 5.65 30.59 0.17 -1.69 16 6 C -0.10 -1.71 5.09 30.59 0.16 -1.56 16 7 C -0.08 -1.18 2.06 -10.81 -0.02 -1.21 16 8 H 0.07 1.09 6.43 -2.39 -0.02 1.07 16 9 C 0.07 1.08 5.07 86.30 0.44 1.51 16 10 N -0.69 -14.26 5.95 -517.93 -3.08 -17.34 16 11 C 0.12 2.72 5.81 85.56 0.50 3.22 16 12 C -0.15 -4.64 5.40 -19.83 -0.11 -4.75 16 13 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 14 C -0.24 -10.64 9.17 22.39 0.21 -10.43 16 15 C 0.11 5.79 6.65 22.58 0.15 5.94 16 16 O -0.25 -15.38 9.16 -22.63 -0.21 -15.59 16 17 C -0.49 -28.91 9.49 67.92 0.64 -28.27 16 18 H 0.09 5.00 5.20 -2.91 -0.02 4.99 16 19 C -0.05 -2.72 5.49 84.83 0.47 -2.26 16 20 N -0.92 -58.25 13.70 21.61 0.30 -57.95 16 21 Si 1.15 48.75 29.92 68.60 2.05 50.80 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C -0.21 -8.86 9.99 22.39 0.22 -8.64 16 26 C -0.05 -1.61 9.69 22.25 0.22 -1.39 16 27 C -0.10 -1.22 4.01 30.58 0.12 -1.10 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.79 4.81 -2.39 -0.01 0.77 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.95 6.43 -2.39 -0.02 0.93 16 38 H 0.06 1.18 7.75 -2.39 -0.02 1.16 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.34 7.23 8.72 -89.69 -0.78 6.45 16 43 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 44 H 0.04 0.87 8.08 -2.39 -0.02 0.85 16 45 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 46 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 47 H 0.26 17.21 7.97 -92.70 -0.74 16.47 16 48 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 49 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 50 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -68.66 394.19 3.86 -64.80 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: 0.15 Total: 31.86 kcal Atomic # 6 Polarization: -61.23 SS G_CDS: 4.65 Total: -56.57 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -2.78 Total: -75.30 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.21 Total: -15.59 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.05 Total: 50.80 kcal Total: -68.66 3.86 -64.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752065929.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.216 kcal (2) G-P(sol) polarization free energy of solvation -68.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds