Wall clock time and date at job start Tue Mar 31 2020 12:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47247 * 2 1 4 4 C 1.52993 * 109.47413 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47413 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47203 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.47367 * 59.99815 * 6 5 4 8 8 C 1.53004 * 109.47047 * 299.99532 * 6 5 4 9 9 C 1.53006 * 109.47286 * 180.02562 * 6 5 4 10 10 N 1.46494 * 109.47115 * 179.97438 * 9 6 5 11 11 C 1.34781 * 119.99667 * 179.97438 * 10 9 6 12 12 O 1.21542 * 120.00415 * 359.97438 * 11 10 9 13 13 C 1.47886 * 119.99598 * 180.02562 * 11 10 9 14 14 C 1.39915 * 120.03143 * 359.97438 * 13 11 10 15 15 C 1.38325 * 120.36223 * 180.02562 * 14 13 11 16 16 C 1.37745 * 120.41285 * 0.02562 * 15 14 13 17 17 C 1.40745 * 120.04067 * 359.97438 * 16 15 14 18 18 C 1.41439 * 120.18018 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99853 * 24.38666 * 18 17 16 20 20 C 1.39937 * 120.00015 * 204.38540 * 18 17 16 21 21 N 1.30828 * 120.00202 * 17.84583 * 20 18 17 22 22 Si 1.86804 * 120.00094 * 197.84043 * 20 18 17 23 23 H 1.48505 * 109.46643 * 60.00420 * 22 20 18 24 24 H 1.48494 * 109.47065 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47088 * 300.00333 * 22 20 18 26 26 C 1.38995 * 120.02525 * 180.02562 * 13 11 10 27 27 H 1.09000 * 109.47280 * 299.99702 * 1 2 3 28 28 H 1.08995 * 109.47142 * 59.99908 * 1 2 3 29 29 H 1.08998 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47018 * 239.99820 * 2 1 3 31 31 H 1.08995 * 109.47142 * 120.00092 * 2 1 3 32 32 H 1.09002 * 109.47259 * 59.99967 * 3 2 1 33 33 H 1.09007 * 109.46874 * 300.00390 * 3 2 1 34 34 H 1.09002 * 109.46903 * 59.99788 * 4 3 2 35 35 H 1.08999 * 109.47507 * 300.00405 * 4 3 2 36 36 H 1.09002 * 109.47259 * 60.00006 * 5 4 3 37 37 H 1.09007 * 109.47352 * 299.99825 * 5 4 3 38 38 H 1.09003 * 109.47342 * 179.97438 * 7 6 5 39 39 H 1.08998 * 109.47040 * 300.00145 * 7 6 5 40 40 H 1.09007 * 109.47226 * 60.00580 * 7 6 5 41 41 H 1.09000 * 109.47388 * 300.00726 * 8 6 5 42 42 H 1.09000 * 109.46374 * 60.00383 * 8 6 5 43 43 H 1.08998 * 109.47128 * 179.97438 * 8 6 5 44 44 H 1.09000 * 109.46956 * 59.99392 * 9 6 5 45 45 H 1.09007 * 109.46572 * 299.99867 * 9 6 5 46 46 H 0.96999 * 120.00641 * 359.97438 * 10 9 6 47 47 H 1.08009 * 119.81570 * 359.97438 * 14 13 11 48 48 H 1.08010 * 119.79275 * 180.02562 * 15 14 13 49 49 H 1.08002 * 119.98213 * 179.97438 * 16 15 14 50 50 H 0.96991 * 120.00411 * 180.02562 * 21 20 18 51 51 H 1.08005 * 120.20307 * 359.70165 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 6 6.1200 2.1631 -1.2488 8 6 6.1200 2.1643 1.2497 9 6 6.1201 4.3274 0.0000 10 7 7.5850 4.3274 0.0006 11 6 8.2589 5.4946 0.0002 12 8 7.6512 6.5473 -0.0011 13 6 9.7377 5.4946 0.0003 14 6 10.4379 4.2832 0.0013 15 6 11.8211 4.2752 0.0019 16 6 12.5254 5.4590 0.0020 17 6 11.8384 6.6874 0.0010 18 6 12.5586 7.9048 0.0005 19 1 13.5668 7.9355 -0.3852 20 6 11.9646 9.0692 0.5000 21 7 10.9119 8.9872 1.2723 22 14 12.6750 10.7410 0.0639 23 1 12.6407 10.9243 -1.4094 24 1 11.8700 11.8058 0.7145 25 1 14.0791 10.8217 0.5403 26 6 10.4333 6.6980 0.0004 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 3.7163 3.3993 0.8895 37 1 3.7171 3.3983 -0.8905 38 1 7.2100 2.1635 -1.2490 39 1 5.7567 1.1355 -1.2483 40 1 5.7568 2.6766 -2.1391 41 1 5.7566 2.6785 2.1394 42 1 5.7566 1.1366 1.2500 43 1 7.2100 2.1639 1.2494 44 1 5.7566 4.8413 0.8899 45 1 5.7567 4.8412 -0.8901 46 1 8.0701 3.4874 0.0013 47 1 9.8953 3.3493 0.0024 48 1 12.3523 3.3347 0.0022 49 1 13.6053 5.4446 0.0029 50 1 10.4999 9.7943 1.6182 51 1 9.8971 7.6355 -0.0044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755414007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:22 Heat of formation + Delta-G solvation = -78.606365 kcal Electronic energy + Delta-G solvation = -26053.051569 eV Core-core repulsion = 22528.556315 eV Total energy + Delta-G solvation = -3524.495253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.09379 -39.46564 -38.62130 -36.49817 -35.63186 -34.60089 -32.17675 -31.35333 -31.20803 -28.18197 -27.97704 -27.27448 -26.83268 -24.21812 -22.91613 -22.65064 -21.78130 -21.24005 -19.84971 -19.27149 -17.95104 -17.18763 -16.73516 -16.66159 -16.42095 -16.33258 -15.61549 -15.37314 -15.29198 -14.98989 -14.63213 -14.58603 -14.29835 -14.25465 -14.12988 -13.76178 -13.51812 -13.31989 -12.95899 -12.82753 -12.77956 -12.71567 -12.55228 -12.52535 -12.21530 -12.11886 -11.92211 -11.90628 -11.89849 -11.52449 -11.50273 -11.34597 -11.22549 -11.16699 -11.07121 -10.74410 -10.12875 -9.47384 -9.39017 -8.67109 -6.38763 0.37939 1.00864 1.35528 1.47408 1.50224 2.10137 2.18827 2.28096 2.78435 3.61609 3.69504 3.80865 3.83386 4.03713 4.11208 4.15302 4.28074 4.40217 4.40607 4.47474 4.58404 4.64649 4.66140 4.70773 4.78427 4.85048 4.87288 4.89769 4.94863 5.04465 5.05928 5.06828 5.08123 5.16345 5.18842 5.19643 5.24038 5.25900 5.30946 5.38518 5.42610 5.47474 5.48948 5.52775 5.59466 5.61483 5.86075 5.92190 6.04871 6.28180 6.50944 6.68794 6.87104 6.94307 7.31736 8.29455 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027082 B = 0.002201 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.652916 B =12719.877048 C =13467.322352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.104 4.104 6 C -0.064 4.064 7 C -0.144 4.144 8 C -0.145 4.145 9 C 0.128 3.872 10 N -0.708 5.708 11 C 0.557 3.443 12 O -0.592 6.592 13 C -0.140 4.140 14 C -0.198 4.198 15 C -0.094 4.094 16 C -0.217 4.217 17 C 0.066 3.934 18 C -0.498 4.498 19 H 0.085 0.915 20 C 0.029 3.971 21 N -0.825 5.825 22 Si 0.983 3.017 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.251 1.251 26 C -0.132 4.132 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.411 0.589 47 H 0.134 0.866 48 H 0.140 0.860 49 H 0.109 0.891 50 H 0.286 0.714 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.648 -17.903 -2.076 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.065 4.065 7 C -0.202 4.202 8 C -0.202 4.202 9 C 0.005 3.995 10 N -0.361 5.361 11 C 0.347 3.653 12 O -0.474 6.474 13 C -0.143 4.143 14 C -0.218 4.218 15 C -0.112 4.112 16 C -0.237 4.237 17 C 0.064 3.936 18 C -0.527 4.527 19 H 0.103 0.897 20 C -0.186 4.186 21 N -0.451 5.451 22 Si 0.804 3.196 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.175 1.175 26 C -0.152 4.152 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.250 0.750 47 H 0.152 0.848 48 H 0.158 0.842 49 H 0.127 0.873 50 H 0.097 0.903 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.271 -17.057 -1.921 22.975 hybrid contribution 0.437 1.049 0.065 1.138 sum -14.834 -16.008 -1.856 21.903 Atomic orbital electron populations 1.21793 0.95913 1.01795 1.01709 1.21528 0.95881 0.96650 1.02126 1.21617 0.95454 0.96949 1.01771 1.21664 0.95104 0.95615 1.02865 1.21546 0.92251 0.98229 1.02163 1.20733 0.96547 0.91901 0.97278 1.21956 1.00926 1.01237 0.96037 1.21963 1.00897 1.01268 0.96099 1.21483 0.78990 0.98191 1.00869 1.45788 1.07454 1.07902 1.74982 1.18775 0.88107 0.83612 0.74787 1.90663 1.71041 1.33402 1.52337 1.19801 0.91379 0.95528 1.07566 1.20818 0.94461 0.95125 1.11353 1.20923 0.93841 0.97578 0.98895 1.21408 0.98892 0.92478 1.10937 1.17957 0.91785 0.94023 0.89811 1.19849 1.01702 0.93378 1.37757 0.89691 1.26878 0.94448 1.05415 0.91899 1.69889 1.19418 1.32727 1.23038 0.85234 0.79426 0.75361 0.79628 1.18500 1.19727 1.17492 1.21438 0.94613 0.96230 1.02950 0.92927 0.92877 0.92399 0.91870 0.91929 0.92445 0.92361 0.91042 0.91136 0.92084 0.91942 0.92905 0.90002 0.92859 0.93036 0.89978 0.92962 0.93182 0.92895 0.74989 0.84820 0.84243 0.87260 0.90316 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.34 5.93 30.59 0.18 -1.15 16 3 C -0.12 -1.45 5.21 30.59 0.16 -1.29 16 4 C -0.12 -1.40 4.51 30.59 0.14 -1.26 16 5 C -0.10 -1.64 4.27 30.59 0.13 -1.51 16 6 C -0.06 -1.18 0.56 -52.18 -0.03 -1.21 16 7 C -0.14 -2.37 7.95 71.98 0.57 -1.80 16 8 C -0.15 -2.46 7.95 71.98 0.57 -1.88 16 9 C 0.13 3.56 4.56 86.38 0.39 3.95 16 10 N -0.71 -22.96 4.91 -465.93 -2.29 -25.25 16 11 C 0.56 25.23 7.77 86.80 0.67 25.90 16 12 O -0.59 -31.87 16.33 -3.85 -0.06 -31.93 16 13 C -0.14 -6.73 5.87 -20.13 -0.12 -6.85 16 14 C -0.20 -7.84 9.55 22.70 0.22 -7.63 16 15 C -0.09 -3.75 10.01 22.17 0.22 -3.53 16 16 C -0.22 -10.22 9.78 22.77 0.22 -10.00 16 17 C 0.07 3.66 5.57 -21.32 -0.12 3.55 16 18 C -0.50 -27.41 9.05 23.47 0.21 -27.20 16 19 H 0.09 4.39 7.91 -2.91 -0.02 4.37 16 20 C 0.03 1.51 5.14 85.25 0.44 1.95 16 21 N -0.83 -46.83 10.95 21.82 0.24 -46.59 16 22 Si 0.98 40.14 29.60 68.60 2.03 42.17 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 26 C -0.13 -7.46 8.23 23.01 0.19 -7.27 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.07 0.80 6.43 -2.39 -0.02 0.79 16 35 H 0.07 0.81 6.43 -2.39 -0.02 0.79 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.05 0.91 6.86 -2.39 -0.02 0.90 16 39 H 0.08 1.01 6.43 -2.39 -0.02 1.00 16 40 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 1.05 6.43 -2.39 -0.02 1.03 16 43 H 0.05 0.94 6.86 -2.39 -0.02 0.92 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.41 10.97 4.18 -92.71 -0.39 10.58 16 47 H 0.13 4.02 6.38 -2.91 -0.02 4.00 16 48 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 49 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 50 H 0.29 15.02 8.30 -92.71 -0.77 14.25 16 51 H 0.10 6.16 5.74 -2.91 -0.02 6.14 16 Total: -1.00 -68.68 398.85 5.20 -63.47 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 0.51 Total: 36.26 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 4.77 Total: -38.12 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -2.05 Total: -71.84 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.06 Total: -31.93 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -68.68 5.20 -63.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755414007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.133 kcal (2) G-P(sol) polarization free energy of solvation -68.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds