Wall clock time and date at job start Tue Mar 31 2020 11:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00284 * 2 1 4 4 C 1.50701 * 109.47222 * 293.95504 * 3 2 1 5 5 C 1.38294 * 119.92869 * 269.72449 * 4 3 2 6 6 C 1.38107 * 120.06913 * 179.72481 * 5 4 3 7 7 C 1.38883 * 119.92339 * 0.56893 * 6 5 4 8 8 O 1.35756 * 120.06351 * 179.68275 * 7 6 5 9 9 C 1.34835 * 116.99488 * 174.48685 * 8 7 6 10 10 H 1.07993 * 120.00072 * 5.05544 * 9 8 7 11 11 C 1.38656 * 119.99768 * 185.05779 * 9 8 7 12 12 N 1.31556 * 119.99920 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00123 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46900 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46953 * 119.99759 * 13 11 9 16 16 H 1.48495 * 109.46918 * 239.99941 * 13 11 9 17 17 C 1.38880 * 119.86666 * 359.70536 * 7 6 5 18 18 C 1.38094 * 119.92955 * 359.97438 * 17 7 6 19 19 C 1.46903 * 111.00007 * 123.95721 * 2 1 3 20 20 C 1.53001 * 109.47126 * 306.04314 * 19 2 1 21 21 C 1.52992 * 109.47291 * 179.97438 * 20 19 2 22 22 C 1.53000 * 109.47327 * 300.00284 * 21 20 19 23 23 C 1.52997 * 109.47131 * 299.99895 * 22 21 20 24 24 C 1.53004 * 109.47038 * 179.97438 * 22 21 20 25 25 C 1.52996 * 109.47095 * 60.00162 * 22 21 20 26 26 C 1.53000 * 109.47296 * 66.04479 * 19 2 1 27 27 H 1.08999 * 109.46704 * 296.04230 * 1 2 3 28 28 H 1.08990 * 109.46866 * 56.04645 * 1 2 3 29 29 H 1.08997 * 109.46879 * 176.04805 * 1 2 3 30 30 H 1.09002 * 109.46870 * 53.95380 * 3 2 1 31 31 H 1.08999 * 109.47798 * 173.95321 * 3 2 1 32 32 H 1.08001 * 119.96945 * 359.97438 * 5 4 3 33 33 H 1.07997 * 120.03960 * 180.27163 * 6 5 4 34 34 H 0.97005 * 120.00159 * 179.97438 * 12 11 9 35 35 H 1.07998 * 120.03358 * 179.97438 * 17 7 6 36 36 H 1.08003 * 119.97131 * 180.02562 * 18 17 7 37 37 H 1.09006 * 109.47048 * 186.04986 * 19 2 1 38 38 H 1.09001 * 109.46856 * 300.00284 * 20 19 2 39 39 H 1.09007 * 109.46876 * 59.99923 * 20 19 2 40 40 H 1.09006 * 109.47400 * 179.97438 * 21 20 19 41 41 H 1.09006 * 109.46853 * 60.00690 * 21 20 19 42 42 H 1.09001 * 109.47253 * 180.02562 * 23 22 21 43 43 H 1.09006 * 109.46777 * 299.99850 * 23 22 21 44 44 H 1.08997 * 109.47066 * 59.99816 * 23 22 21 45 45 H 1.09006 * 109.47099 * 300.00381 * 24 22 21 46 46 H 1.08998 * 109.47134 * 59.99798 * 24 22 21 47 47 H 1.09001 * 109.46770 * 180.02562 * 24 22 21 48 48 H 1.09001 * 109.47237 * 180.02562 * 25 22 21 49 49 H 1.08996 * 109.47075 * 59.99613 * 25 22 21 50 50 H 1.08997 * 109.46949 * 300.00234 * 26 19 2 51 51 H 1.09001 * 109.47065 * 60.00460 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 6 2.4980 1.9687 -2.3778 6 6 2.1698 2.5821 -3.5708 7 6 0.9790 3.2881 -3.6822 8 8 0.6565 3.8976 -4.8516 9 6 -0.5628 4.4681 -4.9285 10 1 -1.2006 4.4987 -4.0575 11 6 -0.9978 5.0153 -6.1260 12 7 -0.2207 4.9783 -7.1868 13 14 -2.6868 5.8063 -6.2325 14 1 -3.3582 5.7196 -4.9108 15 1 -2.5420 7.2319 -6.6221 16 1 -3.5029 5.0956 -7.2493 17 6 0.1191 3.3698 -2.5947 18 6 0.4500 2.7487 -1.4065 19 6 1.9954 -0.7661 1.1376 20 6 1.3858 -0.2345 2.4363 21 6 1.9336 -1.0327 3.6210 22 6 1.5691 -2.5091 3.4534 23 6 0.0471 -2.6558 3.3998 24 6 2.1175 -3.3074 4.6379 25 6 2.1788 -3.0407 2.1548 26 6 1.6314 -2.2427 0.9703 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 1.5611 1.9273 0.8309 31 1 3.0798 1.3444 0.1082 32 1 3.4263 1.4239 -2.2889 33 1 2.8405 2.5169 -4.4147 34 1 -0.5252 5.3608 -8.0247 35 1 -0.8074 3.9184 -2.6781 36 1 -0.2185 2.8114 -0.5605 37 1 3.0798 -0.6611 1.1756 38 1 1.6452 0.8175 2.5554 39 1 0.3015 -0.3393 2.3982 40 1 1.4996 -0.6536 4.5463 41 1 3.0180 -0.9281 3.6592 42 1 -0.2126 -3.7077 3.2808 43 1 -0.3872 -2.2771 4.3251 44 1 -0.3432 -2.0871 2.5558 45 1 3.2018 -3.2028 4.6757 46 1 1.6835 -2.9288 5.5633 47 1 1.8582 -4.3594 4.5182 48 1 1.9188 -4.0925 2.0351 49 1 3.2631 -2.9362 2.1930 50 1 0.5472 -2.3475 0.9322 51 1 2.0658 -2.6214 0.0451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756028012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:26 Heat of formation + Delta-G solvation = -19.211675 kcal Electronic energy + Delta-G solvation = -26803.602113 eV Core-core repulsion = 23281.682406 eV Total energy + Delta-G solvation = -3521.919706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.29713 -39.01681 -37.37624 -35.92389 -32.47374 -31.91344 -31.01594 -30.14847 -29.58113 -27.67397 -26.85980 -26.04202 -25.14303 -23.30834 -22.75401 -21.88221 -20.51618 -19.88305 -18.51035 -17.93968 -16.91344 -16.05316 -15.53284 -15.16740 -15.00546 -14.83480 -14.50581 -14.28053 -14.08873 -13.82620 -13.56667 -13.40667 -13.32916 -12.84869 -12.76435 -12.64690 -12.51400 -12.25724 -12.16779 -11.93997 -11.76633 -11.58032 -11.50843 -11.47827 -11.25345 -11.10600 -11.02767 -10.75813 -10.63347 -10.54418 -10.41701 -10.36090 -10.27402 -10.12027 -9.29764 -8.81547 -8.14972 -8.06028 -7.12824 -6.43041 -4.01710 2.26303 2.32845 3.12844 3.14505 3.19981 3.97808 4.03467 4.39533 4.43390 4.57603 4.70813 4.81643 4.96192 5.11237 5.12221 5.17839 5.20351 5.27114 5.32617 5.33275 5.38172 5.40524 5.43037 5.51057 5.59845 5.60451 5.63782 5.69699 5.71511 5.78694 5.78768 5.84182 5.89199 5.92347 5.95302 5.99583 6.06423 6.08786 6.19081 6.25594 6.28189 6.34832 6.47173 6.75153 6.94500 7.06281 7.20532 7.24828 7.33620 7.44991 7.48579 7.87421 8.02316 9.02840 9.73991 10.75191 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029868 B = 0.002297 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.225880 B =12186.134176 C =12578.558342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.529 5.529 3 C 0.113 3.887 4 C -0.176 4.176 5 C -0.053 4.053 6 C -0.194 4.194 7 C 0.155 3.845 8 O -0.179 6.179 9 C -0.390 4.390 10 H 0.092 0.908 11 C 0.038 3.962 12 N -0.863 5.863 13 Si 0.940 3.060 14 H -0.267 1.267 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.235 4.235 18 C -0.066 4.066 19 C 0.086 3.914 20 C -0.156 4.156 21 C -0.102 4.102 22 C -0.066 4.066 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.106 4.106 26 C -0.112 4.112 27 H 0.024 0.976 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.269 0.731 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.061 0.939 49 H 0.061 0.939 50 H 0.065 0.935 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 -13.932 21.374 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.251 5.251 3 C -0.014 4.014 4 C -0.178 4.178 5 C -0.072 4.072 6 C -0.213 4.213 7 C 0.101 3.899 8 O -0.083 6.083 9 C -0.467 4.467 10 H 0.109 0.891 11 C -0.166 4.166 12 N -0.498 5.498 13 Si 0.765 3.235 14 H -0.192 1.192 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.254 4.254 18 C -0.084 4.084 19 C -0.022 4.022 20 C -0.195 4.195 21 C -0.140 4.140 22 C -0.066 4.066 23 C -0.202 4.202 24 C -0.198 4.198 25 C -0.144 4.144 26 C -0.150 4.150 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.143 0.857 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.213 -14.040 20.466 25.027 hybrid contribution -1.226 0.855 0.711 1.655 sum 1.987 -13.185 21.177 25.025 Atomic orbital electron populations 1.22498 0.87937 1.01761 1.00884 1.62266 1.07943 1.13869 1.41011 1.20797 0.99076 0.87181 0.94339 1.19081 0.97357 1.05539 0.95796 1.20449 0.98075 0.96973 0.91718 1.20219 0.97827 1.04580 0.98716 1.19396 0.93122 0.90545 0.86791 1.83984 1.34213 1.60984 1.29104 1.21358 0.91045 1.36346 0.97917 0.89093 1.25286 0.99663 0.97404 0.94246 1.70050 1.36246 1.42574 1.00952 0.85656 0.80314 0.78720 0.78781 1.19153 1.20176 1.20156 1.21114 1.02608 1.07835 0.93826 1.20578 0.95300 0.96214 0.96339 1.21733 0.99189 0.93564 0.87759 1.22298 1.01627 0.99575 0.96004 1.21512 1.00659 0.94055 0.97794 1.20547 0.95689 0.95178 0.95190 1.21968 0.94865 1.01511 1.01815 1.21866 1.00755 0.99727 0.97492 1.21570 1.00073 0.99074 0.93681 1.21598 1.01423 0.93906 0.98044 0.95763 0.90461 0.91922 0.95004 0.91119 0.87148 0.86632 0.92115 0.85727 0.88046 0.90482 0.92118 0.91138 0.92343 0.92097 0.92906 0.93056 0.91941 0.92763 0.92872 0.92776 0.91996 0.92023 0.91598 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.43 60.06 0.51 0.72 16 2 N -0.53 -6.76 4.70 -236.33 -1.11 -7.87 16 3 C 0.11 1.54 4.69 -4.98 -0.02 1.52 16 4 C -0.18 -3.02 4.89 -104.58 -0.51 -3.53 16 5 C -0.05 -0.97 9.69 -39.61 -0.38 -1.36 16 6 C -0.19 -4.17 9.99 -39.39 -0.39 -4.57 16 7 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 8 O -0.18 -5.18 9.76 0.02 0.00 -5.18 16 9 C -0.39 -11.00 9.49 30.89 0.29 -10.70 16 10 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 11 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 12 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 13 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 14 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 17 C -0.23 -5.12 9.17 -39.40 -0.36 -5.48 16 18 C -0.07 -1.20 7.89 -39.61 -0.31 -1.51 16 19 C 0.09 0.89 2.19 -67.71 -0.15 0.74 16 20 C -0.16 -1.45 4.18 -26.73 -0.11 -1.56 16 21 C -0.10 -0.81 4.73 -26.73 -0.13 -0.93 16 22 C -0.07 -0.49 0.77 -154.51 -0.12 -0.60 16 23 C -0.14 -1.08 7.78 37.16 0.29 -0.79 16 24 C -0.14 -0.92 8.47 37.16 0.31 -0.60 16 25 C -0.11 -0.83 4.73 -26.76 -0.13 -0.95 16 26 C -0.11 -1.05 4.85 -26.75 -0.13 -1.18 16 27 H 0.02 0.28 6.21 -51.93 -0.32 -0.04 16 28 H 0.08 1.14 5.88 -51.93 -0.31 0.84 16 29 H 0.06 0.72 6.47 -51.93 -0.34 0.39 16 30 H 0.03 0.42 7.00 -51.93 -0.36 0.06 16 31 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 36 H 0.10 1.62 7.98 -52.48 -0.42 1.20 16 37 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 38 H 0.06 0.60 6.91 -51.93 -0.36 0.24 16 39 H 0.07 0.68 4.61 -51.93 -0.24 0.44 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 45 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.63 4.84 -51.93 -0.25 0.38 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -29.69 380.29 -9.79 -39.48 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.44 Total: 3.23 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -1.70 Total: -26.30 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: -0.35 Total: -32.62 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.69 -9.79 -39.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756028012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.268 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds