Wall clock time and date at job start Tue Mar 31 2020 11:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00284 * 2 1 4 4 C 1.50701 * 109.47222 * 293.95504 * 3 2 1 5 5 C 1.38294 * 119.92869 * 269.72449 * 4 3 2 6 6 C 1.38107 * 120.06913 * 179.72481 * 5 4 3 7 7 C 1.38883 * 119.92339 * 0.56893 * 6 5 4 8 8 O 1.35756 * 120.06351 * 179.68275 * 7 6 5 9 9 C 1.34835 * 116.99488 * 174.48685 * 8 7 6 10 10 H 1.07993 * 120.00072 * 5.05544 * 9 8 7 11 11 C 1.38656 * 119.99768 * 185.05779 * 9 8 7 12 12 N 1.31556 * 119.99920 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00123 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46900 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46953 * 119.99759 * 13 11 9 16 16 H 1.48495 * 109.46918 * 239.99941 * 13 11 9 17 17 C 1.38880 * 119.86666 * 359.70536 * 7 6 5 18 18 C 1.38094 * 119.92955 * 359.97438 * 17 7 6 19 19 C 1.46903 * 111.00007 * 123.95721 * 2 1 3 20 20 C 1.53001 * 109.47126 * 306.04314 * 19 2 1 21 21 C 1.52992 * 109.47291 * 179.97438 * 20 19 2 22 22 C 1.53000 * 109.47327 * 300.00284 * 21 20 19 23 23 C 1.52997 * 109.47131 * 299.99895 * 22 21 20 24 24 C 1.53004 * 109.47038 * 179.97438 * 22 21 20 25 25 C 1.52996 * 109.47095 * 60.00162 * 22 21 20 26 26 C 1.53000 * 109.47296 * 66.04479 * 19 2 1 27 27 H 1.08999 * 109.46704 * 296.04230 * 1 2 3 28 28 H 1.08990 * 109.46866 * 56.04645 * 1 2 3 29 29 H 1.08997 * 109.46879 * 176.04805 * 1 2 3 30 30 H 1.09002 * 109.46870 * 53.95380 * 3 2 1 31 31 H 1.08999 * 109.47798 * 173.95321 * 3 2 1 32 32 H 1.08001 * 119.96945 * 359.97438 * 5 4 3 33 33 H 1.07997 * 120.03960 * 180.27163 * 6 5 4 34 34 H 0.97005 * 120.00159 * 179.97438 * 12 11 9 35 35 H 1.07998 * 120.03358 * 179.97438 * 17 7 6 36 36 H 1.08003 * 119.97131 * 180.02562 * 18 17 7 37 37 H 1.09006 * 109.47048 * 186.04986 * 19 2 1 38 38 H 1.09001 * 109.46856 * 300.00284 * 20 19 2 39 39 H 1.09007 * 109.46876 * 59.99923 * 20 19 2 40 40 H 1.09006 * 109.47400 * 179.97438 * 21 20 19 41 41 H 1.09006 * 109.46853 * 60.00690 * 21 20 19 42 42 H 1.09001 * 109.47253 * 180.02562 * 23 22 21 43 43 H 1.09006 * 109.46777 * 299.99850 * 23 22 21 44 44 H 1.08997 * 109.47066 * 59.99816 * 23 22 21 45 45 H 1.09006 * 109.47099 * 300.00381 * 24 22 21 46 46 H 1.08998 * 109.47134 * 59.99798 * 24 22 21 47 47 H 1.09001 * 109.46770 * 180.02562 * 24 22 21 48 48 H 1.09001 * 109.47237 * 180.02562 * 25 22 21 49 49 H 1.08996 * 109.47075 * 59.99613 * 25 22 21 50 50 H 1.08997 * 109.46949 * 300.00234 * 26 19 2 51 51 H 1.09001 * 109.47065 * 60.00460 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 6 2.4980 1.9687 -2.3778 6 6 2.1698 2.5821 -3.5708 7 6 0.9790 3.2881 -3.6822 8 8 0.6565 3.8976 -4.8516 9 6 -0.5628 4.4681 -4.9285 10 1 -1.2006 4.4987 -4.0575 11 6 -0.9978 5.0153 -6.1260 12 7 -0.2207 4.9783 -7.1868 13 14 -2.6868 5.8063 -6.2325 14 1 -3.3582 5.7196 -4.9108 15 1 -2.5420 7.2319 -6.6221 16 1 -3.5029 5.0956 -7.2493 17 6 0.1191 3.3698 -2.5947 18 6 0.4500 2.7487 -1.4065 19 6 1.9954 -0.7661 1.1376 20 6 1.3858 -0.2345 2.4363 21 6 1.9336 -1.0327 3.6210 22 6 1.5691 -2.5091 3.4534 23 6 0.0471 -2.6558 3.3998 24 6 2.1175 -3.3074 4.6379 25 6 2.1788 -3.0407 2.1548 26 6 1.6314 -2.2427 0.9703 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 1.5611 1.9273 0.8309 31 1 3.0798 1.3444 0.1082 32 1 3.4263 1.4239 -2.2889 33 1 2.8405 2.5169 -4.4147 34 1 -0.5252 5.3608 -8.0247 35 1 -0.8074 3.9184 -2.6781 36 1 -0.2185 2.8114 -0.5605 37 1 3.0798 -0.6611 1.1756 38 1 1.6452 0.8175 2.5554 39 1 0.3015 -0.3393 2.3982 40 1 1.4996 -0.6536 4.5463 41 1 3.0180 -0.9281 3.6592 42 1 -0.2126 -3.7077 3.2808 43 1 -0.3872 -2.2771 4.3251 44 1 -0.3432 -2.0871 2.5558 45 1 3.2018 -3.2028 4.6757 46 1 1.6835 -2.9288 5.5633 47 1 1.8582 -4.3594 4.5182 48 1 1.9188 -4.0925 2.0351 49 1 3.2631 -2.9362 2.1930 50 1 0.5472 -2.3475 0.9322 51 1 2.0658 -2.6214 0.0451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756028012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:26 Heat of formation + Delta-G solvation = -35.119267 kcal Electronic energy + Delta-G solvation = -26804.291918 eV Core-core repulsion = 23281.682406 eV Total energy + Delta-G solvation = -3522.609511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.17066 -40.61871 -38.74966 -37.21138 -34.33701 -33.01491 -31.78625 -31.69261 -30.89959 -28.30884 -27.91568 -27.49934 -26.53890 -24.27797 -23.61987 -23.52722 -21.89704 -20.83372 -19.82391 -19.16398 -18.80020 -17.00216 -16.52568 -16.45252 -16.29124 -15.95490 -15.76166 -15.52500 -15.40638 -15.18211 -14.78989 -14.68334 -14.34356 -14.21410 -13.96837 -13.72799 -13.53293 -13.28572 -13.14297 -12.98224 -12.81485 -12.64493 -12.62896 -12.49190 -12.38186 -12.24535 -12.19351 -12.10736 -11.94756 -11.80259 -11.60086 -11.15695 -11.10960 -10.97433 -10.84256 -10.78256 -9.74277 -9.11802 -8.83358 -8.46783 -6.14718 0.62117 0.70041 1.34438 1.42922 1.52872 2.17592 2.76162 3.05715 3.35692 3.54347 3.76658 3.77254 3.96768 4.03441 4.05648 4.14134 4.22079 4.28319 4.40065 4.48057 4.49267 4.53030 4.59929 4.61563 4.64708 4.70899 4.76596 4.82490 4.84102 4.87182 4.92127 4.99046 5.09081 5.10530 5.12079 5.14738 5.16186 5.20791 5.23577 5.27353 5.30948 5.32933 5.40347 5.51006 5.59058 5.60393 5.68255 5.72822 5.83572 6.03856 6.19849 6.24308 6.34437 6.98050 7.79918 8.76809 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029868 B = 0.002297 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.225880 B =12186.134176 C =12578.558342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.116 3.884 4 C -0.150 4.150 5 C -0.049 4.049 6 C -0.206 4.206 7 C 0.113 3.887 8 O -0.234 6.234 9 C -0.411 4.411 10 H 0.101 0.899 11 C -0.025 4.025 12 N -0.921 5.921 13 Si 1.019 2.981 14 H -0.252 1.252 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.242 4.242 18 C -0.060 4.060 19 C 0.089 3.911 20 C -0.151 4.151 21 C -0.099 4.099 22 C -0.064 4.064 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.102 4.102 26 C -0.108 4.108 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.111 0.889 34 H 0.272 0.728 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 -15.267 24.880 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.263 5.263 3 C -0.011 4.011 4 C -0.151 4.151 5 C -0.067 4.067 6 C -0.225 4.225 7 C 0.063 3.937 8 O -0.141 6.141 9 C -0.488 4.488 10 H 0.118 0.882 11 C -0.222 4.222 12 N -0.560 5.560 13 Si 0.838 3.162 14 H -0.175 1.175 15 H -0.193 1.193 16 H -0.193 1.193 17 C -0.262 4.262 18 C -0.079 4.079 19 C -0.019 4.019 20 C -0.189 4.189 21 C -0.137 4.137 22 C -0.064 4.064 23 C -0.201 4.201 24 C -0.196 4.196 25 C -0.140 4.140 26 C -0.146 4.146 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.150 0.850 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.041 -15.410 24.034 28.711 hybrid contribution -0.999 1.050 -0.096 1.452 sum 2.042 -14.361 23.938 27.989 Atomic orbital electron populations 1.22447 0.87933 1.02052 1.00388 1.62200 1.08062 1.13232 1.42824 1.20795 1.00332 0.87724 0.92252 1.19590 0.95763 1.02898 0.96887 1.20825 0.99408 0.95952 0.90515 1.20460 0.97043 1.04806 1.00176 1.19928 0.94940 0.92132 0.86699 1.83946 1.35018 1.63598 1.31515 1.21839 0.91475 1.36713 0.98726 0.88214 1.26601 1.04270 0.97868 0.93487 1.70195 1.38922 1.45021 1.01838 0.84524 0.74511 0.77668 0.79454 1.17512 1.19290 1.19345 1.21200 1.02049 1.08361 0.94552 1.20881 0.96174 0.95025 0.95788 1.21759 0.99229 0.93579 0.87305 1.22226 1.01343 0.99482 0.95885 1.21493 1.00812 0.94098 0.97324 1.20536 0.95575 0.95018 0.95301 1.21956 0.94947 1.01589 1.01586 1.21841 1.00923 0.99762 0.97122 1.21539 1.00185 0.99085 0.93172 1.21555 1.01212 0.93535 0.98314 0.94478 0.92851 0.91124 0.93626 0.89429 0.83867 0.87101 0.91877 0.86591 0.85014 0.90216 0.92454 0.91470 0.91897 0.91771 0.92635 0.92782 0.92757 0.92461 0.92568 0.92462 0.91513 0.91715 0.91909 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.43 127.69 1.08 1.52 16 2 N -0.54 -12.13 4.70 -901.63 -4.24 -16.37 16 3 C 0.12 2.73 4.69 85.56 0.40 3.13 16 4 C -0.15 -4.75 4.89 -19.83 -0.10 -4.85 16 5 C -0.05 -1.68 9.69 22.25 0.22 -1.47 16 6 C -0.21 -9.02 9.99 22.39 0.22 -8.80 16 7 C 0.11 5.78 6.65 22.58 0.15 5.93 16 8 O -0.23 -14.39 9.76 -22.85 -0.22 -14.62 16 9 C -0.41 -24.38 9.49 67.92 0.64 -23.74 16 10 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 11 C -0.03 -1.45 5.49 84.83 0.47 -0.98 16 12 N -0.92 -57.39 13.67 21.61 0.30 -57.09 16 13 Si 1.02 43.50 29.55 68.60 2.03 45.52 16 14 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 15 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 17 C -0.24 -10.75 9.17 22.39 0.21 -10.55 16 18 C -0.06 -2.10 7.89 22.25 0.18 -1.92 16 19 C 0.09 1.55 2.19 44.92 0.10 1.65 16 20 C -0.15 -2.30 4.18 30.59 0.13 -2.17 16 21 C -0.10 -1.25 4.73 30.59 0.14 -1.11 16 22 C -0.06 -0.76 0.77 -52.18 -0.04 -0.80 16 23 C -0.14 -1.78 7.78 71.98 0.56 -1.22 16 24 C -0.14 -1.41 8.47 71.98 0.61 -0.80 16 25 C -0.10 -1.31 4.73 30.58 0.14 -1.17 16 26 C -0.11 -1.76 4.85 30.58 0.15 -1.61 16 27 H 0.04 0.74 6.21 -2.39 -0.01 0.73 16 28 H 0.05 1.46 5.88 -2.39 -0.01 1.45 16 29 H 0.07 1.48 6.47 -2.39 -0.02 1.46 16 30 H 0.05 1.00 7.00 -2.39 -0.02 0.98 16 31 H 0.09 1.84 7.87 -2.39 -0.02 1.83 16 32 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 33 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 34 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 35 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 36 H 0.13 3.80 7.98 -2.91 -0.02 3.78 16 37 H 0.08 1.38 7.93 -2.38 -0.02 1.37 16 38 H 0.06 0.93 6.91 -2.39 -0.02 0.91 16 39 H 0.07 1.09 4.61 -2.38 -0.01 1.08 16 40 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.05 0.76 4.81 -2.39 -0.01 0.75 16 45 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.06 1.06 4.84 -2.39 -0.01 1.05 16 51 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -68.66 380.29 4.02 -64.64 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.90 Total: 26.85 kcal Atomic # 6 Polarization: -54.20 SS G_CDS: 5.25 Total: -48.95 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -3.94 Total: -73.46 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.22 Total: -14.62 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.66 4.02 -64.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756028012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.524 kcal (2) G-P(sol) polarization free energy of solvation -68.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds