Wall clock time and date at job start Tue Mar 31 2020 12:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47119 * 2 1 4 4 C 1.53000 * 109.47379 * 119.99864 * 2 1 3 5 5 C 1.53000 * 109.47204 * 65.00038 * 4 2 1 6 6 C 1.52997 * 109.47202 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47202 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47204 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47108 * 179.97438 * 8 7 6 10 10 N 1.46492 * 109.47134 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00403 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99740 * 0.02562 * 11 10 9 13 13 C 1.47639 * 120.00339 * 180.02562 * 11 10 9 14 14 C 1.40007 * 119.89573 * 0.24611 * 13 11 10 15 15 C 1.36318 * 120.10468 * 180.25591 * 14 13 11 16 16 C 1.40884 * 119.89177 * 359.47662 * 15 14 13 17 17 C 1.41116 * 120.10368 * 180.29746 * 16 15 14 18 18 H 1.07997 * 120.00134 * 154.53831 * 17 16 15 19 19 C 1.40227 * 119.99714 * 334.53632 * 17 16 15 20 20 N 1.30644 * 120.00033 * 343.04996 * 19 17 16 21 21 Si 1.86799 * 119.99848 * 163.05218 * 19 17 16 22 22 H 1.48501 * 109.47314 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47265 * 119.99809 * 21 19 17 24 24 H 1.48498 * 109.47305 * 239.99792 * 21 19 17 25 25 C 1.40889 * 119.79628 * 0.27580 * 16 15 14 26 26 C 1.36316 * 119.88883 * 359.97438 * 25 16 15 27 27 H 1.08998 * 109.47288 * 60.00135 * 1 2 3 28 28 H 1.09003 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47756 * 300.00243 * 1 2 3 30 30 H 1.08994 * 109.47370 * 239.99856 * 2 1 3 31 31 H 1.09004 * 109.47461 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47116 * 299.99956 * 3 2 1 33 33 H 1.09001 * 109.47421 * 59.99951 * 3 2 1 34 34 H 1.09003 * 109.46794 * 304.99717 * 4 2 1 35 35 H 1.09004 * 109.47077 * 185.00234 * 4 2 1 36 36 H 1.09000 * 109.46777 * 60.00103 * 5 4 2 37 37 H 1.08998 * 109.46585 * 300.00190 * 5 4 2 38 38 H 1.09003 * 109.47107 * 59.99488 * 6 5 4 39 39 H 1.09004 * 109.46766 * 300.00004 * 6 5 4 40 40 H 1.09000 * 109.46777 * 59.99720 * 7 6 5 41 41 H 1.09003 * 109.46932 * 300.00130 * 7 6 5 42 42 H 1.08997 * 109.46730 * 60.00110 * 8 7 6 43 43 H 1.08995 * 109.47087 * 300.00466 * 8 7 6 44 44 H 1.09000 * 109.46513 * 60.00323 * 9 8 7 45 45 H 1.08994 * 109.47508 * 300.00819 * 9 8 7 46 46 H 0.97005 * 120.00342 * 0.02562 * 10 9 8 47 47 H 1.08000 * 119.95276 * 0.03420 * 14 13 11 48 48 H 1.08007 * 120.05277 * 179.74755 * 15 14 13 49 49 H 0.97005 * 119.99903 * 179.97438 * 20 19 17 50 50 H 1.08002 * 120.05358 * 180.02562 * 25 16 15 51 51 H 1.08002 * 119.94674 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1880 6 6 2.1448 -2.9165 2.4375 7 6 1.7395 -4.3906 2.3766 8 6 2.2496 -5.1118 3.6259 9 6 1.8437 -6.5857 3.5652 10 7 2.3316 -7.2761 4.7616 11 6 2.0907 -8.5920 4.9258 12 8 1.4688 -9.2062 4.0805 13 6 2.5818 -9.2877 6.1318 14 6 3.2932 -8.5772 7.1061 15 6 3.7532 -9.2164 8.2189 16 6 3.5022 -10.5917 8.3928 17 6 3.9709 -11.2565 9.5459 18 1 3.4699 -12.1464 9.8973 19 6 5.0870 -10.7616 10.2355 20 7 5.8873 -9.9073 9.6554 21 14 5.4296 -11.3237 11.9837 22 1 4.3815 -12.2861 12.4086 23 1 6.7593 -11.9825 12.0402 24 1 5.4201 -10.1492 12.8922 25 6 2.7814 -11.3013 7.4120 26 6 2.3298 -10.6547 6.3002 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6054 -0.2616 2.1370 35 1 3.1263 -0.6442 1.2951 36 1 2.0699 -2.6549 0.3003 37 1 0.5489 -2.2723 1.1421 38 1 1.7098 -2.4568 3.3251 39 1 3.2311 -2.8395 2.4838 40 1 2.1741 -4.8505 1.4891 41 1 0.6531 -4.4671 2.3305 42 1 1.8153 -4.6520 4.5136 43 1 3.3358 -5.0352 3.6715 44 1 2.2777 -7.0458 2.6775 45 1 0.7574 -6.6620 3.5197 46 1 2.8280 -6.7863 5.4358 47 1 3.4810 -7.5219 6.9744 48 1 4.3054 -8.6684 8.9680 49 1 6.6593 -9.5647 10.1326 50 1 2.5862 -12.3557 7.5413 51 1 1.7775 -11.1978 5.5476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758279252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:27 Heat of formation + Delta-G solvation = -78.244737 kcal Electronic energy + Delta-G solvation = -24620.813546 eV Core-core repulsion = 21096.333974 eV Total energy + Delta-G solvation = -3524.479572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.09357 -37.80604 -37.15476 -35.91992 -33.96015 -33.85407 -31.48971 -30.08742 -29.43770 -27.78008 -27.52926 -25.86739 -24.04777 -21.97730 -21.48293 -21.20982 -20.81884 -20.23407 -19.44244 -17.52296 -16.74539 -16.32978 -15.64793 -15.54347 -15.23741 -14.79777 -14.63345 -14.13520 -14.04255 -13.82864 -13.66546 -13.23313 -12.94725 -12.86515 -12.69823 -12.65895 -12.42821 -12.10672 -11.94145 -11.85920 -11.76900 -11.60430 -11.37347 -11.30456 -11.25438 -11.14169 -10.94623 -10.93323 -10.79180 -10.65642 -10.61577 -10.48933 -10.02742 -9.55884 -9.36030 -8.94414 -8.55682 -7.71620 -7.52836 -7.02597 -4.60037 2.23833 2.90812 2.95271 3.00871 3.03884 3.74501 3.81090 3.89035 4.32714 4.49087 4.55659 4.57937 4.72517 4.79510 4.91205 4.99320 5.15353 5.24422 5.28213 5.30537 5.35555 5.43829 5.50805 5.56276 5.57868 5.61315 5.65685 5.67496 5.74098 5.83604 5.84946 5.89427 5.93759 6.03358 6.05604 6.06999 6.15414 6.21464 6.28291 6.32614 6.77279 6.83439 6.96522 7.07831 7.13930 7.44403 7.66004 7.79737 7.86623 8.07738 8.27033 8.40559 8.63705 8.75690 9.10491 9.89633 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.001631 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.262728 B =17161.977289 C =18236.987529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.132 4.132 9 C 0.123 3.877 10 N -0.743 5.743 11 C 0.570 3.430 12 O -0.577 6.577 13 C -0.284 4.284 14 C -0.063 4.063 15 C -0.177 4.177 16 C 0.128 3.872 17 C -0.443 4.443 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.774 5.774 21 Si 0.913 3.087 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.269 1.269 25 C -0.238 4.238 26 C -0.023 4.023 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.397 0.603 47 H 0.089 0.911 48 H 0.120 0.880 49 H 0.286 0.714 50 H 0.098 0.902 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 18.527 -11.210 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.169 4.169 9 C -0.001 4.001 10 N -0.396 5.396 11 C 0.365 3.635 12 O -0.459 6.459 13 C -0.288 4.288 14 C -0.082 4.082 15 C -0.196 4.196 16 C 0.125 3.875 17 C -0.471 4.471 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.397 5.397 21 Si 0.737 3.263 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.194 1.194 25 C -0.257 4.257 26 C -0.042 4.042 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.232 0.768 47 H 0.107 0.893 48 H 0.138 0.862 49 H 0.097 0.903 50 H 0.116 0.884 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.044 18.234 -11.787 22.086 hybrid contribution 0.611 0.109 1.066 1.234 sum -3.433 18.343 -10.721 21.522 Atomic orbital electron populations 1.21897 0.95325 1.01935 1.01536 1.21136 0.95926 0.96078 0.98590 1.21853 1.00912 0.96158 1.01638 1.21669 1.00765 0.95272 0.97612 1.21666 1.01220 0.94858 0.98188 1.21601 1.01054 0.94991 0.98054 1.21503 1.01221 0.94916 0.97748 1.21809 1.01645 0.94602 0.98890 1.21184 0.99153 0.91088 0.88664 1.45925 1.59768 1.10327 1.23616 1.18596 0.77977 0.80629 0.86305 1.90629 1.43240 1.66450 1.45598 1.18931 1.16281 0.95363 0.98238 1.20476 0.96486 0.96857 0.94425 1.20972 1.05177 0.94751 0.98714 1.17801 0.87506 0.91560 0.90653 1.19874 1.09773 1.10063 1.07418 0.89693 1.26091 0.95003 0.93508 1.00073 1.69749 1.10023 1.22792 1.37156 0.86172 0.79287 0.79776 0.81112 1.18064 1.19682 1.19414 1.20729 1.10156 0.98481 0.96370 1.20370 0.95135 0.92709 0.95982 0.93002 0.92330 0.92769 0.91353 0.92769 0.92870 0.92750 0.92029 0.92066 0.92081 0.91765 0.92011 0.92005 0.91746 0.91757 0.91412 0.91373 0.92244 0.92256 0.76814 0.89329 0.86209 0.90323 0.88366 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.95 37.15 0.33 -0.56 16 2 C -0.10 -0.61 2.92 -90.62 -0.26 -0.87 16 3 C -0.15 -0.84 9.19 37.16 0.34 -0.50 16 4 C -0.12 -0.75 4.68 -26.73 -0.13 -0.88 16 5 C -0.12 -0.85 4.97 -26.73 -0.13 -0.98 16 6 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 7 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 8 C -0.13 -1.36 5.33 -26.73 -0.14 -1.50 16 9 C 0.12 1.74 5.67 -4.05 -0.02 1.72 16 10 N -0.74 -12.69 5.50 -61.32 -0.34 -13.03 16 11 C 0.57 12.44 7.76 -12.42 -0.10 12.34 16 12 O -0.58 -14.12 16.32 5.29 0.09 -14.03 16 13 C -0.28 -6.59 5.89 -104.73 -0.62 -7.21 16 14 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 15 C -0.18 -4.35 8.63 -39.27 -0.34 -4.69 16 16 C 0.13 3.28 5.57 -106.80 -0.59 2.69 16 17 C -0.44 -11.08 9.05 -37.74 -0.34 -11.42 16 18 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 19 C 0.07 1.73 5.15 -17.31 -0.09 1.64 16 20 N -0.77 -18.58 10.95 55.56 0.61 -17.97 16 21 Si 0.91 17.29 29.59 -169.99 -5.03 12.26 16 22 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 26 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.40 6.01 6.47 -40.82 -0.26 5.75 16 47 H 0.09 1.67 6.37 -52.49 -0.33 1.33 16 48 H 0.12 2.98 6.18 -52.48 -0.32 2.65 16 49 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 50 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 51 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 409.07 15.07 6.16 6.16 Total: -1.00 -28.27 409.07 -11.18 -39.45 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -9.16 Total: 8.47 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -3.50 Total: -21.31 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.27 Total: -31.00 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.09 Total: -14.03 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -28.27 -11.18 -39.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758279252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.794 kcal (2) G-P(sol) polarization free energy of solvation -28.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds