Wall clock time and date at job start Tue Mar 31 2020 12:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47119 * 2 1 4 4 C 1.53000 * 109.47379 * 119.99864 * 2 1 3 5 5 C 1.53000 * 109.47204 * 65.00038 * 4 2 1 6 6 C 1.52997 * 109.47202 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47202 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47204 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47108 * 179.97438 * 8 7 6 10 10 N 1.46492 * 109.47134 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00403 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99740 * 0.02562 * 11 10 9 13 13 C 1.47639 * 120.00339 * 180.02562 * 11 10 9 14 14 C 1.40007 * 119.89573 * 0.24611 * 13 11 10 15 15 C 1.36318 * 120.10468 * 180.25591 * 14 13 11 16 16 C 1.40884 * 119.89177 * 359.47662 * 15 14 13 17 17 C 1.41116 * 120.10368 * 180.29746 * 16 15 14 18 18 H 1.07997 * 120.00134 * 154.53831 * 17 16 15 19 19 C 1.40227 * 119.99714 * 334.53632 * 17 16 15 20 20 N 1.30644 * 120.00033 * 343.04996 * 19 17 16 21 21 Si 1.86799 * 119.99848 * 163.05218 * 19 17 16 22 22 H 1.48501 * 109.47314 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47265 * 119.99809 * 21 19 17 24 24 H 1.48498 * 109.47305 * 239.99792 * 21 19 17 25 25 C 1.40889 * 119.79628 * 0.27580 * 16 15 14 26 26 C 1.36316 * 119.88883 * 359.97438 * 25 16 15 27 27 H 1.08998 * 109.47288 * 60.00135 * 1 2 3 28 28 H 1.09003 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47756 * 300.00243 * 1 2 3 30 30 H 1.08994 * 109.47370 * 239.99856 * 2 1 3 31 31 H 1.09004 * 109.47461 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47116 * 299.99956 * 3 2 1 33 33 H 1.09001 * 109.47421 * 59.99951 * 3 2 1 34 34 H 1.09003 * 109.46794 * 304.99717 * 4 2 1 35 35 H 1.09004 * 109.47077 * 185.00234 * 4 2 1 36 36 H 1.09000 * 109.46777 * 60.00103 * 5 4 2 37 37 H 1.08998 * 109.46585 * 300.00190 * 5 4 2 38 38 H 1.09003 * 109.47107 * 59.99488 * 6 5 4 39 39 H 1.09004 * 109.46766 * 300.00004 * 6 5 4 40 40 H 1.09000 * 109.46777 * 59.99720 * 7 6 5 41 41 H 1.09003 * 109.46932 * 300.00130 * 7 6 5 42 42 H 1.08997 * 109.46730 * 60.00110 * 8 7 6 43 43 H 1.08995 * 109.47087 * 300.00466 * 8 7 6 44 44 H 1.09000 * 109.46513 * 60.00323 * 9 8 7 45 45 H 1.08994 * 109.47508 * 300.00819 * 9 8 7 46 46 H 0.97005 * 120.00342 * 0.02562 * 10 9 8 47 47 H 1.08000 * 119.95276 * 0.03420 * 14 13 11 48 48 H 1.08007 * 120.05277 * 179.74755 * 15 14 13 49 49 H 0.97005 * 119.99903 * 179.97438 * 20 19 17 50 50 H 1.08002 * 120.05358 * 180.02562 * 25 16 15 51 51 H 1.08002 * 119.94674 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1880 6 6 2.1448 -2.9165 2.4375 7 6 1.7395 -4.3906 2.3766 8 6 2.2496 -5.1118 3.6259 9 6 1.8437 -6.5857 3.5652 10 7 2.3316 -7.2761 4.7616 11 6 2.0907 -8.5920 4.9258 12 8 1.4688 -9.2062 4.0805 13 6 2.5818 -9.2877 6.1318 14 6 3.2932 -8.5772 7.1061 15 6 3.7532 -9.2164 8.2189 16 6 3.5022 -10.5917 8.3928 17 6 3.9709 -11.2565 9.5459 18 1 3.4699 -12.1464 9.8973 19 6 5.0870 -10.7616 10.2355 20 7 5.8873 -9.9073 9.6554 21 14 5.4296 -11.3237 11.9837 22 1 4.3815 -12.2861 12.4086 23 1 6.7593 -11.9825 12.0402 24 1 5.4201 -10.1492 12.8922 25 6 2.7814 -11.3013 7.4120 26 6 2.3298 -10.6547 6.3002 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6054 -0.2616 2.1370 35 1 3.1263 -0.6442 1.2951 36 1 2.0699 -2.6549 0.3003 37 1 0.5489 -2.2723 1.1421 38 1 1.7098 -2.4568 3.3251 39 1 3.2311 -2.8395 2.4838 40 1 2.1741 -4.8505 1.4891 41 1 0.6531 -4.4671 2.3305 42 1 1.8153 -4.6520 4.5136 43 1 3.3358 -5.0352 3.6715 44 1 2.2777 -7.0458 2.6775 45 1 0.7574 -6.6620 3.5197 46 1 2.8280 -6.7863 5.4358 47 1 3.4810 -7.5219 6.9744 48 1 4.3054 -8.6684 8.9680 49 1 6.6593 -9.5647 10.1326 50 1 2.5862 -12.3557 7.5413 51 1 1.7775 -11.1978 5.5476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758279252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:26 Heat of formation + Delta-G solvation = -90.069066 kcal Electronic energy + Delta-G solvation = -24621.326287 eV Core-core repulsion = 21096.333974 eV Total energy + Delta-G solvation = -3524.992313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.77829 -38.97289 -38.33225 -36.92413 -35.66630 -35.07210 -32.63105 -31.62184 -31.29127 -28.78703 -28.00394 -27.44478 -25.04668 -23.49754 -22.84261 -22.32639 -21.89611 -21.13154 -20.66501 -19.36797 -18.38912 -17.30054 -17.06216 -16.80519 -16.33991 -15.75383 -15.68847 -15.53387 -15.11680 -15.06681 -14.95974 -14.50095 -14.44299 -13.94269 -13.79228 -13.69116 -13.48543 -13.33428 -13.19096 -12.98128 -12.85182 -12.66146 -12.52013 -12.49036 -12.36962 -12.27087 -11.98237 -11.80808 -11.75528 -11.45972 -11.43114 -11.37509 -11.22036 -11.14908 -11.10326 -10.67679 -10.06439 -9.57758 -9.39933 -8.78921 -6.48722 0.43327 1.14506 1.39049 1.42421 1.55818 2.12239 2.18293 2.41405 2.78656 3.68544 3.69679 3.95549 3.98408 4.06078 4.08501 4.21808 4.28464 4.31314 4.32293 4.44144 4.50769 4.60162 4.61317 4.76974 4.81000 4.82023 4.89683 4.91539 4.92845 4.99719 5.02933 5.04465 5.07481 5.14360 5.15220 5.15845 5.23217 5.29595 5.32009 5.38373 5.43041 5.48164 5.57166 5.59799 5.59930 5.61565 5.81932 5.94290 5.99279 6.22558 6.53894 6.71822 6.77157 6.88673 7.44119 8.16679 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.001631 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.262728 B =17161.977289 C =18236.987529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.148 4.148 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.120 4.120 9 C 0.121 3.879 10 N -0.726 5.726 11 C 0.568 3.432 12 O -0.609 6.609 13 C -0.295 4.295 14 C -0.053 4.053 15 C -0.196 4.196 16 C 0.101 3.899 17 C -0.474 4.474 18 H 0.085 0.915 19 C 0.038 3.962 20 N -0.800 5.800 21 Si 0.988 3.012 22 H -0.257 1.257 23 H -0.264 1.264 24 H -0.260 1.260 25 C -0.252 4.252 26 C -0.034 4.034 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.408 0.592 47 H 0.125 0.875 48 H 0.115 0.885 49 H 0.297 0.703 50 H 0.104 0.896 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.288 20.210 -10.712 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.205 4.205 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.158 4.158 9 C -0.003 4.003 10 N -0.378 5.378 11 C 0.362 3.638 12 O -0.494 6.494 13 C -0.299 4.299 14 C -0.072 4.072 15 C -0.215 4.215 16 C 0.097 3.903 17 C -0.501 4.501 18 H 0.103 0.897 19 C -0.181 4.181 20 N -0.423 5.423 21 Si 0.808 3.192 22 H -0.181 1.181 23 H -0.189 1.189 24 H -0.184 1.184 25 C -0.272 4.272 26 C -0.053 4.053 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.245 0.755 47 H 0.143 0.857 48 H 0.132 0.868 49 H 0.108 0.892 50 H 0.122 0.878 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.497 19.964 -11.305 23.208 hybrid contribution 0.436 -0.374 0.821 1.002 sum -3.061 19.590 -10.484 22.429 Atomic orbital electron populations 1.21894 0.95217 1.01858 1.01694 1.21140 0.96025 0.96322 0.98317 1.21849 1.00981 0.95858 1.01834 1.21638 1.00713 0.94960 0.97742 1.21633 1.01178 0.95062 0.97805 1.21554 1.01148 0.94099 0.98455 1.21477 1.01238 0.95486 0.96866 1.21749 1.02162 0.91791 1.00109 1.21389 0.98748 0.93145 0.86980 1.45814 1.58547 1.08843 1.24601 1.18447 0.77823 0.82039 0.85495 1.90609 1.44763 1.67573 1.46428 1.19218 1.16187 0.95382 0.99151 1.20734 0.94917 0.98496 0.93094 1.21009 1.06280 0.94576 0.99642 1.18161 0.88260 0.92467 0.91373 1.20138 1.10955 1.10777 1.08238 0.89714 1.26919 0.94043 0.93281 1.03835 1.69762 1.10476 1.23203 1.38885 0.85061 0.79139 0.79469 0.75565 1.18077 1.18862 1.18395 1.20864 1.10698 0.98955 0.96635 1.20516 0.95349 0.93539 0.95915 0.92672 0.92519 0.92805 0.91556 0.92673 0.92519 0.92730 0.92111 0.92112 0.92221 0.91774 0.91777 0.91866 0.91808 0.91687 0.90504 0.90652 0.92970 0.92798 0.75483 0.85721 0.86754 0.89178 0.87784 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.95 71.98 0.64 -0.96 16 2 C -0.10 -1.10 2.92 -10.80 -0.03 -1.13 16 3 C -0.15 -1.49 9.19 71.98 0.66 -0.83 16 4 C -0.11 -1.30 4.68 30.59 0.14 -1.16 16 5 C -0.12 -1.47 4.97 30.59 0.15 -1.31 16 6 C -0.11 -1.52 5.21 30.59 0.16 -1.36 16 7 C -0.11 -1.75 5.21 30.59 0.16 -1.59 16 8 C -0.12 -2.20 5.33 30.59 0.16 -2.04 16 9 C 0.12 3.23 5.67 86.38 0.49 3.72 16 10 N -0.73 -23.62 5.50 -466.18 -2.57 -26.19 16 11 C 0.57 24.47 7.76 86.73 0.67 25.15 16 12 O -0.61 -29.85 16.32 -4.00 -0.07 -29.91 16 13 C -0.29 -13.66 5.89 -19.93 -0.12 -13.78 16 14 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 15 C -0.20 -9.67 8.63 22.47 0.19 -9.48 16 16 C 0.10 5.25 5.57 -21.28 -0.12 5.14 16 17 C -0.47 -24.00 9.05 23.46 0.21 -23.79 16 18 H 0.08 4.13 7.90 -2.91 -0.02 4.11 16 19 C 0.04 1.76 5.15 85.35 0.44 2.20 16 20 N -0.80 -38.12 10.95 21.87 0.24 -37.88 16 21 Si 0.99 34.69 29.59 68.60 2.03 36.72 16 22 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 23 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 24 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 25 C -0.25 -12.65 9.73 22.47 0.22 -12.43 16 26 C -0.03 -1.66 9.52 22.25 0.21 -1.45 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.62 6.57 -2.39 -0.02 0.61 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.80 6.57 -2.39 -0.02 0.78 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.41 11.35 6.47 -92.70 -0.60 10.75 16 47 H 0.13 4.42 6.37 -2.91 -0.02 4.40 16 48 H 0.11 5.70 6.18 -2.91 -0.02 5.69 16 49 H 0.30 12.50 8.29 -92.70 -0.77 11.73 16 50 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 51 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 Total: -1.00 -60.86 409.07 4.39 -56.47 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.28 Total: 38.01 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 4.47 Total: -37.22 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -2.33 Total: -64.07 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.07 Total: -29.91 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Total: -60.86 4.39 -56.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758279252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.599 kcal (2) G-P(sol) polarization free energy of solvation -60.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds