Wall clock time and date at job start Tue Mar 31 2020 12:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 C 1.52997 * 109.47202 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47202 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47204 * 179.97438 * 5 4 3 7 7 C 1.53009 * 109.46684 * 60.00062 * 6 5 4 8 8 C 1.52996 * 109.47318 * 300.00330 * 6 5 4 9 9 C 1.52999 * 109.47108 * 179.97438 * 6 5 4 10 10 N 1.46492 * 109.47134 * 180.02562 * 9 6 5 11 11 C 1.34777 * 120.00403 * 180.02562 * 10 9 6 12 12 O 1.21592 * 119.99740 * 0.02562 * 11 10 9 13 13 C 1.47639 * 120.00339 * 180.02562 * 11 10 9 14 14 C 1.40007 * 119.89573 * 0.24611 * 13 11 10 15 15 C 1.36318 * 120.10468 * 180.25591 * 14 13 11 16 16 C 1.40884 * 119.89177 * 359.47662 * 15 14 13 17 17 C 1.41116 * 120.10368 * 180.29746 * 16 15 14 18 18 H 1.07997 * 120.00134 * 154.53831 * 17 16 15 19 19 C 1.40227 * 119.99714 * 334.53632 * 17 16 15 20 20 N 1.30644 * 120.00033 * 343.04996 * 19 17 16 21 21 Si 1.86799 * 119.99848 * 163.05218 * 19 17 16 22 22 H 1.48501 * 109.47314 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47265 * 119.99809 * 21 19 17 24 24 H 1.48498 * 109.47305 * 239.99792 * 21 19 17 25 25 C 1.40889 * 119.79628 * 0.27580 * 16 15 14 26 26 C 1.36316 * 119.88883 * 359.97438 * 25 16 15 27 27 H 1.09005 * 109.47353 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47170 * 299.99657 * 1 2 3 29 29 H 1.08989 * 109.47515 * 60.00102 * 1 2 3 30 30 H 1.09003 * 109.46794 * 239.99679 * 2 1 3 31 31 H 1.09004 * 109.47077 * 120.00195 * 2 1 3 32 32 H 1.09000 * 109.46777 * 60.00103 * 3 2 1 33 33 H 1.08998 * 109.46585 * 300.00190 * 3 2 1 34 34 H 1.09003 * 109.47107 * 59.99488 * 4 3 2 35 35 H 1.09004 * 109.46766 * 300.00004 * 4 3 2 36 36 H 1.09000 * 109.46777 * 59.99720 * 5 4 3 37 37 H 1.09003 * 109.46932 * 300.00130 * 5 4 3 38 38 H 1.08998 * 109.46735 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.47369 * 299.99687 * 7 6 5 40 40 H 1.08995 * 109.47029 * 60.00368 * 7 6 5 41 41 H 1.09000 * 109.47011 * 300.00110 * 8 6 5 42 42 H 1.08999 * 109.47374 * 59.99921 * 8 6 5 43 43 H 1.08998 * 109.47228 * 179.97438 * 8 6 5 44 44 H 1.09000 * 109.46513 * 60.00323 * 9 6 5 45 45 H 1.08994 * 109.47508 * 300.00819 * 9 6 5 46 46 H 0.97005 * 120.00342 * 0.02562 * 10 9 6 47 47 H 1.08000 * 119.95276 * 0.03420 * 14 13 11 48 48 H 1.08007 * 120.05277 * 179.74755 * 15 14 13 49 49 H 0.97005 * 119.99903 * 179.97438 * 20 19 17 50 50 H 1.08002 * 120.05358 * 180.02562 * 25 16 15 51 51 H 1.08002 * 119.94674 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6100 2.8850 -0.0013 7 6 6.1199 2.1631 -1.2503 8 6 6.1200 2.1643 1.2482 9 6 6.1200 4.3275 -0.0026 10 7 7.5849 4.3275 -0.0032 11 6 8.2589 5.4946 -0.0038 12 8 7.6510 6.5477 -0.0034 13 6 9.7353 5.4946 -0.0050 14 6 10.4331 4.2809 -0.0107 15 6 11.7963 4.2759 -0.0066 16 6 12.5029 5.4947 -0.0077 17 6 13.9140 5.4947 -0.0098 18 1 14.4534 6.3391 -0.4127 19 6 14.6159 4.3983 0.5114 20 7 14.0063 3.5409 1.2861 21 14 16.4224 4.1638 0.0982 22 1 16.8736 5.2639 -0.7916 23 1 17.2224 4.1787 1.3492 24 1 16.6074 2.8621 -0.5921 25 6 11.7963 6.7136 -0.0072 26 6 10.4331 6.7085 -0.0062 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9562 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9336 0.9285 0.8892 36 1 3.7170 3.3990 0.8887 37 1 3.7163 3.3985 -0.8913 38 1 7.2099 2.1635 -1.2506 39 1 5.7566 1.1355 -1.2499 40 1 5.7566 2.6766 -2.1404 41 1 5.7567 2.6784 2.1380 42 1 5.7567 1.1366 1.2486 43 1 7.2100 2.1639 1.2479 44 1 5.7567 4.8420 0.8870 45 1 5.7566 4.8406 -0.8929 46 1 8.0700 3.4874 -0.0032 47 1 9.8906 3.3470 -0.0148 48 1 12.3337 3.3390 -0.0068 49 1 14.4918 2.7822 1.6463 50 1 12.3337 7.6504 -0.0085 51 1 9.8905 7.6424 -0.0054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759327219.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:31 Heat of formation + Delta-G solvation = -68.682712 kcal Electronic energy + Delta-G solvation = -25883.067129 eV Core-core repulsion = 22359.002198 eV Total energy + Delta-G solvation = -3524.064931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -39.51222 -38.21201 -36.99164 -35.69205 -33.85302 -33.29306 -30.90531 -30.03795 -29.43314 -27.36913 -27.02545 -26.48834 -25.21689 -22.59255 -21.63167 -21.21169 -20.86436 -19.59593 -18.70253 -17.52070 -16.85571 -16.06601 -15.64708 -15.24482 -15.02746 -14.73865 -14.35043 -14.15584 -13.97094 -13.58026 -13.47165 -13.44509 -13.19034 -13.04885 -12.72417 -12.48108 -12.13992 -12.03899 -11.93399 -11.85130 -11.77647 -11.44625 -11.34953 -11.31662 -11.27381 -11.19334 -10.94496 -10.84773 -10.63963 -10.54852 -10.50894 -10.39619 -10.02463 -9.55709 -9.35807 -8.93141 -8.51542 -7.71407 -7.52334 -7.02350 -4.59678 2.24533 2.90961 2.95312 3.00896 3.03990 3.74640 3.85153 3.90071 4.43707 4.57839 4.61114 4.64261 4.74944 4.80802 4.90299 5.03478 5.25428 5.28318 5.40347 5.43004 5.49522 5.57315 5.61735 5.61999 5.70164 5.73398 5.76423 5.77400 5.79796 5.91269 5.96731 5.98513 6.04174 6.06091 6.08339 6.10388 6.18530 6.32877 6.34408 6.35781 6.77426 6.83663 6.98105 7.09329 7.14242 7.44614 7.66458 7.80192 7.86849 8.08028 8.28633 8.40792 8.64002 8.75955 9.12452 9.89873 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022924 B = 0.002141 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.155947 B =13076.861233 C =14014.823218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.106 4.106 6 C -0.076 4.076 7 C -0.144 4.144 8 C -0.145 4.145 9 C 0.134 3.866 10 N -0.739 5.739 11 C 0.570 3.430 12 O -0.577 6.577 13 C -0.282 4.282 14 C -0.063 4.063 15 C -0.177 4.177 16 C 0.128 3.872 17 C -0.444 4.444 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.774 5.774 21 Si 0.913 3.087 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.269 1.269 25 C -0.238 4.238 26 C -0.023 4.023 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.396 0.604 47 H 0.087 0.913 48 H 0.120 0.880 49 H 0.285 0.715 50 H 0.098 0.902 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.303 -9.643 -1.654 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.160 4.160 5 C -0.144 4.144 6 C -0.076 4.076 7 C -0.202 4.202 8 C -0.202 4.202 9 C 0.010 3.990 10 N -0.393 5.393 11 C 0.365 3.635 12 O -0.460 6.460 13 C -0.287 4.287 14 C -0.082 4.082 15 C -0.196 4.196 16 C 0.125 3.875 17 C -0.471 4.471 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.397 5.397 21 Si 0.736 3.264 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.194 1.194 25 C -0.257 4.257 26 C -0.042 4.042 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.233 0.767 47 H 0.105 0.895 48 H 0.138 0.862 49 H 0.097 0.903 50 H 0.116 0.884 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.704 -9.117 -1.501 19.089 hybrid contribution 1.028 -0.636 -0.009 1.209 sum -15.676 -9.753 -1.509 18.524 Atomic orbital electron populations 1.21782 0.96085 1.01441 1.01760 1.21541 0.95687 0.97163 1.01925 1.21635 0.95726 0.96504 1.01983 1.21720 0.94894 0.96948 1.02404 1.21558 0.93542 0.96972 1.02280 1.20798 0.95595 0.94916 0.96321 1.21937 1.01302 1.00107 0.96810 1.21936 1.01347 1.00099 0.96800 1.21206 0.81204 0.95012 1.01574 1.45949 1.06070 1.09212 1.78034 1.18584 0.88194 0.82515 0.74242 1.90629 1.70815 1.31592 1.52926 1.18929 0.89992 0.94541 1.25224 1.20459 0.94850 0.94561 0.98374 1.20968 0.92363 0.98733 1.07528 1.17797 0.93319 0.91091 0.85319 1.19869 0.91670 1.02439 1.33160 0.89709 1.26091 1.01614 0.94494 0.92487 1.69749 1.38997 1.10584 1.20399 0.86173 0.81058 0.79616 0.79506 1.18072 1.19689 1.19423 1.20728 0.93192 0.97191 1.14621 1.20369 0.93837 0.95749 0.94268 0.92943 0.92817 0.92816 0.92141 0.92133 0.92119 0.92133 0.91656 0.91638 0.91763 0.91769 0.92428 0.92230 0.92501 0.92477 0.92235 0.92389 0.92217 0.92228 0.76733 0.89487 0.86226 0.90335 0.88389 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.86 5.21 -26.73 -0.14 -1.00 16 4 C -0.12 -0.94 4.51 -26.73 -0.12 -1.06 16 5 C -0.11 -0.94 4.27 -26.73 -0.11 -1.06 16 6 C -0.08 -0.80 0.56 -154.51 -0.09 -0.88 16 7 C -0.14 -1.47 7.95 37.16 0.30 -1.17 16 8 C -0.14 -1.50 7.95 37.16 0.30 -1.20 16 9 C 0.13 1.91 4.56 -4.05 -0.02 1.89 16 10 N -0.74 -12.46 4.91 -61.32 -0.30 -12.76 16 11 C 0.57 12.32 7.76 -12.42 -0.10 12.22 16 12 O -0.58 -14.03 16.32 5.29 0.09 -13.94 16 13 C -0.28 -6.53 5.89 -104.73 -0.62 -7.14 16 14 C -0.06 -1.41 9.47 -39.61 -0.38 -1.78 16 15 C -0.18 -4.34 8.63 -39.27 -0.34 -4.67 16 16 C 0.13 3.27 5.57 -106.80 -0.59 2.68 16 17 C -0.44 -11.07 9.05 -37.74 -0.34 -11.42 16 18 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 19 C 0.07 1.73 5.15 -17.31 -0.09 1.64 16 20 N -0.77 -18.57 10.95 55.56 0.61 -17.96 16 21 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 16 22 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 25 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 26 C -0.02 -0.55 9.52 -39.61 -0.38 -0.93 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 35 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.64 6.86 -51.93 -0.36 0.28 16 39 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 43 H 0.06 0.66 6.86 -51.93 -0.36 0.30 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.40 6.07 4.16 -40.82 -0.17 5.90 16 47 H 0.09 1.65 6.37 -52.49 -0.33 1.31 16 48 H 0.12 2.97 6.18 -52.48 -0.32 2.64 16 49 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 50 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 51 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 LS Contribution 398.61 15.07 6.01 6.01 Total: -1.00 -27.95 398.61 -10.27 -38.22 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -8.75 Total: 9.79 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.89 Total: -21.63 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.31 Total: -30.72 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -27.95 -10.27 -38.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759327219.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.465 kcal (2) G-P(sol) polarization free energy of solvation -27.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds