Wall clock time and date at job start Tue Mar 31 2020 12:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47287 * 2 1 4 4 C 1.53000 * 109.47096 * 240.00165 * 2 1 3 5 5 C 1.53002 * 109.47399 * 294.21352 * 4 2 1 6 6 C 1.53122 * 109.52324 * 294.01608 * 5 4 2 7 7 C 1.53035 * 109.27605 * 182.43582 * 6 5 4 8 8 N 1.46842 * 109.52392 * 59.18237 * 7 6 5 9 9 C 1.46903 * 111.00369 * 174.15856 * 8 7 6 10 10 C 1.50700 * 109.46842 * 294.20903 * 9 8 7 11 11 C 1.38296 * 119.92859 * 269.72198 * 10 9 8 12 12 C 1.38109 * 120.06695 * 179.72581 * 11 10 9 13 13 C 1.38872 * 119.92868 * 0.54889 * 12 11 10 14 14 O 1.35751 * 120.07214 * 179.74776 * 13 12 11 15 15 C 1.34822 * 117.00562 * 174.44501 * 14 13 12 16 16 H 1.07999 * 119.99881 * 5.07503 * 15 14 13 17 17 C 1.38661 * 120.00262 * 185.07731 * 15 14 13 18 18 N 1.31551 * 119.99532 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99889 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47251 * 90.00179 * 19 17 15 21 21 H 1.48503 * 109.46850 * 209.99604 * 19 17 15 22 22 H 1.48497 * 109.47321 * 329.99373 * 19 17 15 23 23 C 1.38886 * 119.86728 * 359.72708 * 13 12 11 24 24 C 1.38105 * 119.92435 * 359.97438 * 23 13 12 25 25 C 1.46845 * 111.19649 * 298.25280 * 8 7 6 26 26 C 1.53036 * 109.52445 * 61.74400 * 25 8 7 27 27 H 1.08998 * 109.47349 * 59.99824 * 1 2 3 28 28 H 1.09003 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47145 * 299.99618 * 1 2 3 30 30 H 1.08998 * 109.47349 * 120.00175 * 2 1 3 31 31 H 1.09003 * 109.46974 * 175.03788 * 3 2 1 32 32 H 1.08995 * 109.46910 * 295.03889 * 3 2 1 33 33 H 1.09000 * 109.46845 * 55.04057 * 3 2 1 34 34 H 1.08997 * 109.47378 * 54.21414 * 4 2 1 35 35 H 1.09005 * 109.47157 * 174.21351 * 4 2 1 36 36 H 1.09007 * 109.52180 * 54.20445 * 5 4 2 37 37 H 1.08996 * 109.49985 * 302.37757 * 6 5 4 38 38 H 1.09005 * 109.49980 * 62.49657 * 6 5 4 39 39 H 1.08994 * 109.46719 * 299.15961 * 7 6 5 40 40 H 1.08997 * 109.45223 * 179.19129 * 7 6 5 41 41 H 1.09000 * 109.47011 * 54.20372 * 9 8 7 42 42 H 1.08990 * 109.47424 * 174.20508 * 9 8 7 43 43 H 1.07998 * 119.96845 * 0.02562 * 11 10 9 44 44 H 1.07996 * 120.03104 * 180.27661 * 12 11 10 45 45 H 0.97009 * 119.99658 * 180.02562 * 18 17 15 46 46 H 1.07989 * 120.03859 * 179.97438 * 23 13 12 47 47 H 1.07999 * 119.96134 * 180.02562 * 24 23 13 48 48 H 1.08998 * 109.46565 * 301.72852 * 25 8 7 49 49 H 1.08999 * 109.46689 * 181.75932 * 25 8 7 50 50 H 1.09003 * 109.50605 * 180.87970 * 26 25 8 51 51 H 1.08997 * 109.50208 * 60.76176 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6522 -2.1996 -1.1788 6 6 2.3957 -2.8689 -0.0195 7 6 2.0508 -4.3596 0.0083 8 7 2.4381 -4.9769 -1.2666 9 6 2.2495 -6.4331 -1.2253 10 6 3.2028 -7.0349 -0.2252 11 6 4.4592 -7.4466 -0.6308 12 6 5.3371 -7.9933 0.2845 13 6 4.9530 -8.1399 1.6109 14 8 5.8118 -8.6815 2.5120 15 6 5.4207 -8.6895 3.8022 16 1 4.4298 -8.3524 4.0682 17 6 6.2908 -9.1305 4.7877 18 7 7.4976 -9.5416 4.4636 19 14 5.7486 -9.1422 6.5752 20 1 5.1201 -10.4495 6.8934 21 1 6.9291 -8.9342 7.4518 22 1 4.7658 -8.0522 6.8016 23 6 3.6884 -7.7307 2.0140 24 6 2.8173 -7.1791 1.0952 25 6 1.7018 -4.3825 -2.3896 26 6 2.0363 -2.8925 -2.4891 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.1264 1.4437 0.0889 32 1 1.7510 1.9300 -0.9311 33 1 1.6059 1.9813 0.8422 34 1 1.5945 -0.2707 -2.1362 35 1 3.1250 -0.6324 -1.3026 36 1 0.5770 -2.2871 -1.0220 37 1 3.4700 -2.7464 -0.1573 38 1 2.0938 -2.4079 0.9209 39 1 0.9783 -4.4816 0.1598 40 1 2.5898 -4.8418 0.8238 41 1 1.2244 -6.6585 -0.9313 42 1 2.4451 -6.8530 -2.2119 43 1 4.7559 -7.3361 -1.6633 44 1 6.3198 -8.3105 -0.0320 45 1 8.1062 -9.8505 5.1530 46 1 3.3867 -7.8437 3.0447 47 1 1.8340 -6.8603 1.4080 48 1 0.6310 -4.5043 -2.2269 49 1 1.9873 -4.8814 -3.3157 50 1 1.4776 -2.4483 -3.3130 51 1 3.1049 -2.7704 -2.6656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760923197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:58 Heat of formation + Delta-G solvation = -29.953613 kcal Electronic energy + Delta-G solvation = -26511.160657 eV Core-core repulsion = 22988.775146 eV Total energy + Delta-G solvation = -3522.385512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.66113 -38.83995 -37.17068 -36.08878 -33.39048 -32.22915 -30.89918 -30.08985 -29.84278 -27.43636 -27.26981 -25.49379 -24.26864 -23.27808 -22.10056 -21.78779 -20.27889 -20.08133 -19.51382 -17.94404 -16.90729 -16.00730 -15.53264 -15.12874 -14.94377 -14.60280 -14.54210 -14.31991 -13.99506 -13.88590 -13.79696 -13.50311 -13.34958 -12.97685 -12.65116 -12.61146 -12.53128 -12.36089 -12.23331 -11.94168 -11.76562 -11.58237 -11.29445 -11.23790 -11.19314 -11.14381 -10.87863 -10.74275 -10.65280 -10.59906 -10.42278 -10.40930 -10.08702 -10.06757 -9.30327 -8.81380 -8.18489 -8.09222 -7.13548 -6.43141 -4.01825 2.25703 2.32382 3.13289 3.14385 3.19177 3.97914 4.06014 4.45296 4.58984 4.65955 4.69423 4.84581 4.92475 5.05128 5.11897 5.16835 5.31710 5.32087 5.33820 5.37726 5.40087 5.46738 5.50159 5.53683 5.57733 5.59969 5.63159 5.73977 5.77329 5.79056 5.81917 5.84827 5.88580 5.93366 6.02415 6.03765 6.10502 6.11372 6.23891 6.24533 6.26091 6.43002 6.47243 6.74663 6.93974 7.06329 7.22266 7.25014 7.33390 7.44577 7.48195 7.86902 8.02090 9.02656 9.73729 10.75042 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.002681 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.086656 B =10442.447000 C =11719.964807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.090 4.090 6 C -0.111 4.111 7 C 0.053 3.947 8 N -0.531 5.531 9 C 0.113 3.887 10 C -0.177 4.177 11 C -0.053 4.053 12 C -0.194 4.194 13 C 0.155 3.845 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.234 4.234 24 C -0.066 4.066 25 C 0.056 3.944 26 C -0.110 4.110 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.024 0.976 40 H 0.086 0.914 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.270 0.730 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.026 0.974 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.509 16.157 -11.309 23.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.205 4.205 4 C -0.145 4.145 5 C -0.108 4.108 6 C -0.148 4.148 7 C -0.075 4.075 8 N -0.256 5.256 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.072 4.072 12 C -0.213 4.213 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.253 4.253 24 C -0.085 4.085 25 C -0.072 4.072 26 C -0.148 4.148 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.104 0.896 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.143 0.857 47 H 0.120 0.880 48 H 0.044 0.956 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.582 16.055 -11.286 23.312 hybrid contribution -1.180 -0.175 1.105 1.626 sum -13.762 15.880 -10.181 23.351 Atomic orbital electron populations 1.21884 0.95541 1.01749 1.01337 1.21175 0.95719 0.95989 0.99041 1.21842 1.00990 0.96182 1.01451 1.21667 1.00960 0.94554 0.97303 1.21271 0.99861 0.94217 0.95468 1.21673 1.01163 0.94312 0.97683 1.22144 0.97736 0.94822 0.92750 1.61968 1.56821 1.03784 1.03003 1.20776 0.95843 0.86451 0.98251 1.19066 0.96433 1.08225 0.94067 1.20446 0.92481 0.96321 0.97912 1.20215 1.00851 1.08864 0.91406 1.19393 0.89427 0.90693 0.90330 1.83977 1.40238 1.67310 1.16701 1.21310 1.00599 1.45310 0.79519 0.89147 1.25279 0.94930 0.96456 0.99864 1.70041 1.05882 1.39738 1.34173 0.85728 0.78314 0.78952 0.80529 1.19916 1.20258 1.19217 1.21112 0.95121 1.08592 1.00513 1.20582 0.97844 0.97509 0.92570 1.22058 0.95293 0.95267 0.94624 1.21621 1.02151 0.94211 0.96793 0.92979 0.92473 0.93039 0.90820 0.92723 0.92944 0.92912 0.92285 0.91859 0.91503 0.91081 0.91727 0.95754 0.89597 0.95227 0.90953 0.87130 0.86623 0.92057 0.85717 0.88041 0.95558 0.91082 0.92063 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.97 37.15 0.33 -0.77 16 2 C -0.10 -0.80 2.80 -90.62 -0.25 -1.06 16 3 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 4 C -0.11 -0.88 4.14 -26.73 -0.11 -0.99 16 5 C -0.09 -0.83 2.13 -90.50 -0.19 -1.03 16 6 C -0.11 -1.23 5.10 -26.65 -0.14 -1.37 16 7 C 0.05 0.69 5.15 -3.84 -0.02 0.67 16 8 N -0.53 -6.99 4.65 -236.13 -1.10 -8.08 16 9 C 0.11 1.58 5.12 -4.97 -0.03 1.55 16 10 C -0.18 -3.03 4.89 -104.58 -0.51 -3.54 16 11 C -0.05 -0.96 9.69 -39.61 -0.38 -1.35 16 12 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16 13 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 14 O -0.18 -5.15 9.76 0.07 0.00 -5.15 16 15 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 16 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 19 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.23 -5.11 9.17 -39.39 -0.36 -5.47 16 24 C -0.07 -1.21 7.86 -39.61 -0.31 -1.53 16 25 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 26 C -0.11 -1.04 5.38 -26.65 -0.14 -1.18 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.44 6.48 -51.93 -0.34 0.11 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.64 6.41 -51.93 -0.33 0.31 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.63 6.35 -51.93 -0.33 0.30 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.68 6.60 -51.93 -0.34 0.33 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 1.31 5.74 -51.93 -0.30 1.01 16 41 H 0.03 0.40 8.07 -51.93 -0.42 -0.02 16 42 H 0.07 0.93 7.93 -51.93 -0.41 0.51 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 44 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 46 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 47 H 0.10 1.62 7.95 -52.49 -0.42 1.21 16 48 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.07 0.71 8.02 -51.93 -0.42 0.30 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -29.74 392.14 -10.63 -40.37 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.93 Total: 3.05 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -2.25 Total: -26.97 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: -0.34 Total: -32.82 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.74 -10.63 -40.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760923197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.419 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds