Wall clock time and date at job start Tue Mar 31 2020 11:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53166 * 1 3 3 C 1.54194 * 107.72373 * 2 1 4 4 C 1.52685 * 109.59779 * 117.23376 * 2 1 3 5 5 N 1.46877 * 109.70267 * 71.11562 * 4 2 1 6 6 C 1.46908 * 110.97610 * 188.96139 * 5 4 2 7 7 C 1.50703 * 109.46616 * 169.99595 * 6 5 4 8 8 C 1.38298 * 119.93042 * 90.00289 * 7 6 5 9 9 C 1.38096 * 120.06798 * 179.97438 * 8 7 6 10 10 C 1.38878 * 119.93166 * 359.97438 * 9 8 7 11 11 O 1.35751 * 120.06632 * 179.97438 * 10 9 8 12 12 C 1.34825 * 117.00369 * 354.47748 * 11 10 9 13 13 H 1.07998 * 120.00313 * 5.06007 * 12 11 10 14 14 C 1.38655 * 120.00287 * 185.06530 * 12 11 10 15 15 N 1.31555 * 119.99917 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00297 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47342 * 89.99533 * 16 14 12 18 18 H 1.48495 * 109.46950 * 209.99897 * 16 14 12 19 19 H 1.48503 * 109.46719 * 329.99527 * 16 14 12 20 20 C 1.38873 * 119.86379 * 359.97438 * 10 9 8 21 21 C 1.38098 * 119.93065 * 0.02562 * 20 10 9 22 22 C 1.46874 * 109.48146 * 66.12394 * 5 4 2 23 23 C 1.52689 * 109.64968 * 293.77703 * 22 5 4 24 24 C 1.53158 * 109.59509 * 289.10523 * 23 22 5 25 25 C 1.54189 * 107.98782 * 172.00373 * 23 22 5 26 26 C 1.51974 * 110.94810 * 241.55441 * 2 1 3 27 27 H 1.09001 * 109.47185 * 302.76682 * 1 2 3 28 28 H 1.08995 * 109.47246 * 62.76887 * 1 2 3 29 29 H 1.09002 * 109.47389 * 182.76795 * 1 2 3 30 30 H 1.09003 * 109.47492 * 178.29298 * 3 2 1 31 31 H 1.09005 * 109.47019 * 298.28519 * 3 2 1 32 32 H 1.08995 * 109.47482 * 58.28471 * 3 2 1 33 33 H 1.09080 * 109.59746 * 311.06500 * 4 2 1 34 34 H 1.09074 * 109.60895 * 191.20464 * 4 2 1 35 35 H 1.09004 * 109.47283 * 50.00046 * 6 5 4 36 36 H 1.08995 * 109.47015 * 289.99428 * 6 5 4 37 37 H 1.08001 * 119.96195 * 0.02562 * 8 7 6 38 38 H 1.08003 * 120.03408 * 179.72170 * 9 8 7 39 39 H 0.96997 * 120.00240 * 180.02562 * 15 14 12 40 40 H 1.07998 * 120.03394 * 180.02562 * 20 10 9 41 41 H 1.08002 * 119.96899 * 180.02562 * 21 20 10 42 42 H 1.09067 * 109.36140 * 53.97369 * 22 5 4 43 43 H 1.09069 * 109.34980 * 173.57039 * 22 5 4 44 44 H 1.09006 * 109.47359 * 184.26612 * 24 23 22 45 45 H 1.08998 * 109.47194 * 304.26861 * 24 23 22 46 46 H 1.09001 * 109.46953 * 64.27343 * 24 23 22 47 47 H 1.08997 * 109.47412 * 298.41619 * 25 23 22 48 48 H 1.09003 * 109.47180 * 58.42090 * 25 23 22 49 49 H 1.09003 * 109.47279 * 178.41476 * 25 23 22 50 50 H 1.10135 * 108.74419 * 40.70333 * 26 2 1 51 51 H 1.10160 * 108.70343 * 156.03721 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5317 0.0000 0.0000 3 6 2.0011 1.4688 0.0000 4 6 2.0438 -0.6582 1.2789 5 7 1.7883 -2.1037 1.2285 6 6 2.0735 -2.7338 2.5246 7 6 1.5727 -4.1551 2.5131 8 6 2.4053 -5.1767 2.0940 9 6 1.9495 -6.4803 2.0828 10 6 0.6537 -6.7648 2.4935 11 8 0.2027 -8.0452 2.4832 12 6 1.0209 -8.9782 1.9562 13 1 2.0178 -8.7068 1.6418 14 6 0.5825 -10.2863 1.8177 15 7 -0.6317 -10.6172 2.2010 16 14 1.7164 -11.5792 1.0882 17 1 2.5008 -12.2194 2.1744 18 1 0.9072 -12.6093 0.3887 19 1 2.6424 -10.9366 0.1214 20 6 -0.1796 -5.7369 2.9149 21 6 0.2821 -4.4354 2.9238 22 6 2.5971 -2.7072 0.1613 23 6 2.1213 -2.1943 -1.1959 24 6 0.7505 -2.7955 -1.5205 25 6 3.1156 -2.6870 -2.2664 26 6 2.0750 -0.6760 -1.2479 27 1 -0.3633 0.5562 0.8641 28 1 -0.3633 0.4702 -0.9137 29 1 -0.3634 -1.0265 0.0496 30 1 3.0902 1.5022 0.0306 31 1 1.6478 1.9631 -0.9050 32 1 1.5971 1.9793 0.8741 33 1 1.5306 -0.2307 2.1413 34 1 3.1161 -0.4838 1.3763 35 1 1.5718 -2.1782 3.3169 36 1 3.1488 -2.7289 2.7021 37 1 3.4133 -4.9549 1.7759 38 1 2.5987 -7.2771 1.7511 39 1 -0.9383 -11.5323 2.1045 40 1 -1.1876 -5.9551 3.2352 41 1 -0.3654 -3.6355 3.2517 42 1 3.6445 -2.4402 0.3065 43 1 2.4938 -3.7923 0.1993 44 1 0.4469 -2.4887 -2.5214 45 1 0.8110 -3.8829 -1.4764 46 1 0.0180 -2.4426 -0.7946 47 1 4.1041 -2.2763 -2.0607 48 1 3.1629 -3.7758 -2.2448 49 1 2.7829 -2.3574 -3.2506 50 1 1.4631 -0.3701 -2.1111 51 1 3.0918 -0.2982 -1.4401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767919709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:47 Heat of formation + Delta-G solvation = -20.102161 kcal Electronic energy + Delta-G solvation = -27648.948991 eV Core-core repulsion = 24126.990670 eV Total energy + Delta-G solvation = -3521.958321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.15789 -38.91284 -36.82072 -34.99221 -34.74174 -32.26551 -30.16053 -29.83129 -27.77159 -26.74569 -26.67593 -26.38780 -26.02176 -24.99292 -22.26540 -21.91038 -20.28220 -19.84347 -17.98353 -17.93855 -16.90125 -15.80040 -15.40018 -15.07063 -14.57776 -14.51110 -14.41097 -14.36554 -14.02352 -13.68421 -13.52801 -13.37825 -13.29321 -12.67901 -12.62932 -12.56880 -12.19914 -12.08718 -12.06366 -11.85389 -11.69989 -11.63092 -11.54416 -11.36080 -11.21349 -10.94731 -10.76491 -10.69886 -10.59417 -10.56249 -10.41105 -10.40162 -10.09909 -9.97454 -9.29982 -8.81195 -8.17881 -8.09357 -7.12963 -6.42939 -4.01662 2.26201 2.33119 3.13295 3.14389 3.19125 3.97930 4.04013 4.49122 4.64478 4.72949 4.76963 4.92989 5.08299 5.11895 5.17069 5.30602 5.32524 5.34828 5.41009 5.46217 5.52553 5.58891 5.62193 5.63983 5.69287 5.75768 5.77798 5.82364 5.83358 5.85490 5.89939 5.92225 6.01871 6.02605 6.09119 6.11280 6.22281 6.25583 6.27470 6.39506 6.45329 6.47794 6.71625 6.75141 6.94383 7.05966 7.22015 7.24555 7.33388 7.45083 7.48485 7.87370 8.02304 9.02908 9.74066 10.75272 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.003091 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.247543 B = 9054.973009 C = 9667.015751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C -0.145 4.145 4 C 0.063 3.937 5 N -0.518 5.518 6 C 0.111 3.889 7 C -0.174 4.174 8 C -0.066 4.066 9 C -0.234 4.234 10 C 0.156 3.844 11 O -0.179 6.179 12 C -0.391 4.391 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.939 3.061 17 H -0.274 1.274 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.194 4.194 21 C -0.052 4.052 22 C 0.060 3.940 23 C -0.052 4.052 24 C -0.136 4.136 25 C -0.146 4.146 26 C -0.091 4.091 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.269 0.731 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.025 0.975 43 H 0.087 0.913 44 H 0.043 0.957 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.053 0.947 50 H 0.058 0.942 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 20.452 -5.405 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.053 4.053 3 C -0.202 4.202 4 C -0.066 4.066 5 N -0.241 5.241 6 C -0.016 4.016 7 C -0.175 4.175 8 C -0.085 4.085 9 C -0.253 4.253 10 C 0.102 3.898 11 O -0.083 6.083 12 C -0.467 4.467 13 H 0.108 0.892 14 C -0.165 4.165 15 N -0.499 5.499 16 Si 0.764 3.236 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.213 4.213 21 C -0.071 4.071 22 C -0.068 4.068 23 C -0.053 4.053 24 C -0.193 4.193 25 C -0.204 4.204 26 C -0.129 4.129 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.119 0.881 38 H 0.142 0.858 39 H 0.079 0.921 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.043 0.957 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.392 20.058 -5.428 21.468 hybrid contribution 1.577 -0.542 -0.249 1.686 sum 6.969 19.517 -5.677 21.487 Atomic orbital electron populations 1.21957 0.93948 1.03056 1.00458 1.20390 0.96400 0.94032 0.94490 1.22208 1.00655 0.95751 1.01625 1.22143 0.98045 0.88962 0.97402 1.62469 1.55144 1.01982 1.04526 1.20815 0.97594 0.92706 0.90451 1.19043 0.95556 0.93234 1.09703 1.20569 0.97832 0.92348 0.97752 1.21103 0.97070 0.96874 1.10284 1.19382 0.91875 0.85993 0.92540 1.83978 1.43142 1.11508 1.69643 1.21303 0.96515 0.87777 1.41112 0.89164 1.25271 0.96798 0.97290 0.97142 1.70036 1.16387 1.19398 1.44038 0.85736 0.79085 0.79734 0.79024 1.19919 1.20259 1.19223 1.20207 0.99930 0.91272 1.09915 1.20431 0.94368 0.94814 0.97487 1.22239 0.93486 1.00729 0.90322 1.20382 0.96272 0.94287 0.94313 1.21929 0.96263 1.00672 1.00418 1.22208 0.98365 1.01455 0.98334 1.21374 1.00516 0.94134 0.96843 0.93309 0.93575 0.90708 0.93098 0.92704 0.92704 0.91122 0.95430 0.90941 0.95211 0.88096 0.85778 0.92063 0.86683 0.87174 0.95695 0.89521 0.93819 0.92728 0.91088 0.93211 0.92353 0.92757 0.92376 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.07 37.24 0.30 -1.05 16 2 C -0.05 -0.50 0.76 -154.48 -0.12 -0.62 16 3 C -0.14 -1.15 8.12 37.78 0.31 -0.85 16 4 C 0.06 0.67 4.05 -4.00 -0.02 0.65 16 5 N -0.52 -6.53 4.24 -236.37 -1.00 -7.54 16 6 C 0.11 1.50 5.10 -4.97 -0.03 1.48 16 7 C -0.17 -2.92 4.96 -104.57 -0.52 -3.44 16 8 C -0.07 -1.20 7.92 -39.61 -0.31 -1.51 16 9 C -0.23 -5.06 9.17 -39.40 -0.36 -5.42 16 10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 11 O -0.18 -5.14 9.76 0.06 0.00 -5.14 16 12 C -0.39 -10.96 9.49 30.89 0.29 -10.67 16 13 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 14 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 15 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 16 Si 0.94 20.62 29.55 -169.99 -5.02 15.59 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 20 C -0.19 -4.11 9.99 -39.40 -0.39 -4.51 16 21 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 22 C 0.06 0.77 3.85 -4.00 -0.02 0.75 16 23 C -0.05 -0.59 0.76 -154.48 -0.12 -0.70 16 24 C -0.14 -1.68 8.11 37.24 0.30 -1.38 16 25 C -0.15 -1.51 8.15 37.78 0.31 -1.20 16 26 C -0.09 -0.90 3.63 -27.77 -0.10 -1.00 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.07 0.87 5.42 -51.93 -0.28 0.59 16 30 H 0.05 0.40 8.10 -51.93 -0.42 -0.03 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.72 7.91 -51.88 -0.41 0.31 16 34 H 0.03 0.29 7.96 -51.89 -0.41 -0.12 16 35 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 36 H 0.03 0.39 8.04 -51.93 -0.42 -0.03 16 37 H 0.10 1.60 7.84 -52.49 -0.41 1.19 16 38 H 0.12 2.71 5.64 -52.48 -0.30 2.42 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.02 0.31 7.96 -51.89 -0.41 -0.10 16 43 H 0.09 1.29 5.51 -51.89 -0.29 1.01 16 44 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 46 H 0.07 0.94 5.39 -51.93 -0.28 0.66 16 47 H 0.05 0.48 8.06 -51.93 -0.42 0.06 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.06 0.56 7.90 -51.28 -0.41 0.15 16 51 H 0.05 0.49 7.60 -51.27 -0.39 0.10 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -29.33 388.39 -9.51 -38.84 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.88 Total: 3.42 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -1.21 Total: -26.31 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: -0.24 Total: -32.25 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: 0.00 Total: -5.14 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.33 -9.51 -38.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767919709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.734 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds