Wall clock time and date at job start Tue Mar 31 2020 11:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53166 * 1 3 3 C 1.54194 * 107.72373 * 2 1 4 4 C 1.52685 * 109.59779 * 117.23376 * 2 1 3 5 5 N 1.46877 * 109.70267 * 71.11562 * 4 2 1 6 6 C 1.46908 * 110.97610 * 188.96139 * 5 4 2 7 7 C 1.50703 * 109.46616 * 169.99595 * 6 5 4 8 8 C 1.38298 * 119.93042 * 90.00289 * 7 6 5 9 9 C 1.38096 * 120.06798 * 179.97438 * 8 7 6 10 10 C 1.38878 * 119.93166 * 359.97438 * 9 8 7 11 11 O 1.35751 * 120.06632 * 179.97438 * 10 9 8 12 12 C 1.34825 * 117.00369 * 354.47748 * 11 10 9 13 13 H 1.07998 * 120.00313 * 5.06007 * 12 11 10 14 14 C 1.38655 * 120.00287 * 185.06530 * 12 11 10 15 15 N 1.31555 * 119.99917 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00297 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47342 * 89.99533 * 16 14 12 18 18 H 1.48495 * 109.46950 * 209.99897 * 16 14 12 19 19 H 1.48503 * 109.46719 * 329.99527 * 16 14 12 20 20 C 1.38873 * 119.86379 * 359.97438 * 10 9 8 21 21 C 1.38098 * 119.93065 * 0.02562 * 20 10 9 22 22 C 1.46874 * 109.48146 * 66.12394 * 5 4 2 23 23 C 1.52689 * 109.64968 * 293.77703 * 22 5 4 24 24 C 1.53158 * 109.59509 * 289.10523 * 23 22 5 25 25 C 1.54189 * 107.98782 * 172.00373 * 23 22 5 26 26 C 1.51974 * 110.94810 * 241.55441 * 2 1 3 27 27 H 1.09001 * 109.47185 * 302.76682 * 1 2 3 28 28 H 1.08995 * 109.47246 * 62.76887 * 1 2 3 29 29 H 1.09002 * 109.47389 * 182.76795 * 1 2 3 30 30 H 1.09003 * 109.47492 * 178.29298 * 3 2 1 31 31 H 1.09005 * 109.47019 * 298.28519 * 3 2 1 32 32 H 1.08995 * 109.47482 * 58.28471 * 3 2 1 33 33 H 1.09080 * 109.59746 * 311.06500 * 4 2 1 34 34 H 1.09074 * 109.60895 * 191.20464 * 4 2 1 35 35 H 1.09004 * 109.47283 * 50.00046 * 6 5 4 36 36 H 1.08995 * 109.47015 * 289.99428 * 6 5 4 37 37 H 1.08001 * 119.96195 * 0.02562 * 8 7 6 38 38 H 1.08003 * 120.03408 * 179.72170 * 9 8 7 39 39 H 0.96997 * 120.00240 * 180.02562 * 15 14 12 40 40 H 1.07998 * 120.03394 * 180.02562 * 20 10 9 41 41 H 1.08002 * 119.96899 * 180.02562 * 21 20 10 42 42 H 1.09067 * 109.36140 * 53.97369 * 22 5 4 43 43 H 1.09069 * 109.34980 * 173.57039 * 22 5 4 44 44 H 1.09006 * 109.47359 * 184.26612 * 24 23 22 45 45 H 1.08998 * 109.47194 * 304.26861 * 24 23 22 46 46 H 1.09001 * 109.46953 * 64.27343 * 24 23 22 47 47 H 1.08997 * 109.47412 * 298.41619 * 25 23 22 48 48 H 1.09003 * 109.47180 * 58.42090 * 25 23 22 49 49 H 1.09003 * 109.47279 * 178.41476 * 25 23 22 50 50 H 1.10135 * 108.74419 * 40.70333 * 26 2 1 51 51 H 1.10160 * 108.70343 * 156.03721 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5317 0.0000 0.0000 3 6 2.0011 1.4688 0.0000 4 6 2.0438 -0.6582 1.2789 5 7 1.7883 -2.1037 1.2285 6 6 2.0735 -2.7338 2.5246 7 6 1.5727 -4.1551 2.5131 8 6 2.4053 -5.1767 2.0940 9 6 1.9495 -6.4803 2.0828 10 6 0.6537 -6.7648 2.4935 11 8 0.2027 -8.0452 2.4832 12 6 1.0209 -8.9782 1.9562 13 1 2.0178 -8.7068 1.6418 14 6 0.5825 -10.2863 1.8177 15 7 -0.6317 -10.6172 2.2010 16 14 1.7164 -11.5792 1.0882 17 1 2.5008 -12.2194 2.1744 18 1 0.9072 -12.6093 0.3887 19 1 2.6424 -10.9366 0.1214 20 6 -0.1796 -5.7369 2.9149 21 6 0.2821 -4.4354 2.9238 22 6 2.5971 -2.7072 0.1613 23 6 2.1213 -2.1943 -1.1959 24 6 0.7505 -2.7955 -1.5205 25 6 3.1156 -2.6870 -2.2664 26 6 2.0750 -0.6760 -1.2479 27 1 -0.3633 0.5562 0.8641 28 1 -0.3633 0.4702 -0.9137 29 1 -0.3634 -1.0265 0.0496 30 1 3.0902 1.5022 0.0306 31 1 1.6478 1.9631 -0.9050 32 1 1.5971 1.9793 0.8741 33 1 1.5306 -0.2307 2.1413 34 1 3.1161 -0.4838 1.3763 35 1 1.5718 -2.1782 3.3169 36 1 3.1488 -2.7289 2.7021 37 1 3.4133 -4.9549 1.7759 38 1 2.5987 -7.2771 1.7511 39 1 -0.9383 -11.5323 2.1045 40 1 -1.1876 -5.9551 3.2352 41 1 -0.3654 -3.6355 3.2517 42 1 3.6445 -2.4402 0.3065 43 1 2.4938 -3.7923 0.1993 44 1 0.4469 -2.4887 -2.5214 45 1 0.8110 -3.8829 -1.4764 46 1 0.0180 -2.4426 -0.7946 47 1 4.1041 -2.2763 -2.0607 48 1 3.1629 -3.7758 -2.2448 49 1 2.7829 -2.3574 -3.2506 50 1 1.4631 -0.3701 -2.1111 51 1 3.0918 -0.2982 -1.4401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767919709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:46 Heat of formation + Delta-G solvation = -35.469155 kcal Electronic energy + Delta-G solvation = -27649.615353 eV Core-core repulsion = 24126.990670 eV Total energy + Delta-G solvation = -3522.624684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18748 -40.53333 -38.44611 -35.91134 -35.80839 -34.25798 -31.78984 -31.30154 -28.60234 -27.75232 -27.53495 -27.42205 -27.30980 -26.54798 -23.60876 -23.41326 -21.73126 -20.72674 -19.80927 -18.87035 -18.76409 -16.77834 -16.57173 -16.43305 -16.26191 -15.79976 -15.51668 -15.42562 -15.27680 -15.23991 -14.91282 -14.55066 -14.34576 -14.14351 -14.06382 -13.64335 -13.36785 -13.13013 -13.03157 -12.91035 -12.85177 -12.81369 -12.54008 -12.45693 -12.40335 -12.29450 -12.22457 -12.13884 -12.01907 -11.66533 -11.46535 -11.26307 -11.15395 -11.00680 -10.84083 -10.77824 -9.73029 -9.17154 -8.84186 -8.46635 -6.14548 0.62853 0.71406 1.33942 1.43287 1.51474 2.17587 2.76557 3.05692 3.35219 3.55181 3.68597 3.87932 3.91588 4.03283 4.07420 4.17693 4.23512 4.26970 4.33667 4.44194 4.48625 4.63499 4.67072 4.71627 4.75934 4.78062 4.82526 4.83449 4.87207 4.90367 4.95981 4.99513 5.01642 5.10826 5.11684 5.13321 5.16285 5.19490 5.21241 5.32831 5.34552 5.42961 5.43615 5.56581 5.59198 5.60819 5.73472 5.78201 5.84642 6.04025 6.22022 6.25175 6.33994 6.98258 7.80356 8.76863 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.003091 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.247543 B = 9054.973009 C = 9667.015751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 C -0.139 4.139 4 C 0.064 3.936 5 N -0.526 5.526 6 C 0.113 3.887 7 C -0.146 4.146 8 C -0.062 4.062 9 C -0.242 4.242 10 C 0.115 3.885 11 O -0.234 6.234 12 C -0.412 4.412 13 H 0.100 0.900 14 C -0.023 4.023 15 N -0.922 5.922 16 Si 1.017 2.983 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.254 1.254 20 C -0.205 4.205 21 C -0.046 4.046 22 C 0.061 3.939 23 C -0.050 4.050 24 C -0.132 4.132 25 C -0.144 4.144 26 C -0.089 4.089 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.272 0.728 40 H 0.110 0.890 41 H 0.144 0.856 42 H 0.033 0.967 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.044 0.956 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.389 23.904 -6.070 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 C -0.197 4.197 4 C -0.064 4.064 5 N -0.249 5.249 6 C -0.014 4.014 7 C -0.148 4.148 8 C -0.080 4.080 9 C -0.261 4.261 10 C 0.064 3.936 11 O -0.141 6.141 12 C -0.488 4.488 13 H 0.117 0.883 14 C -0.220 4.220 15 N -0.560 5.560 16 Si 0.836 3.164 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.177 1.177 20 C -0.224 4.224 21 C -0.065 4.065 22 C -0.067 4.067 23 C -0.050 4.050 24 C -0.189 4.189 25 C -0.201 4.201 26 C -0.127 4.127 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.111 0.889 36 H 0.061 0.939 37 H 0.147 0.853 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.162 0.838 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.550 23.579 -6.090 25.496 hybrid contribution 0.933 -1.236 -0.022 1.549 sum 8.483 22.342 -6.112 24.668 Atomic orbital electron populations 1.21921 0.94281 1.01863 1.01090 1.20397 0.96058 0.95062 0.93780 1.22150 1.00947 0.94335 1.02274 1.22213 0.98626 0.87210 0.98347 1.62409 1.55394 1.03372 1.03773 1.20837 0.98500 0.90328 0.91750 1.19543 0.94512 0.95155 1.05547 1.20860 0.99336 0.91012 0.96808 1.21177 0.96121 0.98369 1.10470 1.19902 0.93605 0.85417 0.94630 1.83939 1.44572 1.13266 1.72316 1.21787 0.97091 0.88483 1.41461 0.88314 1.26568 0.98610 0.99435 0.97417 1.70183 1.18898 1.20131 1.46799 0.84613 0.76934 0.76328 0.78508 1.18739 1.19536 1.17747 1.20449 0.99734 0.92241 1.10012 1.20803 0.95312 0.93993 0.96345 1.22194 0.94037 0.99195 0.91243 1.20366 0.95454 0.95424 0.93773 1.21890 0.97131 0.98999 1.00914 1.22187 0.98737 1.00642 0.98582 1.21347 1.01270 0.92725 0.97337 0.92734 0.92973 0.92723 0.92642 0.92131 0.92079 0.90213 0.94797 0.88925 0.93902 0.85278 0.86752 0.91870 0.87178 0.83825 0.94929 0.92138 0.92694 0.95276 0.91939 0.92135 0.93685 0.91799 0.91909 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.07 72.04 0.58 -1.69 16 2 C -0.05 -0.82 0.76 -52.16 -0.04 -0.86 16 3 C -0.14 -1.67 8.12 72.39 0.59 -1.08 16 4 C 0.06 1.10 4.05 86.20 0.35 1.45 16 5 N -0.53 -11.59 4.24 -901.75 -3.83 -15.41 16 6 C 0.11 2.61 5.10 85.56 0.44 3.05 16 7 C -0.15 -4.58 4.96 -19.83 -0.10 -4.68 16 8 C -0.06 -2.16 7.92 22.25 0.18 -1.98 16 9 C -0.24 -10.76 9.17 22.39 0.21 -10.56 16 10 C 0.11 5.83 6.65 22.58 0.15 5.98 16 11 O -0.23 -14.40 9.76 -22.71 -0.22 -14.63 16 12 C -0.41 -24.47 9.49 67.92 0.64 -23.82 16 13 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 14 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 15 N -0.92 -57.49 13.67 21.61 0.30 -57.19 16 16 Si 1.02 43.56 29.55 68.60 2.03 45.59 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 20 C -0.21 -8.95 9.99 22.39 0.22 -8.72 16 21 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16 22 C 0.06 1.42 3.85 86.20 0.33 1.75 16 23 C -0.05 -1.02 0.76 -52.16 -0.04 -1.06 16 24 C -0.13 -3.17 8.11 72.04 0.58 -2.59 16 25 C -0.14 -2.69 8.15 72.38 0.59 -2.10 16 26 C -0.09 -1.48 3.63 29.92 0.11 -1.37 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 29 H 0.05 1.16 5.42 -2.39 -0.01 1.14 16 30 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.26 7.91 -2.34 -0.02 1.25 16 34 H 0.03 0.57 7.96 -2.35 -0.02 0.55 16 35 H 0.09 1.86 7.88 -2.38 -0.02 1.84 16 36 H 0.04 0.93 8.04 -2.39 -0.02 0.91 16 37 H 0.13 3.79 7.84 -2.91 -0.02 3.77 16 38 H 0.11 5.21 5.64 -2.91 -0.02 5.20 16 39 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 42 H 0.03 0.71 7.96 -2.35 -0.02 0.69 16 43 H 0.06 1.71 5.51 -2.35 -0.01 1.70 16 44 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 46 H 0.06 1.60 5.39 -2.39 -0.01 1.59 16 47 H 0.06 1.00 8.06 -2.39 -0.02 0.98 16 48 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.06 1.01 7.90 -1.78 -0.01 0.99 16 51 H 0.06 0.93 7.60 -1.77 -0.01 0.91 16 Total: -1.00 -68.76 388.39 4.64 -64.12 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.89 Total: 28.03 kcal Atomic # 6 Polarization: -55.98 SS G_CDS: 5.47 Total: -50.51 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -3.53 Total: -72.60 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.22 Total: -14.63 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.76 4.64 -64.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767919709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.651 kcal (2) G-P(sol) polarization free energy of solvation -68.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds