Wall clock time and date at job start Tue Mar 31 2020 11:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35904 * 116.99628 * 180.02562 * 11 10 9 13 13 C 1.38758 * 120.05922 * 359.72826 * 12 11 10 14 14 C 1.38122 * 119.94483 * 179.73989 * 13 12 11 15 15 C 1.38286 * 120.05406 * 0.51239 * 14 13 12 16 16 C 1.38245 * 120.11304 * 359.76190 * 15 14 13 17 17 C 1.50704 * 119.97222 * 179.97438 * 16 15 14 18 18 N 1.46895 * 109.47120 * 270.02470 * 17 16 15 19 19 C 1.46774 * 111.00247 * 45.79764 * 18 17 16 20 20 C 1.52851 * 110.07734 * 168.47276 * 19 18 17 21 21 C 1.53237 * 109.38651 * 77.03156 * 20 19 18 22 22 C 1.53087 * 108.81900 * 285.44237 * 21 20 19 23 23 C 1.52888 * 109.34550 * 316.35738 * 22 21 20 24 24 C 1.52828 * 109.60604 * 112.57501 * 23 22 21 25 25 C 1.46991 * 110.99605 * 170.00095 * 18 17 16 26 26 C 1.38173 * 120.05607 * 359.97438 * 16 15 14 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 29 29 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 30 30 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 31 31 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 32 32 H 1.08003 * 120.02200 * 359.97438 * 13 12 11 33 33 H 1.07999 * 119.96810 * 180.25032 * 14 13 12 34 34 H 1.08003 * 119.94351 * 179.74087 * 15 14 13 35 35 H 1.09002 * 109.46581 * 30.02752 * 17 16 15 36 36 H 1.08999 * 109.46711 * 150.02339 * 17 16 15 37 37 H 1.09007 * 109.36765 * 288.65821 * 19 18 17 38 38 H 1.08999 * 109.37229 * 48.28471 * 19 18 17 39 39 H 1.09006 * 109.48195 * 317.06019 * 20 19 18 40 40 H 1.09000 * 109.49196 * 197.01074 * 20 19 18 41 41 H 1.09000 * 109.57929 * 165.63913 * 21 20 19 42 42 H 1.09005 * 109.68561 * 45.30997 * 21 20 19 43 43 H 1.08991 * 109.49505 * 196.39331 * 22 21 20 44 44 H 1.09003 * 109.51140 * 76.33061 * 22 21 20 45 45 H 1.09010 * 109.44321 * 352.53825 * 23 22 21 46 46 H 1.08998 * 109.45228 * 232.62114 * 23 22 21 47 47 H 1.09004 * 109.49060 * 164.00457 * 24 23 22 48 48 H 1.09005 * 109.50827 * 43.94621 * 24 23 22 49 49 H 1.09004 * 109.49360 * 242.56576 * 25 18 17 50 50 H 1.08998 * 109.49472 * 2.62635 * 25 18 17 51 51 H 1.07997 * 120.02733 * 179.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 8 1.5308 -4.8996 0.0020 12 6 2.2711 -6.0394 0.0024 13 6 3.6568 -5.9681 -0.0034 14 6 4.4068 -7.1279 0.0024 15 6 3.7778 -8.3595 0.0033 16 6 2.3973 -8.4332 0.0034 17 6 1.7152 -9.7770 0.0038 18 7 1.4940 -10.2143 -1.3810 19 6 2.6986 -10.0126 -2.1951 20 6 2.5497 -10.7267 -3.5383 21 6 1.6355 -9.9045 -4.4529 22 6 0.1887 -10.0659 -3.9792 23 6 -0.0766 -11.5360 -3.6536 24 6 -0.2979 -11.6963 -2.1499 25 6 1.0503 -11.6149 -1.4266 26 6 1.6425 -7.2759 0.0030 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8880 29 1 0.6247 -2.5564 0.8919 30 1 2.8714 -3.6047 -0.8890 31 1 2.8726 -3.6039 0.8910 32 1 4.1484 -5.0065 -0.0087 33 1 5.4854 -7.0729 0.0020 34 1 4.3661 -9.2652 0.0037 35 1 2.3441 -10.5035 0.5183 36 1 0.7569 -9.6978 0.5172 37 1 2.8444 -8.9461 -2.3668 38 1 3.5635 -10.4133 -1.6665 39 1 2.1133 -11.7128 -3.3794 40 1 3.5294 -10.8331 -4.0041 41 1 1.7263 -10.2632 -5.4782 42 1 1.9198 -8.8532 -4.4072 43 1 -0.4904 -9.7395 -4.7666 44 1 0.0283 -9.4610 -3.0867 45 1 0.7803 -12.1359 -3.9604 46 1 -0.9646 -11.8718 -4.1890 47 1 -0.7592 -12.6638 -1.9514 48 1 -0.9516 -10.9012 -1.7914 49 1 1.7874 -12.2128 -1.9626 50 1 0.9422 -11.9954 -0.4109 51 1 0.5641 -7.3340 0.0026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768143897.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:53 Heat of formation + Delta-G solvation = -33.053298 kcal Electronic energy + Delta-G solvation = -26737.125159 eV Core-core repulsion = 23214.605235 eV Total energy + Delta-G solvation = -3522.519924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27064 -40.30746 -38.57020 -35.99851 -35.44277 -33.73803 -32.63464 -32.41343 -30.62180 -29.16082 -27.08807 -27.00904 -26.00611 -23.73486 -23.30930 -22.91391 -22.16420 -21.38413 -19.91136 -19.12738 -18.16456 -17.12795 -17.01137 -16.95615 -16.87243 -16.55176 -16.41534 -15.87696 -15.18838 -15.03962 -14.66107 -14.55504 -14.36690 -14.34015 -14.24084 -14.16620 -13.67562 -13.23429 -13.05097 -12.95549 -12.68633 -12.60500 -12.55303 -12.47263 -12.26623 -12.21672 -11.84811 -11.73683 -11.64041 -11.58074 -11.56892 -11.39722 -11.29577 -11.09426 -10.85780 -10.63629 -9.83407 -9.12844 -8.95813 -8.27961 -6.42039 0.34467 0.52877 1.39764 1.42297 1.53434 2.26464 2.50730 2.71727 3.06345 3.21952 3.75503 3.89083 3.91439 4.03018 4.09204 4.14646 4.21693 4.24661 4.25537 4.27324 4.32497 4.38810 4.41029 4.52580 4.61946 4.65427 4.71521 4.72690 4.80964 4.84418 4.92678 4.98430 5.05727 5.08972 5.11147 5.13439 5.28812 5.29854 5.35045 5.41970 5.43821 5.44694 5.50769 5.51936 5.55831 5.61310 5.67610 5.77843 5.90106 6.06090 6.22502 6.31710 6.57197 6.72735 7.28210 8.85339 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.002439 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.997981 B =11479.596231 C =12036.929005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.029 3.971 10 C 0.086 3.914 11 O -0.343 6.343 12 C 0.106 3.894 13 C -0.223 4.223 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.042 4.042 17 C 0.101 3.899 18 N -0.538 5.538 19 C 0.060 3.940 20 C -0.136 4.136 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.110 4.110 25 C 0.045 3.955 26 C -0.152 4.152 27 H 0.267 0.733 28 H -0.003 1.003 29 H -0.002 1.002 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.041 0.959 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 -28.720 -4.432 29.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.008 4.008 10 C 0.012 3.988 11 O -0.258 6.258 12 C 0.061 3.939 13 C -0.242 4.242 14 C -0.095 4.095 15 C -0.170 4.170 16 C -0.042 4.042 17 C -0.026 4.026 18 N -0.263 5.263 19 C -0.067 4.067 20 C -0.173 4.173 21 C -0.149 4.149 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.148 4.148 25 C -0.082 4.082 26 C -0.172 4.172 27 H 0.076 0.924 28 H 0.015 0.985 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.092 0.908 50 H 0.085 0.915 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.620 -28.304 -4.626 29.434 hybrid contribution 0.580 1.221 0.311 1.387 sum 7.200 -27.084 -4.315 28.355 Atomic orbital electron populations 1.70121 1.08093 1.28276 1.50569 1.26058 0.95828 1.03736 0.94097 0.85276 0.78581 0.77458 0.78702 1.19500 1.20570 1.18269 1.21393 0.93809 0.90999 1.52232 0.91124 1.18958 0.94532 0.91441 0.95907 1.22836 0.95355 0.80290 1.00336 1.86088 1.37554 1.13824 1.88319 1.19524 0.91115 0.86810 0.96432 1.21474 0.92500 1.00923 1.09318 1.21185 1.00737 0.91151 0.96437 1.21175 0.93560 0.98208 1.04059 1.19670 0.93578 0.94024 0.96968 1.21168 0.99960 0.91321 0.90178 1.62148 1.33349 1.21644 1.09126 1.22149 0.90648 1.00090 0.93837 1.22190 1.00056 1.00535 0.94510 1.21571 0.95554 0.99098 0.98651 1.21623 0.95808 0.97616 1.00740 1.21681 1.01491 0.96069 0.96226 1.21672 0.96715 1.01393 0.94992 1.22476 0.97325 0.87726 1.00699 1.20369 1.00285 0.89426 1.07084 0.92397 0.98491 0.98364 0.92396 0.92251 0.85710 0.83257 0.83633 0.91859 0.89926 0.92902 0.94058 0.88534 0.91065 0.91992 0.94059 0.93904 0.91733 0.90588 0.92541 0.90767 0.92770 0.90816 0.91534 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.98 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.55 -31.42 9.11 25.60 0.23 -31.18 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.03 1.62 5.34 29.85 0.16 1.78 16 10 C 0.09 3.92 4.68 71.98 0.34 4.25 16 11 O -0.34 -15.29 10.14 -92.47 -0.94 -16.23 16 12 C 0.11 3.89 6.69 22.51 0.15 4.04 16 13 C -0.22 -6.98 9.04 22.37 0.20 -6.77 16 14 C -0.08 -1.83 10.04 22.25 0.22 -1.61 16 15 C -0.15 -3.19 8.08 22.28 0.18 -3.01 16 16 C -0.04 -1.00 4.18 -19.88 -0.08 -1.08 16 17 C 0.10 1.82 5.08 85.56 0.43 2.26 16 18 N -0.54 -9.42 3.12 -900.75 -2.81 -12.22 16 19 C 0.06 1.05 3.86 86.28 0.33 1.38 16 20 C -0.14 -1.99 5.32 30.62 0.16 -1.82 16 21 C -0.11 -1.99 5.77 30.70 0.18 -1.82 16 22 C -0.12 -2.28 5.50 30.59 0.17 -2.11 16 23 C -0.12 -1.67 5.46 30.50 0.17 -1.50 16 24 C -0.11 -1.50 5.69 30.61 0.17 -1.32 16 25 C 0.04 0.58 5.26 86.36 0.45 1.03 16 26 C -0.15 -4.79 9.64 22.37 0.22 -4.58 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 30 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 31 H 0.06 2.54 7.67 -2.39 -0.02 2.52 16 32 H 0.12 3.90 6.30 -2.91 -0.02 3.88 16 33 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.15 2.17 7.49 -2.91 -0.02 2.15 16 35 H 0.06 0.90 7.96 -2.39 -0.02 0.88 16 36 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 37 H 0.05 1.22 6.66 -2.38 -0.02 1.20 16 38 H 0.04 0.62 7.15 -2.39 -0.02 0.60 16 39 H 0.10 1.18 2.86 -2.38 -0.01 1.17 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.04 0.90 7.84 -2.38 -0.02 0.88 16 43 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.06 1.53 6.33 -2.39 -0.02 1.52 16 45 H 0.08 0.92 5.42 -2.38 -0.01 0.91 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 47 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.05 0.95 7.79 -2.38 -0.02 0.93 16 49 H 0.07 0.80 5.46 -2.38 -0.01 0.78 16 50 H 0.07 0.74 7.50 -2.39 -0.02 0.72 16 51 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -67.01 382.90 3.61 -63.40 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.89 Total: 17.82 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 4.15 Total: -41.53 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -2.52 Total: -69.45 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.94 Total: -16.23 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.01 3.61 -63.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768143897.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.349 kcal (2) G-P(sol) polarization free energy of solvation -67.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds