Wall clock time and date at job start Tue Mar 31 2020 11:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38230 * 120.00068 * 2 1 4 4 C 1.38236 * 119.99883 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99991 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00089 * 359.97438 * 4 3 2 7 7 C 1.38237 * 119.99843 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99763 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47238 * 89.99937 * 8 7 6 10 10 C 1.50696 * 109.47055 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00218 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00208 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00107 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47558 * 90.00061 * 13 12 10 15 15 H 1.08003 * 119.99337 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99989 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00371 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99524 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47044 * 60.00322 * 18 16 14 20 20 H 1.48506 * 109.46677 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47487 * 300.00037 * 18 16 14 22 22 C 1.46507 * 119.99730 * 0.02562 * 12 10 9 23 23 C 1.53000 * 109.46840 * 89.99999 * 22 12 10 24 24 C 1.53001 * 109.47052 * 65.00252 * 23 22 12 25 25 C 1.53004 * 109.46802 * 184.99878 * 23 22 12 26 26 C 1.38236 * 120.00188 * 0.24641 * 7 6 4 27 27 H 1.08991 * 109.47181 * 89.99887 * 1 2 3 28 28 H 1.09000 * 109.47228 * 210.00058 * 1 2 3 29 29 H 1.09002 * 109.46642 * 329.99546 * 1 2 3 30 30 H 1.07992 * 119.99956 * 0.02562 * 3 2 1 31 31 H 1.09006 * 109.46774 * 270.01537 * 5 4 3 32 32 H 1.08991 * 109.47483 * 30.01558 * 5 4 3 33 33 H 1.09000 * 109.47116 * 150.02175 * 5 4 3 34 34 H 1.07998 * 120.00589 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.46953 * 209.99549 * 8 7 6 36 36 H 1.09000 * 109.47318 * 329.99147 * 8 7 6 37 37 H 1.09001 * 109.46832 * 299.99686 * 9 8 7 38 38 H 1.09004 * 109.47261 * 59.99705 * 9 8 7 39 39 H 1.09001 * 109.47017 * 209.99969 * 13 12 10 40 40 H 1.08997 * 109.47346 * 329.99656 * 13 12 10 41 41 H 0.97003 * 120.00552 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.47007 * 210.00594 * 22 12 10 43 43 H 1.09001 * 109.47259 * 330.00063 * 22 12 10 44 44 H 1.08996 * 109.46921 * 304.99972 * 23 22 12 45 45 H 1.09000 * 109.47034 * 59.99481 * 24 23 22 46 46 H 1.08995 * 109.47001 * 179.97438 * 24 23 22 47 47 H 1.09002 * 109.46901 * 299.99536 * 24 23 22 48 48 H 1.08995 * 109.47111 * 60.00292 * 25 23 22 49 49 H 1.08995 * 109.46954 * 180.02562 * 25 23 22 50 50 H 1.08991 * 109.47135 * 300.00144 * 25 23 22 51 51 H 1.07997 * 120.00153 * 179.72710 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5021 -0.0011 6 6 4.2717 -0.0001 -0.0005 7 6 3.5805 -1.1973 -0.0005 8 6 4.3340 -2.5024 -0.0011 9 6 4.5896 -2.9444 1.4411 10 6 5.3425 -4.2498 1.4405 11 8 5.6454 -4.7747 0.3900 12 7 5.6803 -4.8335 2.6074 13 6 6.4128 -6.1022 2.6068 14 6 7.8944 -5.8270 2.6057 15 1 8.2544 -4.8088 2.6051 16 6 8.7902 -6.8751 2.6055 17 7 8.3518 -8.1149 2.6057 18 14 10.6268 -6.5338 2.6035 19 1 10.9868 -5.7544 3.8151 20 1 11.3692 -7.8200 2.6029 21 1 10.9845 -5.7559 1.3902 22 6 5.3150 -4.1992 3.8765 23 6 3.9386 -4.6996 4.3191 24 6 4.0137 -6.1974 4.6221 25 6 3.5023 -3.9460 5.5772 26 6 2.1981 -1.1972 -0.0057 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1323 0.0004 31 1 4.5151 2.8166 -1.0290 32 1 3.7455 3.2618 0.5130 33 1 5.2869 2.3718 0.5120 34 1 5.3517 -0.0002 -0.0014 35 1 3.7447 -3.2619 -0.5148 36 1 5.2862 -2.3720 -0.5154 37 1 5.1789 -2.1849 1.9549 38 1 3.6374 -3.0748 1.9554 39 1 6.1501 -6.6739 3.4969 40 1 6.1487 -6.6738 1.7170 41 1 8.9821 -8.8523 2.6052 42 1 6.0551 -4.4524 4.6356 43 1 5.2837 -3.1174 3.7463 44 1 3.2154 -4.5259 3.5223 45 1 4.7370 -6.3711 5.4189 46 1 3.0332 -6.5538 4.9379 47 1 4.3245 -6.7343 3.7259 48 1 3.4488 -2.8790 5.3613 49 1 2.5219 -4.3028 5.8928 50 1 4.2255 -4.1197 6.3739 51 1 1.6581 -2.1325 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771345764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:32 Heat of formation + Delta-G solvation = -65.857965 kcal Electronic energy + Delta-G solvation = -26773.309998 eV Core-core repulsion = 23249.367557 eV Total energy + Delta-G solvation = -3523.942441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02956 -40.34065 -37.84077 -35.64346 -35.15850 -34.33837 -34.11065 -31.57425 -29.59179 -28.10970 -27.97026 -27.51220 -26.92028 -26.05706 -24.05859 -21.57474 -21.49857 -21.14756 -19.80423 -18.66921 -17.81194 -17.26786 -17.10370 -16.90802 -16.33699 -16.11408 -15.62035 -15.18936 -15.03711 -14.89443 -14.45997 -14.29608 -13.97620 -13.95163 -13.78866 -13.72961 -13.64076 -13.41567 -13.28761 -13.26997 -13.02864 -12.96049 -12.76824 -12.65559 -12.56869 -12.16715 -12.13841 -12.12847 -12.06586 -11.82650 -11.76334 -11.74242 -11.51303 -11.50193 -10.62327 -10.58508 -9.46111 -9.41106 -9.36932 -8.21577 -6.36321 0.46186 0.49217 1.34758 1.39220 1.46352 1.85404 2.30953 2.46090 2.83531 3.07336 3.58741 3.86339 3.91883 3.97523 4.00738 4.04423 4.16918 4.21121 4.28194 4.31345 4.50312 4.53690 4.57703 4.67038 4.70219 4.73009 4.78398 4.83995 4.84357 4.84477 4.88893 4.93381 5.05505 5.06750 5.08592 5.09697 5.14073 5.15651 5.24366 5.30199 5.33361 5.41362 5.45376 5.50320 5.60391 5.69976 5.70479 5.79468 5.89292 6.09604 6.18702 6.71025 6.82690 7.28929 7.51166 8.84810 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.003203 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.522712 B = 8739.751277 C = 9837.398324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.133 4.133 4 C -0.087 4.087 5 C -0.113 4.113 6 C -0.139 4.139 7 C -0.075 4.075 8 C -0.059 4.059 9 C -0.113 4.113 10 C 0.493 3.507 11 O -0.600 6.600 12 N -0.599 5.599 13 C 0.262 3.738 14 C -0.545 4.545 15 H 0.051 0.949 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.965 3.035 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.111 3.889 23 C -0.106 4.106 24 C -0.147 4.147 25 C -0.135 4.135 26 C -0.135 4.135 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.035 0.965 40 H -0.010 1.010 41 H 0.267 0.733 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.067 0.933 47 H 0.028 0.972 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.056 0.944 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.053 20.931 1.917 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.087 4.087 5 C -0.169 4.169 6 C -0.157 4.157 7 C -0.075 4.075 8 C -0.096 4.096 9 C -0.153 4.153 10 C 0.283 3.717 11 O -0.482 6.482 12 N -0.329 5.329 13 C 0.140 3.860 14 C -0.584 4.584 15 H 0.069 0.931 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.789 3.211 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.204 1.204 22 C -0.012 4.012 23 C -0.126 4.126 24 C -0.204 4.204 25 C -0.193 4.193 26 C -0.153 4.153 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.158 0.842 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.053 0.947 40 H 0.008 0.992 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.047 0.953 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.830 20.459 1.416 25.907 hybrid contribution 1.403 -0.893 -0.321 1.694 sum -14.427 19.566 1.096 24.334 Atomic orbital electron populations 1.20828 0.89444 1.03637 1.02966 1.20196 0.97357 0.92693 0.98376 1.21167 0.93453 0.98254 1.02172 1.20182 0.94365 0.95669 0.98481 1.20828 1.00000 0.93169 1.02940 1.21078 1.00018 0.91859 1.02720 1.19786 0.94067 0.94144 0.99537 1.20204 0.99872 0.94051 0.95518 1.21615 1.01547 0.93112 0.99003 1.21396 0.79603 0.87625 0.83092 1.90629 1.57611 1.67001 1.32942 1.48222 1.54440 1.23879 1.06330 1.18806 0.90042 0.81392 0.95735 1.21739 0.92679 0.92804 1.51155 0.93075 1.25834 1.04088 0.94644 0.94511 1.70041 1.36527 0.99128 1.51093 0.85513 0.78930 0.77680 0.78964 1.18418 1.20307 1.20417 1.21846 0.96528 0.97947 0.84876 1.21527 0.96162 0.95529 0.99364 1.21893 1.01599 0.96380 1.00569 1.21720 1.01629 1.00327 0.95630 1.21075 0.93255 0.98481 1.02525 0.90565 0.91109 0.90223 0.84186 0.90582 0.90140 0.91340 0.86183 0.91651 0.92153 0.87591 0.87043 0.94728 0.99237 0.92455 0.91248 0.88511 0.91095 0.93222 0.91395 0.95267 0.91005 0.91413 0.92449 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.24 0.71 -0.69 16 2 C -0.09 -1.58 5.88 -19.86 -0.12 -1.70 16 3 C -0.13 -2.31 9.36 22.27 0.21 -2.10 16 4 C -0.09 -1.66 5.88 -19.87 -0.12 -1.77 16 5 C -0.11 -1.53 10.01 71.24 0.71 -0.81 16 6 C -0.14 -3.16 9.36 22.27 0.21 -2.95 16 7 C -0.08 -1.85 5.13 -19.86 -0.10 -1.95 16 8 C -0.06 -1.72 4.63 29.85 0.14 -1.59 16 9 C -0.11 -3.33 4.23 29.85 0.13 -3.21 16 10 C 0.49 21.12 7.67 87.66 0.67 21.79 16 11 O -0.60 -32.12 15.56 -3.03 -0.05 -32.17 16 12 N -0.60 -25.90 2.28 -826.15 -1.88 -27.79 16 13 C 0.26 14.37 4.23 85.63 0.36 14.73 16 14 C -0.55 -32.17 9.39 25.60 0.24 -31.93 16 15 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 16 C 0.01 0.48 5.46 84.66 0.46 0.94 16 17 N -0.93 -57.17 13.29 21.44 0.28 -56.89 16 18 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 C 0.11 3.51 4.70 86.38 0.41 3.92 16 23 C -0.11 -2.79 3.12 -10.79 -0.03 -2.82 16 24 C -0.15 -4.54 8.18 71.98 0.59 -3.96 16 25 C -0.14 -2.53 9.19 71.98 0.66 -1.86 16 26 C -0.14 -2.96 9.36 22.27 0.21 -2.75 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 29 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 33 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 34 H 0.12 2.66 8.06 -2.91 -0.02 2.63 16 35 H 0.06 2.06 8.04 -2.39 -0.02 2.04 16 36 H 0.06 1.98 8.04 -2.39 -0.02 1.96 16 37 H 0.11 2.73 7.40 -2.39 -0.02 2.72 16 38 H 0.11 2.72 7.26 -2.38 -0.02 2.71 16 39 H 0.03 1.91 5.98 -2.39 -0.01 1.90 16 40 H -0.01 -0.67 7.42 -2.39 -0.02 -0.69 16 41 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 43 H 0.10 2.45 6.44 -2.39 -0.02 2.44 16 44 H 0.07 1.81 7.30 -2.39 -0.02 1.79 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.03 1.11 5.89 -2.39 -0.01 1.10 16 48 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -75.42 409.28 6.59 -68.83 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.87 Total: 18.94 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 5.34 Total: -18.71 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -1.60 Total: -84.67 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.05 Total: -32.17 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -75.42 6.59 -68.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771345764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.972 kcal (2) G-P(sol) polarization free energy of solvation -75.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds