Wall clock time and date at job start Tue Mar 31 2020 11:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47386 * 2 1 4 4 C 1.52995 * 109.47183 * 300.00271 * 3 2 1 5 5 C 1.53002 * 109.47064 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.46801 * 300.00095 * 5 3 2 7 7 C 1.53000 * 109.47376 * 300.00048 * 6 5 3 8 8 N 1.46894 * 109.47253 * 180.02562 * 7 6 5 9 9 C 1.46898 * 111.00061 * 155.00076 * 8 7 6 10 10 C 1.50699 * 109.47073 * 179.97438 * 9 8 7 11 11 C 1.38303 * 119.93178 * 269.72378 * 10 9 8 12 12 C 1.38102 * 120.07016 * 179.72113 * 11 10 9 13 13 C 1.38879 * 119.93059 * 0.57851 * 12 11 10 14 14 O 1.35744 * 120.07041 * 179.67768 * 13 12 11 15 15 C 1.34829 * 117.00210 * 174.48132 * 14 13 12 16 16 H 1.08001 * 120.00035 * 5.06208 * 15 14 13 17 17 C 1.38651 * 120.00042 * 185.05551 * 15 14 13 18 18 N 1.31556 * 120.00335 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99924 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46792 * 90.00420 * 19 17 15 21 21 H 1.48494 * 109.46986 * 210.00385 * 19 17 15 22 22 H 1.48501 * 109.47069 * 330.00565 * 19 17 15 23 23 C 1.38881 * 119.85801 * 359.69538 * 13 12 11 24 24 C 1.38099 * 119.93237 * 0.02562 * 23 13 12 25 25 C 1.53005 * 109.47014 * 59.99871 * 7 6 5 26 26 C 1.52994 * 109.47157 * 300.00260 * 25 7 6 27 27 H 1.09005 * 109.46902 * 300.00124 * 1 2 3 28 28 H 1.09000 * 109.46989 * 59.99275 * 1 2 3 29 29 H 1.08991 * 109.47498 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46902 * 239.99875 * 2 1 3 31 31 H 1.09000 * 109.46989 * 120.00725 * 2 1 3 32 32 H 1.09000 * 109.47535 * 299.99742 * 4 3 2 33 33 H 1.08998 * 109.47678 * 60.00005 * 4 3 2 34 34 H 1.09007 * 109.47187 * 180.02562 * 4 3 2 35 35 H 1.08999 * 109.46992 * 180.02562 * 5 3 2 36 36 H 1.08993 * 109.46897 * 59.99968 * 5 3 2 37 37 H 1.09004 * 109.46633 * 180.02562 * 6 5 3 38 38 H 1.08999 * 109.46997 * 60.00433 * 6 5 3 39 39 H 1.09007 * 109.46791 * 300.00285 * 7 6 5 40 40 H 1.00906 * 110.99471 * 278.95124 * 8 7 6 41 41 H 1.08994 * 109.46980 * 299.99646 * 9 8 7 42 42 H 1.08997 * 109.47138 * 59.99947 * 9 8 7 43 43 H 1.08001 * 119.96427 * 359.97438 * 11 10 9 44 44 H 1.07999 * 120.03168 * 180.27326 * 12 11 10 45 45 H 0.96995 * 120.00392 * 180.02562 * 18 17 15 46 46 H 1.08000 * 120.02763 * 179.97438 * 23 13 12 47 47 H 1.07998 * 119.96282 * 179.97438 * 24 23 13 48 48 H 1.09002 * 109.46575 * 60.00405 * 25 7 6 49 49 H 1.08996 * 109.46469 * 179.97438 * 25 7 6 50 50 H 1.09002 * 109.47496 * 299.99581 * 26 25 7 51 51 H 1.09004 * 109.46635 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 3.5701 1.4424 -0.0006 6 6 4.0805 0.7208 1.2483 7 6 3.5711 1.4419 2.4979 8 7 4.0616 0.7495 3.6970 9 6 4.1248 1.6645 4.8444 10 6 4.6306 0.9202 6.0532 11 6 3.7362 0.2948 6.9027 12 6 4.1969 -0.3930 8.0081 13 6 5.5592 -0.4461 8.2729 14 8 6.0147 -1.1158 9.3623 15 6 7.3516 -1.2255 9.4985 16 1 8.0083 -0.7217 8.8048 17 6 7.8833 -1.9851 10.5294 18 7 7.0834 -2.5991 11.3743 19 14 9.7356 -2.1366 10.7187 20 1 10.2341 -1.0478 11.5967 21 1 10.0653 -3.4515 11.3248 22 1 10.3797 -2.0309 9.3848 23 6 6.4544 0.1878 7.4211 24 6 5.9878 0.8691 6.3142 25 6 2.0410 1.4420 2.4985 26 6 1.5306 2.1635 1.2496 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 1.6500 -2.1392 33 1 0.4401 2.1638 -1.2492 34 1 1.8939 3.1913 -1.2494 35 1 3.9335 2.4700 -0.0002 36 1 3.9330 0.9287 -0.8908 37 1 5.1705 0.7212 1.2481 38 1 3.7171 -0.3068 1.2482 39 1 3.9345 2.4696 2.4979 40 1 3.4917 -0.0561 3.9078 41 1 4.8008 2.4883 4.6154 42 1 3.1294 2.0579 5.0507 43 1 2.6765 0.3408 6.6991 44 1 3.4982 -0.8849 8.6686 45 1 7.4554 -3.1302 12.0957 46 1 7.5143 0.1487 7.6247 47 1 6.6834 1.3625 5.6517 48 1 1.6777 0.4143 2.4985 49 1 1.6782 1.9553 3.3889 50 1 1.8939 3.1912 1.2496 51 1 0.4406 2.1631 1.2498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772958493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:18 Heat of formation + Delta-G solvation = -49.660209 kcal Electronic energy + Delta-G solvation = -26270.239909 eV Core-core repulsion = 22746.999855 eV Total energy + Delta-G solvation = -3523.240054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.96737 -40.66442 -38.61736 -36.82204 -34.36465 -33.41716 -31.85540 -31.74165 -31.08401 -30.05537 -27.60425 -26.63138 -24.99845 -24.28427 -23.62084 -23.34332 -22.01059 -21.61613 -19.82676 -19.03976 -18.78454 -17.05954 -16.45116 -16.33225 -16.10870 -15.98554 -15.81298 -15.48856 -15.47487 -15.05665 -14.87418 -14.74926 -14.35220 -14.16261 -14.10335 -13.62473 -13.52351 -13.21177 -13.11602 -13.00108 -12.91940 -12.74577 -12.59151 -12.43267 -12.37473 -12.20119 -12.13644 -12.02776 -11.97265 -11.83784 -11.36778 -11.16791 -11.02231 -10.85136 -10.82123 -10.78087 -9.76287 -9.21024 -8.87480 -8.46881 -6.14902 0.61614 0.69474 1.34840 1.44107 1.52513 2.18022 2.79445 3.11520 3.47063 3.53189 3.77767 3.78581 3.99964 4.04691 4.09055 4.13248 4.22227 4.32283 4.38950 4.44095 4.50049 4.58307 4.61769 4.64563 4.68033 4.72961 4.76398 4.79857 4.85957 4.87350 4.99707 5.06501 5.08960 5.11231 5.15180 5.17133 5.20332 5.23296 5.29840 5.31765 5.33750 5.37914 5.42136 5.57020 5.58661 5.64623 5.71868 5.73208 5.84434 6.03619 6.19663 6.29623 6.55158 6.97913 7.79075 8.76361 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.028834 B = 0.002083 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.845769 B =13441.494082 C =13704.146197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.057 4.057 4 C -0.142 4.142 5 C -0.104 4.104 6 C -0.105 4.105 7 C 0.093 3.907 8 N -0.690 5.690 9 C 0.124 3.876 10 C -0.156 4.156 11 C -0.060 4.060 12 C -0.205 4.205 13 C 0.113 3.887 14 O -0.233 6.233 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.019 2.981 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.254 1.254 23 C -0.244 4.244 24 C -0.051 4.051 25 C -0.145 4.145 26 C -0.101 4.101 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.341 0.659 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.145 0.855 44 H 0.112 0.888 45 H 0.272 0.728 46 H 0.116 0.884 47 H 0.134 0.866 48 H 0.065 0.935 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 10.423 -25.697 29.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.057 4.057 4 C -0.199 4.199 5 C -0.142 4.142 6 C -0.143 4.143 7 C -0.017 4.017 8 N -0.320 5.320 9 C -0.004 4.004 10 C -0.157 4.157 11 C -0.078 4.078 12 C -0.224 4.224 13 C 0.062 3.938 14 O -0.140 6.140 15 C -0.489 4.489 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.187 1.187 21 H -0.195 1.195 22 H -0.178 1.178 23 C -0.263 4.263 24 C -0.069 4.069 25 C -0.184 4.184 26 C -0.140 4.140 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.159 0.841 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.163 0.837 44 H 0.130 0.870 45 H 0.081 0.919 46 H 0.134 0.866 47 H 0.152 0.848 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.409 10.276 -25.502 29.399 hybrid contribution -0.062 -0.380 0.980 1.053 sum -10.471 9.896 -24.522 28.441 Atomic orbital electron populations 1.21879 0.95775 1.01429 1.02084 1.21643 0.96020 0.95954 1.01700 1.20521 0.94743 0.95250 0.95217 1.21895 1.01293 1.00031 0.96655 1.21565 0.94686 1.00629 0.97272 1.21485 1.00111 0.99389 0.93277 1.21580 0.92648 0.97640 0.89814 1.60629 1.57912 1.09770 1.03711 1.20602 0.99338 0.93712 0.86756 1.19645 0.92839 1.04598 0.98665 1.20873 0.99973 0.94691 0.92262 1.20437 0.92047 1.07866 1.02049 1.19949 0.94467 0.92014 0.87324 1.83936 1.25454 1.66445 1.38147 1.21804 0.79371 1.32362 1.15354 0.88242 1.26595 1.06097 0.94858 0.94603 1.70181 1.37753 1.31592 1.16390 0.84587 0.73611 0.78472 0.79541 1.18737 1.19530 1.17767 1.21254 0.99702 1.06106 0.99280 1.20893 0.95813 0.95847 0.94393 1.22243 0.96415 1.01302 0.98420 1.21537 1.00527 0.98721 0.93166 0.92611 0.92066 0.93181 0.92329 0.92141 0.92599 0.92080 0.92639 0.91876 0.91666 0.92596 0.92202 0.90926 0.84117 0.90372 0.93659 0.83692 0.86979 0.91855 0.86610 0.84834 0.91688 0.92472 0.92031 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.21 71.98 0.66 -1.10 16 2 C -0.12 -1.45 4.29 30.59 0.13 -1.32 16 3 C -0.06 -0.67 0.54 -52.18 -0.03 -0.70 16 4 C -0.14 -1.44 8.12 71.98 0.58 -0.85 16 5 C -0.10 -1.36 4.73 30.60 0.14 -1.21 16 6 C -0.10 -1.72 5.25 30.60 0.16 -1.56 16 7 C 0.09 1.57 2.47 44.92 0.11 1.69 16 8 N -0.69 -14.89 6.24 -495.59 -3.09 -17.98 16 9 C 0.12 2.85 5.61 85.56 0.48 3.33 16 10 C -0.16 -4.87 5.40 -19.84 -0.11 -4.98 16 11 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 12 C -0.20 -8.81 9.99 22.39 0.22 -8.59 16 13 C 0.11 5.74 6.65 22.58 0.15 5.89 16 14 O -0.23 -14.31 9.76 -22.66 -0.22 -14.53 16 15 C -0.41 -24.51 9.49 67.92 0.64 -23.87 16 16 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 17 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 18 N -0.92 -57.26 13.67 21.61 0.30 -56.96 16 19 Si 1.02 43.56 29.55 68.60 2.03 45.59 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 23 C -0.24 -10.94 9.17 22.39 0.21 -10.73 16 24 C -0.05 -1.82 9.69 22.25 0.22 -1.60 16 25 C -0.14 -2.11 4.90 30.59 0.15 -1.96 16 26 C -0.10 -1.25 4.38 30.59 0.13 -1.12 16 27 H 0.05 0.65 6.43 -2.38 -0.02 0.63 16 28 H 0.06 0.62 6.43 -2.39 -0.02 0.61 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.06 0.88 4.81 -2.39 -0.01 0.87 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.58 6.43 -2.39 -0.02 0.56 16 34 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 38 H 0.06 1.04 6.43 -2.39 -0.02 1.03 16 39 H 0.07 1.27 7.80 -2.38 -0.02 1.25 16 40 H 0.34 7.48 8.46 -89.69 -0.76 6.72 16 41 H 0.08 1.71 8.00 -2.39 -0.02 1.70 16 42 H 0.05 0.92 7.37 -2.39 -0.02 0.90 16 43 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 44 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 45 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 46 H 0.12 5.31 5.64 -2.91 -0.02 5.29 16 47 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 48 H 0.06 1.00 6.42 -2.39 -0.02 0.98 16 49 H 0.06 0.87 7.45 -2.39 -0.02 0.85 16 50 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.07 0.80 6.43 -2.38 -0.02 0.78 16 Total: -1.00 -68.25 386.53 3.71 -64.54 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.16 Total: 30.73 kcal Atomic # 6 Polarization: -55.94 SS G_CDS: 4.54 Total: -51.40 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -2.80 Total: -74.94 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.22 Total: -14.53 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.25 3.71 -64.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772958493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.881 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds